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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0105100 |
| Transcript ID | LotjaGi5g1v0105100.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | NC domain-containing protein; TAIR: AT5G06370.1 NC domain-containing protein-like protein; Swiss-Prot: sp|Q01IJ3|SUV3L_ORYSI ATP-dependent RNA helicase SUV3L, mitochondrial; TrEMBL-Plants: tr|A0A072VJG9|A0A072VJG9_MEDTR Lecithin retinol acyltransferase; Found in the gene: LotjaGi5g1v0105100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:19639094..19641860) extracted from Lotus japonicus Gifu genome v1.2.
ATTATTATTTTGACGTCCAAACCACCATACACATCATTAATTGCAGCGGAGGGGCAAAAGCGTCGCTTCACCTCGAAGAA AATTCCTCATTTTCTCATTTCTCTTTTCTCCCATTCGCGTTGCAAAATTGACAGAGGGGAATCAAAGGCGGTTTCGTTCG GTTCTGCTCTGTTGGGGAGGGAAGAACAAGTAACAACACAGATGGGGTTGCTTTCTAACAGGTATTCTTAATTTTCCATT TTCCCCACGTTCTGGTCTCTTGTCATGAAAATCTGGTTGGGAATTTTGATTTTTGTGATTGTTGTTTGTTTTGGTGGATG ATAACATAACTTTGAATTGGAGCGTGCAGAATCACTAGAGAGAGCCTGAAACCAGGGGATCACATCTATTCTTGGAGAAC TGCATATATATATGCCCATCACGGTTCCCTCTTTACTCTTCTCCTTCTCTACTGTTTTCTATTTTGTTCTTGTTAATTGC TGCTTATATGACAAATGATTCAGAGAGGTTTAGAATTGTTTATTTCTCCTTGAACTTAATTTAGAGGCAGGTTTTGAAAG GGATTTAGGAGACTATAGTCAAGTTCGGTTTAGGTCCATTAGATATCTTTGTGGCCTGTGGTTTGGTTTTGGATATATTG TATTGCTGTTAGACAGTGACTTGCATTTTGGCCCTTTACCCTTGAAGATAAATGTGAAGTTTTTCATGAAAATAAGTCAA TAGAACTTGTCTTGAGCGGTATCGTGTGCGAAGAGAGAGTTGATTTCTTTGTTTCGATGGAAAACAAGTTTTTTATTGAA AGCAAAAACAAGTTATTTTTCAGGATCCCTTTGTAGTTTTTTTGTGTTATTGATGCTGATCAATTGTTTATATGAACTGA ACCACATCTCTAACTTTTAAAGTTTGAAATTTTCTCTTTTGGTTGAAGAGAAACTGAAAAAGAAAAAAACTTTAGAAACA AAAAAAAGTCAAGATTTTCTCTTCATTTCAGATTTCAGAATTTCCTCTCATCCCTCATTTTCTCTCCATCCATACAGAGG GTAAATGTCTAAAGAATTAGGATGATTTGGCCATCATTTTTCACTTCTTTGAAGTTTGTAGGACAAAATTTCAATTTAAT TCACAGTCCTTCAGCATTTATAATGAGATTAAATAATGGAAGAAACTATTCATATGACTATAAACTAGACTCATGGAAGT TGAAAACCATCTGATGAGGGAGACAAGTGTTGAAGATTCTAGCTTTGAACAGAGCCTAGATTACTAATACTGAAGAGGTT TTTGGGTATAATTAGGTGCAAAAAAGGCTTTTATAATGTACTATTGAACATGTGCCATGTCAAACTTATGTGAGACACAA ATGTCTTTTAATATCTATACTATGGAAACAGTTAGCACAAAAAACAGTAGATGTAGTGATTAAGTGGAAGAGAATGATGA TGCAGCACTACATTAATTGTTTAGTGTAAGAGTATTGTCTTGCGGTGTGTCGTCTTTTGAAGAATCTCCCTGTTTGAAGT TTTCTATATTATTTATGACTGAAATCTAATTGTTCATTAACTTATCAACCATATTTTAATACTACCTTTCGTGTGCTCTA ACTAGCCAGAGTCTCTCAGTTCAATTTTTTTCTTCATTTTAGTTGTTTGGCTATTGAGAATCTACTACCTCACATGCACT GCAAATAAATATCAAAATCAGCATATGCTTTATTTATAGAACATTGTATGTGTCATGACAGAATCTTTTACTGAATGAAT TGCAGGAATTTATATTGGTGATGACAAAGTCATTCACTTCACTAGACGAGGGCAAGAAGTAGGAACTGGTACTGTGCTAG ATCTTCTCCTCATCAGTTCCGGACCAGCCAGATCTCGAGAAATTTGCCCAACCTGTGCAGCAGCGTCTCAAGATCCACAT GGGGTCGTCTCCTCATGTCTGAACTGTTTCCTAGCTGGCGGTGTCCTCTACCGGTTCGAGTACGCCGTCTCCCCCACTCT CTTCCTCGCAAAAGCCCGCGGCGGAACATGTACTCTCGCAGTTGCTGACCACGATGATGTCGTGGTCCATCGAGCGAAGT ACCTGCTTGAAAATGGCTTTGGTTGCTACAACGTTTTCAAGAACAATTGCGAAGACTTTGCCATCTACTGCAAAACCGGG CTCCTAGTTGTTGATCACGGGATAATTGGGCAGAGCGGTCAAGCAGTTTCCATCATAGGGGGGCCTCTTGCTGCGGTTCT ATCCACGCCGCTTCGTCTGGTAACTACAAATGTTTATGGAATGGCGGTGACCGCGGTCGGGGTTTACTGTGCCAGTAGGT ATGGGGCGGATATTGGAATGAGGAGGGATGTGGTGACAGTGCAAGTGGAAGACTTGACAACAAGGTTGGCCAATGGCTTG TTGCAGGTGGTTGAATCCCAAATTTCTATAAGTCCTGCTCGTCAATCTCCTCAGATTGTCAGCCAATGATTAAACATTTG CTTTGTTTGAATTTGTTGTGCTATTAATATATAATATATACAGTGTATGCGAGTCCTTTGTTTTTTAACATCTGGGTGTG TAAGCAATTTGAAATTTATTTGAAAGATTCTCCAGTATTATGGATTTGTATAATTTATTTTGCCTTGTTAGCCAGTAATC GTTTGATCTTGTGTTCGCTCATATCATCGGTAGACAACGGTATAAAACGTGTGAGCTATTTGTGGAGCGTTGTTCAATAG AATGAGCTACTAGTGACAAAGCTGCACCTCATTTACTTGATGAAGAG
CDS sequence (LotjaGi5g1v0105100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGGTTGCTTTCTAACAGAATCACTAGAGAGAGCCTGAAACCAGGGGATCACATCTATTCTTGGAGAACTGCATATAT ATATGCCCATCACGGAATTTATATTGGTGATGACAAAGTCATTCACTTCACTAGACGAGGGCAAGAAGTAGGAACTGGTA CTGTGCTAGATCTTCTCCTCATCAGTTCCGGACCAGCCAGATCTCGAGAAATTTGCCCAACCTGTGCAGCAGCGTCTCAA GATCCACATGGGGTCGTCTCCTCATGTCTGAACTGTTTCCTAGCTGGCGGTGTCCTCTACCGGTTCGAGTACGCCGTCTC CCCCACTCTCTTCCTCGCAAAAGCCCGCGGCGGAACATGTACTCTCGCAGTTGCTGACCACGATGATGTCGTGGTCCATC GAGCGAAGTACCTGCTTGAAAATGGCTTTGGTTGCTACAACGTTTTCAAGAACAATTGCGAAGACTTTGCCATCTACTGC AAAACCGGGCTCCTAGTTGTTGATCACGGGATAATTGGGCAGAGCGGTCAAGCAGTTTCCATCATAGGGGGGCCTCTTGC TGCGGTTCTATCCACGCCGCTTCGTCTGGTAACTACAAATGTTTATGGAATGGCGGTGACCGCGGTCGGGGTTTACTGTG CCAGTAGGTATGGGGCGGATATTGGAATGAGGAGGGATGTGGTGACAGTGCAAGTGGAAGACTTGACAACAAGGTTGGCC AATGGCTTGTTGCAGGTGGTTGAATCCCAAATTTCTATAAGTCCTGCTCGTCAATCTCCTCAGATTGTCAGCCAATGA
Protein sequence (LotjaGi5g1v0105100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGLLSNRITRESLKPGDHIYSWRTAYIYAHHGIYIGDDKVIHFTRRGQEVGTGTVLDLLLISSGPARSREICPTCAAASQ DPHGVVSSCLNCFLAGGVLYRFEYAVSPTLFLAKARGGTCTLAVADHDDVVVHRAKYLLENGFGCYNVFKNNCEDFAIYC KTGLLVVDHGIIGQSGQAVSIIGGPLAAVLSTPLRLVTTNVYGMAVTAVGVYCASRYGADIGMRRDVVTVQVEDLTTRLA NGLLQVVESQISISPARQSPQIVSQ
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 256 | 256 | 7.7E-149 | – | |
| PANTHER | 1 | 256 | 256 | 7.7E-149 | – | |
| Gene3D | 3 | 57 | 55 | 3.8E-6 | – | |
| Pfam | 12 | 165 | 154 | 2.4E-31 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi5g1v0105100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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