Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0107400 |
| Transcript ID | LotjaGi5g1v0107400.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Co-chaperone, HscB-like protein; TAIR: AT5G06410.1 DNAJ heat shock N-terminal domain-containing protein; Swiss-Prot: sp|Q8IWL3|HSC20_HUMAN Iron-sulfur cluster co-chaperone protein HscB, mitochondrial; TrEMBL-Plants: tr|I1L9M4|I1L9M4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0107400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:20448240..20452452) extracted from Lotus japonicus Gifu genome v1.2.
AAAAATAATTCAGAAATTAAACATTTTTTTTGAGACAGTAAATACCTGAGTCCCTCAAAGCTGCTGTCTCTTGACGCTCC CGAAAAACAGGAACTGCAATCTTCTTCACTGTCACAACCTCCACCTTCACGCACAGAAGCTAGCTAGGTATTCACGCGTG AAACGAATCTCAAGTGCCGAATCGATTTTGCCCAAGCAGAATCGATTCTACTACTGGGTGCGGAACCAACCAAACCCCTT CAAACCACAATGTTGAAGAAGAAGCTCTTCCCAACGACCCTTTCAACTTTCTTTTTGAGCCGCACCTTAACTTCGATTCC TCAACACTCTCACCTCAAACTCTCTCTTCACGCATTTCCATCACCACCACTCCGAGATCTTCTGTGTCATAACCCCGCGT TCTGTTTCTCTCTCGGGTCTCTCAGATTTTGCGGGGAGAGTTTCTGCTCAAAACCTGCAGAGAAGTTTGAATCCAGGTGC TGGAATTGTCACGCTGAATCAAAACCTGAATCGGAACCTTTCCTGCTCTGTCACTCGTGTCGGTGCATTCAGCCTGTGGA TCATTCGGTGGATTATTTCGAGATTTTTGGGTCGTAAGTTTCTGGGGTTTTTGTTTTATGTTCTGGGTGCTGAAATTTTT AACTGAAGTTTTGATCTTTGTTGCAATTCATTTGTGTTATAGGCTTTCAAGAATGAAAAGTAAGTTATGTTGGTTTGTAG CATATGAATCTTGTTGATTTGAGGCACAGAAATTTTTTACTAGGAAAGTGAAACTTAATAATTTTGTAGGAAATTGCTGG TTTTTTTTGTCATTCTAGATCATTGCATGCTTCATGTTTAAGGTTGTAATGTATGTTTTGGAATGTGTCTCATCAAGCAG AAAGATAAATAATGGTCTTTATGTATCATAACTATGTCTTAGTTATATTCCTGCTTTTCAATGTTAGGCTATAAATAAGT GGTTTTTAGTTTTTGTGATGAAGAAAAGAGAAATCTATTGATTTATCGTCTATAAATTGATCGATAAGTTGAGAAACTCA AAAGTGGTTTGTCATTAATTTAAGTTTTGAATTTAACACAGGGAGAGGAAATATGACTTAGAGAGTAGCTATTTGGAGGG CAAGTACAAAGAGTGGCAAAAGAAACTACATCCTGATTTAGTACATACAAAATCTCAGGTTGGTTTGATGCGATGTCCTT TTGTCATGCTTTATATTTCATATAATTTTACTTCTTTCTGATTTAGTTTTTTGCTCTTTTATTTGTCTGGAGGAGGGTAG TGAAGTTGGATTTGTTTCTGGAGAAACTAACAAATTTTGTTTTAATTACTTCAATTGGTTAGAAAGAAAGAGATTTTGCT GCTGAACAATCTGCAAGGGTGAATGATGCATACCGTACACTTGGCAAGCCTTTGTCAAGAGGGATTTACATGGTAAGCAT GGTTTCATGTAAAGATTTGAAATGATGATGCTTCATTAATTGCAGAATTTAAAGGTCTTAGAAGTTCAATGGTGATAATA AACTTGCGATGGAGAAATTTTTTATTTGATCAAATGAGAAAAATAAATTATTGTTCAATCAACACAAGCTTTCCAACAGT TTCATTAGTTATGTATAGTTTAATAGTTTCTTCTGCCCTTTAACCGAGTAATGCTGTCCTGTTGGGTTTTAGCTGAAGCT TGACGGTGTAGAAATTGATGAAGAACAGACAATTTCAGATCCAGAATTACTAGCAGAGGTAACAGATAGAGCTTTATTAG TTTTCATTGTGAAATTTCCTTTCAACTTAATTTCTGTGTTAAACAAAATATCATTAAACCATGTACTTTGAAAAACGAGT TGAGTTATTCTCTTTGAAGCTTGAATAATTTATTTGAATTTGAAGATACTTCGATTTCTCTTCCATAGTGAAAAAAATAA AAATATCTAAAGGAAAAGTCGTAGCAATCTGAGTATCATTGTGCACTGTGAATGGGAAGATAGTTATAATGATGAATAGG TAGGTATTCTTTAGCATCTGAAAATCCATTTCCCATTTAGGGTCGGCATTGTCAGCATACAGAGCATTGACTTACCTTCT CTAAGTGAAAATAATGTGAAATTTAAATATCGAAAATACATTTCAGCAAGGTATACGTTCAATGAAATTCTAAACTAGCA TTTTGGCACAGAAACATATTTTCCTTTTTCTTTCAATCTTTCCCATCTCTTTTTTTCTTCCTCTTAAATAAATCAGCTTC CTTTTCCCAGAACTTAAAATTGAACTTTGGAATTTAATTGGTATACAGTATACACTGTCTATTGTTTACTATCTCTTTTC TCATCTTCCCTTCTACAAAAATTAAAATCTAACTTCAAATCCCATTCTACTGCTAAATTTGTCTGCAGATAATGGAAATC AGGGAAGCAGTTGAAGAAGCAAATAACTCTGAGGCTTTGAATCAAATTCTCTCTCAGGTATGTCTTGGAAGCTCCAATAG TCCAATCTACAGGGCACAAGTGCAACAAAGTCAGTTCAAATGATTTTTATATTATTGCTCTGATGCTGTTTCTTCATATC TCCCTCTGATTCTTCATACAGATGCAGGAGAAACTGCAAAATTGGTCTAATTCCTTTGCTCATGCTTTTCAAAACCGGAA CTTTGAAGAAGCGAAAATTGCAATCAGGAGAATGACTTACTATAGTCGTGTGATTGATGAAGTTGTAAAGAAGCTTTGAT ATAGGTAAGCCTATAGGTAATTTCATCTTTTTCTTTTGCCTGATTGCTTGGGCTACCCTTGGTAGAGGTGAAGCTAAGAA ATTTAAAAACAAGAATTGAAGTTTCGGGTGAAAACTGAAAAGTCCTTTATGCTAACTGAAAGTAGGTCAATTAGAAAGAA ATGACAATGGGATGGCCGTCATTTTCGTCTCATCTTTAAAAAAAATTAATGCATTAATGCAATTAAGAGCTAAAAATGGA GGTTGGAAGCAACTGTTAATATCTGGAATGAACTTGACTCAGTGTTTTCTCATATCCTAGAATTATTATCTCAGTAAAGA CAACCTTATCTGGAATGAACTTGACTGAGTGTCTTCTTATATCCTAGAATTATTATCTCAGTGAAGACAACCTTAGTTTA AGTTCATCAACCCGATCAATAATCTCACCATATATTCATTTGTTTTAAATATGCTTTTATCTTCATTTTATATTTGTCGA AAGCATGCACGTTACACAAGTACAATTCCGCTTGACTGTTATATTGATAAGTGATTCTATCAGCTAGTAGACACTATACA CACTCGTGTTATTACAAGTTCCAAATCAAGGATGTAGAAATGAGAGATTCTTGCATGTTCATGAATGGAATAGCAATTAA TGCATGCTTCAGTTACATCTCCACCTCAATTACATCTCCACCATTGATTTTAAGTTGGTAGCCTCAAATCAATTGTGGAA ATATTCTTAGAGCGTGCTTTAACTTCTCTGTAGAAAGTGCAGGATAATATGCTTGGTCCATATAATTGTAAAATGGATTG CATTCTTTTTCTATATTTTCATGAAGATATATTCGTTGCTGCACCATGTCTGACAGCATTTTTAATCACTTTCCAGGACA TCATTATTGCTGACCCTCTTCTGCCTTTTGCACTTCAAGGCTTTCACAGTAAAGTGTATTCATCAAAAACTTATACTTCT ACTGATATGTTCTTTCTCTATAACCTTTGTAATGTGGTGCATAGTTTCATCTTAAGATGCCCCTACTTGTGATTCTGCCT CTGATTCCTTTACTGTCATTTTATTATTGATTATATCAGTGTAGGCAAAGACGGAGTGATTCCTTTGGATTGATCACATG TCTGAATGAAGTGGCGTCTCAGAAAATTACCATATGATCTCATATATTTCTCAGTAGACCTTTTTGCTTCTCAATGCACA TTCTGACACATAATGAGGCAGCCTGCATGCAACTTAGCAACAGTCTTGTGTTCCTGAATATAGCTATTATGAATACCTTG GGAATTTTGCTTCACTGTATTTGATGCTACAATAAAGGTGTTTTGTGGCGAGGTTAGAAATGGATTCTTATGTTATGCAA TTTGATGTTTATAATAAACGAGCTGCCAAATAATATTTAATTTAATTATCCATTAGTTTATATTCTGGATAATTAGCCCT ATGTTTTTGTTAACAAAATTATTTCACGAAGAGGATAATGGCTTTTTAAGGGA
CDS sequence (LotjaGi5g1v0107400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTTGAAGAAGAAGCTCTTCCCAACGACCCTTTCAACTTTCTTTTTGAGCCGCACCTTAACTTCGATTCCTCAACACTC TCACCTCAAACTCTCTCTTCACGCATTTCCATCACCACCACTCCGAGATCTTCTGTGTCATAACCCCGCGTTCTGTTTCT CTCTCGGGTCTCTCAGATTTTGCGGGGAGAGTTTCTGCTCAAAACCTGCAGAGAAGTTTGAATCCAGGTGCTGGAATTGT CACGCTGAATCAAAACCTGAATCGGAACCTTTCCTGCTCTGTCACTCGTGTCGGTGCATTCAGCCTGTGGATCATTCGGT GGATTATTTCGAGATTTTTGGGTCGGAGAGGAAATATGACTTAGAGAGTAGCTATTTGGAGGGCAAGTACAAAGAGTGGC AAAAGAAACTACATCCTGATTTAGTACATACAAAATCTCAGAAAGAAAGAGATTTTGCTGCTGAACAATCTGCAAGGGTG AATGATGCATACCGTACACTTGGCAAGCCTTTGTCAAGAGGGATTTACATGCTGAAGCTTGACGGTGTAGAAATTGATGA AGAACAGACAATTTCAGATCCAGAATTACTAGCAGAGATAATGGAAATCAGGGAAGCAGTTGAAGAAGCAAATAACTCTG AGGCTTTGAATCAAATTCTCTCTCAGATGCAGGAGAAACTGCAAAATTGGTCTAATTCCTTTGCTCATGCTTTTCAAAAC CGGAACTTTGAAGAAGCGAAAATTGCAATCAGGAGAATGACTTACTATAGTCGTGTGATTGATGAAGTTGTAAAGAAGCT TTGA
Protein sequence (LotjaGi5g1v0107400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLKKKLFPTTLSTFFLSRTLTSIPQHSHLKLSLHAFPSPPLRDLLCHNPAFCFSLGSLRFCGESFCSKPAEKFESRCWNC HAESKPESEPFLLCHSCRCIQPVDHSVDYFEIFGSERKYDLESSYLEGKYKEWQKKLHPDLVHTKSQKERDFAAEQSARV NDAYRTLGKPLSRGIYMLKLDGVEIDEEQTISDPELLAEIMEIREAVEEANNSEALNQILSQMQEKLQNWSNSFAHAFQN RNFEEAKIAIRRMTYYSRVIDEVVKKL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 5 | 5 | - | – | |
| SignalP_GRAM_POSITIVE | 1 | 10 | 10 | - | – | |
| Phobius | 1 | 21 | 21 | - | – | |
| Phobius | 6 | 16 | 11 | - | – | |
| Phobius | 17 | 21 | 5 | - | – | |
| Phobius | 22 | 267 | 246 | - | – | |
| PANTHER | 67 | 267 | 201 | 3.7E-88 | ||
| Gene3D | 67 | 179 | 113 | 1.3E-32 | ||
| PANTHER | 67 | 267 | 201 | 3.7E-88 | – | |
| SMART | 107 | 172 | 66 | 0.0022 | ||
| SUPERFAMILY | 107 | 179 | 73 | 6.02E-15 | ||
| CDD | 108 | 168 | 61 | 1.01659E-5 | ||
| ProSiteProfiles | 108 | 180 | 73 | 9.129 | ||
| TIGRFAM | 119 | 261 | 143 | 6.0E-28 | ||
| SUPERFAMILY | 186 | 265 | 80 | 8.89E-18 | ||
| Gene3D | 186 | 267 | 82 | 8.7E-21 | ||
| Pfam | 193 | 263 | 71 | 9.8E-18 | ||
| Coils | 213 | 233 | 21 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | ATPase activator activity | Binds to and increases the ATP hydrolysis activity of an ATPase. | ||
| Molecular function | Chaperone binding | Interacting selectively and non-covalently with a chaperone protein, a class of proteins that bind to nascent or unfolded polypeptides and ensure correct folding or transport. | ||
| Biological process | Protein complex oligomerization | The process of creating protein oligomers, compounds composed of a small number, usually between three and ten, of component monomers; protein oligomers may be composed of different or identical monomers. Oligomers may be formed by the polymerization of a number of monomers or the depolymerization of a large protein polymer. | ||
| Biological process | Protein maturation by iron-sulfur cluster transfer | The transfer of an assembled iron-sulfur cluster from a scaffold protein to an acceptor protein that contributes to the attainment of the full functional capacity of a protein. |
Expression pattern of LotjaGi5g1v0107400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…