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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0114800 |
| Transcript ID | LotjaGi5g1v0114800.3 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Histone-lysine N-methyltransferase ATXR4-like protein; TAIR: AT5G06620.2 SET domain protein 38; Swiss-Prot: sp|Q9FG08|ATXR4_ARATH Histone-lysine N-methyltransferase ATXR4; TrEMBL-Plants: tr|A0A072VUJ8|A0A072VUJ8_MEDTR Histone-lysine N-methyltransferase; Found in the gene: LotjaGi5g1v0114800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:23395429..23399232) extracted from Lotus japonicus Gifu genome v1.2.
CTCATATGTGGGAACTGGCCATTTCACGCTTGAGAAGAAGAAAAATAAGAAGATGGCAGTGACACGCTCACTCCCACTCC GCTTGGCCATTTCACACTTCACTAAACCATTTCACCACTTCTCCTTCTCTACCTCCACCACCGCACCGCCACAACACCCT CCTCCCATCCGAGTCGCTCTCACTGACTCAGTCGGCCGCGCCGTCTTCGCAACTCGCCCGATCCCTTCCGGTGATCTCAT CCACACCGCCCAACCCGCCGTCTGCCACCCTTCTCCCTCCGCCGTCCACTCCGTCTGCTATTCCTGCCTCGCCTCTCTGT CCTCATCAATACCCCAATGCACCCCGTTTTGCAGCCACCATTGCCACCAACGCTCTAAGGTTTTCCCTTTCCATACCTTA TTACAAATTTGAGCAGCTTTTATGCCAATTTTGTAGTTTCATTCAGTCAATATAAATGCATAGTATATGGAGTTTGTATA AAATGCAGTGAACAAACATGTATTTTTTGCTTAGTTATGTACTTATTTTGAGGTTTTGATATTATTTAGGACTATTACGA TGTTGAGATGAAAGCGAATTGGATGGACTTTGATAACTATTGCCGGTATGAAAGTTTGTTTCTAGCATCAAAAGATTAAT TGGCATCTTCAATTATGATGGGTTTCAACAATCTTCTAAACCTGTGTGAATAAAGATTTATACATCATTTTATTTCCTCG GCGTCATTGGGACTAATTTTGCTCTTTGGTTTTGTATGTAGCCTAATGGTTTCTATGAACCATAATTCTTGAATTCAAAA TAAAAGAAAGCACTTGAATCTTTAATACAAATTCTGGCTAAGTTCACTTGTTTGTTTATGGAGTAAGTATGGTACAATGG AAAGGAGCAAAAAGGACAAAGGAGCTATATGATCATCCCTGATTAGTCGTTTTGAATGTTTGTAACATGTATTGATGGTT TGAAACTTTGGGTGCATTTGAGTAAACGGCTTAATTAAGCGCTGATGGCAATAAGTGCTTATCTCATAAGCACTTATTCA TAAGCTAATTTGAGAAACTTTTTTAAAGAAGCTCAAAATAGGTTATGGATAGACACAAGCTCTTATTTATAAGCTATTCT GAACAATTTATGAAAATAACCTCAAACAGCTTATATGTAGGTCATGAGCTTTTTACATAAGTTGTCCCGAACACTTGCAT TTGAGCTTATACTGTAAGATAAGCTCAAATAAGCTCTTCCAAACAGGACCTTTATGTACTATACTCAAAGTTATCTAATT TAGCAGTTGTCACTTGTCATAACACAACTTCTAATCAATCTAAACATTATGGATTGCCATTACGATACATTGTTGGACTT TATGTTAACACTTGACACCATAGCTGATTATTTAGTATTTTATTGTTCGTAAGTTAAATCAGTGACACTTATTTGACCTC TTTATGAAGGACCCGTGGTTTGAAATATCCATTTATGGTAAAGAGGTTGGCTTGTATGGTCGTATCAGGAGTTTCCAAAA GTGACAGTCTTGACATACTTCAGCCTGCCAATTTGACACCTGAGATGATTTTAGAGGTGAGACATTTTGAAGTTTATGAT TATAATGTCGATAAAAGGTACTAATTATATTAGCTGGCAGATTTCTTCTAAACCCAATAAAAACTAAATCATGAATGAAA GTCAATTAGTTTTCTTGTGAACTTTTGAATGAATGGAACTCTTTGCTATTTTCTTGGTAAAAGTGAAAATGGGAAGGCAG ACACCCCAGAGGTAGAAAGTGTGTCTAAACTTATTATGTCCAAATAAATAGGTAGCATTTTCATCTTCCTTTTTTCACTT ATTCCTATCATCCACTAATGTTGGAAAGACAAGCTTTCTGGTGTAAATGGTTGCATTTCTTATAAATTGTTCATTAGAAC AGGAGTAAACAGTTATTGATGTTTAAATTAAAATTTGTAGTGATTTGTGATTGTTTAGCTTTGGAATCAGTATTTTACTG CTGTAATCTATTTATGCATATGTTCATTTTTCAGATGGAGGAGGAGTTTTCCTTGCTAAGGAGTGCCTTCACGAAGGCAC TTATTGCGGATGAACATATTGCTTGTATCCTCCTTATGTCAGGAACATTTTGTTTGTAGTAGATACACAGCACACACATA CATGATGAGTACACAGATATAAATTGATGGACTACTTATCTTGACATTCCAAGTTTTGACCAAGCAATGGTACATTAATG TTTTGGCCCGAATTCGAATCAATGCATTTCGCATTGAATTGGCTGGTGGACTATATGAAGATCTCCTTGCATCAGCAGTT GCATCTGTAGAAGCTGAAGCTGCTGTTGGAAATGCTGTCTATATGCTTCCTTCCTTCTATAATCATGATTGTGGTCAGTA TAATTATCTCTTTTCTCAGTTTCTGTCATCAAAATGGCCTAGATTTCTTTTTCTCTTTTTCCATTCTTTTGTTTGCTTGA CCAAGCTTTCCAACTTAAGCAGATCTTTTAAATTATTCATAAATCACAGACTGCTGAAAACGATAAAAGTTAATTTTAAC AAGCATTTTGGTTTCATGTTTAAGCGATTTTGTAACTAAATGGTTATAAGTCGCGTACAAATGCGCACAAAGTGAGGGAT AGAGAGTTGACCTCCCTAAACCTTGTAGCTTTTACCTTGAAAAATGAGCAATCAAACTTCTTGGTGTTGCAGATCCTAAT GCACATATTATATGGATAGACAATGCAGATGCAAAATTGAAGGCCCTCCGTGACATTGATGAAGGTTTGTTATAAATAGT TTTTTCTTTGTTAAAAATGTTTTCCCCTTCTAATTCTGTTGGTTGTCTCATCCAGAAAGTAGTGCATTCAATGATTTTTG AAGAAATTCAACTCATTTTGATGTATTTCTATGTGACAGTTCTAGCTTCTGACTTTTTCTGACAACATACTGGAAGACTA TTTGATGGTTTCTGAAAATATTCTACTTATTTTGATGTATTTACATGTGACAGTTCTGAGATTTTTCTGACAACATATTG TGTTGATGATTCATATAGCCAACTCTATCTAGGGTGATATGGCTGATTTGTTATGGATCTTGGGAAACTGGTTTTCCTTG CTGATTTGAAATGCTTCCGTGAAACTATCATTGATCAACTTAAGTTTTCTCTTTGGTAAACTGCAGGTGAAGAACTCAGA ATCTGCTATATCGATGCCAGCCTGGACCGTGATGCTAGGCGAGAACTATTATTTCGAGGTTTTGGCTTTCAATGCAATTG TAGTAGGTGCTTGCATGGCGATTAGCTGTGATTCTCTAAAGATATTCTCCTAGGTTTTGCAATATAAACTGGTTGTAACA ATGAACTGCGTAGGAAACATTAACAAAGGTTTGTCTTTTTCCAACTTTACTGTGATCTGTATTACTGTTATTGTTATTGT TGGTCTAAAATCCCCCACTGCATTTCCAGGGATGAAGTCTGGAACGAATACTATGAATTCACAATCCCGAGTAATGGATT TTAATTTGTCATTGTCAATACTCAATAGAGTATACATGCACTCAGTGACTGCAGAGGAGTTATAGTGAAGGGGTTCAAGT TTTGATTTTCATACTGAAACCAATAACAGGGCCAAAAAAGACAACGACATGTAAAACTGCTTCGCTGTAGTTTTGGTATT CAGTTAAAGGTATATGAACTTTAGTCTTGAACTTAAAGAAAATGATCCTAATATCACAAGCTCCATTAGATTTTGATGGA AATTAAACAAACCGATCACAACGCAGATATTAAGTGTTTAAAAT
CDS sequence (LotjaGi5g1v0114800.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCAGTGACACGCTCACTCCCACTCCGCTTGGCCATTTCACACTTCACTAAACCATTTCACCACTTCTCCTTCTCTAC CTCCACCACCGCACCGCCACAACACCCTCCTCCCATCCGAGTCGCTCTCACTGACTCAGTCGGCCGCGCCGTCTTCGCAA CTCGCCCGATCCCTTCCGGTGATCTCATCCACACCGCCCAACCCGCCGTCTGCCACCCTTCTCCCTCCGCCGTCCACTCC GTCTGCTATTCCTGCCTCGCCTCTCTGTCCTCATCAATACCCCAATGCACCCCGTTTTGCAGCCACCATTGCCACCAACG CTCTAAGGACTATTACGATGTTGAGATGAAAGCGAATTGGATGGACTTTGATAACTATTGCCGGACCCGTGGTTTGAAAT ATCCATTTATGGTAAAGAGGTTGGCTTGTATGGTCGTATCAGGAGTTTCCAAAAGTGACAGTCTTGACATACTTCAGCCT GCCAATTTGACACCTGAGATGATTTTAGAGATGGAGGAGGAGTTTTCCTTGCTAAGGAGTGCCTTCACGAAGGCACTTAT TGCGGATGAACATATTGCTTGTATCCTCCTTATGTCAGGAACATTTTGTTTGTAG
Protein sequence (LotjaGi5g1v0114800.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAVTRSLPLRLAISHFTKPFHHFSFSTSTTAPPQHPPPIRVALTDSVGRAVFATRPIPSGDLIHTAQPAVCHPSPSAVHS VCYSCLASLSSSIPQCTPFCSHHCHQRSKDYYDVEMKANWMDFDNYCRTRGLKYPFMVKRLACMVVSGVSKSDSLDILQP ANLTPEMILEMEEEFSLLRSAFTKALIADEHIACILLMSGTFCL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_GRAM_POSITIVE | 1 | 22 | 22 | - | – | |
| PANTHER | 29 | 194 | 166 | 1.7E-57 | – | |
| PANTHER | 29 | 194 | 166 | 1.7E-57 | – | |
| SUPERFAMILY | 35 | 106 | 72 | 8.37E-8 | – | |
| Gene3D | 50 | 80 | 31 | 2.0E-8 | – | |
| Gene3D | 81 | 118 | 38 | 2.0E-8 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi5g1v0114800.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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