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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0116200 |
| Transcript ID | LotjaGi5g1v0116200.2 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Retrovirus-related Pol polyprotein from transposon TNT 1-94; TAIR: AT1G21280.1 Copia-like polyprotein/retrotransposon; Swiss-Prot: sp|P10978|POLX_TOBAC Retrovirus-related Pol polyprotein from transposon TNT 1-94; TrEMBL-Plants: tr|A0A151S4H3|A0A151S4H3_CAJCA Retrovirus-related Pol polyprotein from transposon TNT 1-94; Found in the gene: LotjaGi5g1v0116200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:23651217..23658946) extracted from Lotus japonicus Gifu genome v1.2.
GTAAAAGATAGCTTTACCAATTTCTTTGTATATATATAGATAATACCTTCATTGTAATAGTTGATTTTTTCATTCAATAT TCAGAAAGCACTTTCATCTCTTTCTCTCGATTCACATGAGTATCAATTTCAACATGGTATCAGAAGTTTTTTTCTTCCGC GATTTCGTTGATTGATTCGTCGATTGGATGATCAATTCCTTCGTTTCTTCTTCTTCTTCCTTCGATTGTGTCTTGCTGCG ATTGATTCGTTGGTCGATGCAATCGTTTCTTCTTCTTTGATTTGATTTGTGTCCTGTTGCTTGATTGCATCTCGTTGCTT GATTCGGATTGTTTTGTTTCTCTGATTTCATCGTTTTCTTCTCTGATTTCTTCTCATGGAGAACCCTAGCAGCGTCTATT ACCTTCATCCATCAGAAAATCCAGGTCTGGTGTTGGTTTCACAACCGCTAAACAGTGACAATTACAATTCCTAGCGCAGA GCTATGCGCATGGCACTGATTGGAAAAAACAAGCTTGGATTCGTTGATGGAACGATTCCGATGCCTGCAATTGATGATCC TCTCTATCGGCTTTGGGAGCGGAACAACAACATGGTTGCGTCCTGGTTGTTCAATTCGATTTCGAAGGAACTCACAGCTA GCGTGATCTATTCCACAACAGCGGTGGAAATCTGGACAGATTTGGAAGAACGGTTTCAGCAGCAGAATGGTCCTCGTGTT TTCCAACTCAGAAGGCAACTTCTAGGTCTGACACATGGAACTCAATCTGTCAGTCAGTATTACACTAAGGTGAAAGCAAT CTGGGAAGAGCTTGGTGAATATCGCCCTACAATCAATTGTCAGTGCGGAGGTCTTCAACCTTTCTCTGATTATCTGCAAA AAGAGTATGTCATGAGCTTTCTCATGGGATTGAATGAGTCTTTTTCTCAAATTCGTGGTCAAATCCTCCTGCAAGATCCA ATTCCATCAATCAATAAGGTTTTTTCTCTAATTGTGCAAGAAGAGAAGCAGCGTGAGATTGGATCTTCAAGTTCTATGGG CACAGATCAGAGTGCTGCATTTGCTGTGCAGAATTCTTCTCAGTCTTCTTATGGTCGATCTGGTGCACAAGGAAACTATG ATAACAAAGGAAAGGCAGATCCAAGAGGGAACAAGAATCGTCCTCTCTGTTCTCACTGTGGCCTTCTTGGTCACATGAAG GACAAGTGCTACAAGTTGATTGGTTATCCACCTCATTACAATAAAAATCAGGCAAGAAGTTATCCATCTGCACATCAGGT CTCAGATGTTTCTCATGGTGATTCTCAAACCATTGGTGAGCTCAGCACCAGTTTGACACAACAACAATACCAGCAATTGT TGACTATGCTGCAATCTCAGATGAATTTAGCTGCTGCTTCTGCCTCAAAGAAACCATCACCTGCTAATTCAGTTGGTAAT GTTTTCTCTGCTGCCTCTTCTTATGTTTCTTCTCCATTCATGTGGATTGTTGATTCTGGGGCTACTTCCCATATAACTCA TATCCTAGATCTTTTTACATCATATAAACTCTTAGAGCACAAGTTTGTCATGCTGCCAAACAAGGTCACTGTTCCTGTTA GAGCTATAGGTTCTGTAAAGTTGACACCAAATTTGATTCTATCAAATGTGCTCTATATTCCTGAGTTTCATGTAAACCTC ATATCTGTTAGTTCACTTTTAAAAGATTCTAATCTTTCTGTGACTTTGCTTCGTGATTCTTTTACAATCCAGGACCCAGT GCGATTGAAGATGATTGGCAGGGGTAACCTGCATAACAAACTCTATCTTTTTGAAGCACAAAGTCAAGTTTTTGAAGCAA ATGGTTCACCACAAGTTTCTGTTTCAAGTGTTTTTTCTCAATCCTTTGTGTCTTCTGTTTTCACTAGTTCAAACAAAAAT AAAATTGCCAGTTTGTGGCATTCTAGACTAGGGCACTTGTCTGATAAAGTGCTAAAGGTTGTAAGCAATCTAGTTCCTTT TACTGTACTTCCTGATTTTCATTCACACAATTGTAATGTTTGTCCTTTGTCTAAAATGAGAAGACTTTCATTTGTTTCCA ATAATAATCTGTCAGCTTCTTCCTTTGATCTTATACATATTGATATATGGGGGCCCTATCATCAACACACACATGATGGA AAACAATATTTTTTGACAATTGTGGATGATTGCACTAGATTTACATGGTTGTATCTGTTGAGAGCTAGGTCTGAGGCAGT ATCTTGTATCAAGTCCTTCTTTGTTTTTGTTCAAACTCAATTTAACAAGCGGATAAAACAACTAAGGTCCGATAATGCAC CCGAGTTTCAGTTAAAGGAATTCTTGTTGCAACAGGGAACTCTTCATCAATTCTCTTGCCCATATAGACCCCAACAAAAT TCAGTTGTAGAGAGGAAACATCAACACTTGTTGAATGTAGCTAGGTCCCTTATGTTCCAGTCTAGGGTACCATTGCATTT TTGGGGTGAATGTGTAGCTACTGCTACCTTTCTCATTAACAGAACACCTACACATGTTTTGAATTATGTGACACCTTATG AAAAACTGTATGGGAAGGCACCAGATTTCACTAACCTTAAGGTGTTTGGCTGTTTATGTTTTGTTTCCACACAACCGGCA CAAAGAAACAAGTTTACTGCTAGATCAGTACCTGGGGTTTTCATGGGTTACCCTGTTGGATACAAAGGCTACAGGGTCTA TAATCTACAAACCAAGCAGTTTCTGGTGTCCAGAGACATCGTTTTTCATGAGGATCAGTTTCCATTTCACAGTGTGCACC ATACTGCTGCACAACCAAATTTATTCAATGATTTGGTTATTCATTTACCTCTTCCAGAGCACAATATGGCTCCTACAGTA CCTATATCAGCACCAGAGACATCGAACTCACCTTCTCTTGGATATCTAGGTGAAGCTTCTACATCACAAGTTCCCTCTCC CACACAAGTTCCTACTAGAAGATCAAGTAGACAAGTCAGGGCACCCTCCTATCTTCAAGATTATGTTTGCCAAACACAAT ATCCTCTACATCACTACTTGACTTATGACAAGTTATCTCCCACATATAGGAATTATGTGCTGACTGTTGCTGAGATTTAT GAGCCTCAGTTTTTTCATCAAGCTGTGAAATACCCGGAATGGAGGCAAGCTATGAAAGAAGAGATTGATTCTTTGGAGGC CAATAATACTTGGTCAATTGTCTCTTTACCGGCAGATAAAAAGGTCATAGGATGCAAATGGGTCTAAAAAGTAAAATATA AGGCCGATGGTTCTCTTGATCGATACAAAGCTAGGCTCGTTGCTAAAGGAAACACTCAACAGGCTGGAATAGACTTTTTG GACACCTTCTCTCCTGTTGCAAAACTCACTACTGTGAGAGTTTTGCTTGGTGTTGCTGCAGCTAGGGGTTGGCACATGTT GCAGTTGGATGTGAATAATGCGTTCTTGAACGGAGATCTTTTTGAGGAAGTCTTTATGCAGTTGCCAATGGGATATCCGG TACAACAACAAGGAATGGTATGCAAACTACACAAATCATTGTATGGTTTGAGGCAAGCCTCTAGACAGTGGTTCCTCAAG TTCTCCACTGAATTAAAGTCTCTAGGATTTCAACAAGCTACCTCAGATTATTCTCTTTTCTCAAGAGGCAAAGGGACTTC TCTTGTCATCCTACTTGTTTACGTGGACGACATCATAGTAGCTGGTCCCAACTTAGAAATGATCAATCAAGTCCGAACCT TGCTTCAACAGTCCTTTAAACTCAAGGTTATTGGAGATTTAAAGTACTTCCTTGGTCTTGAAATAGCAAGAGCTAGTTCT GGAACTTTTCTCTCCCAAAGGAAATACACATTGCAGCTGCTGTCTGACACAGGTTTTATGGGGGCAAAACCACAATCATT GCCTTTGGATCCTAATATCAAGCTCACTGATACAGAGGGTACTTTACTTCCTGACAGTTCTATGTACAGACGTCTCATTG GAAGGTTATTATACCTGACAATCTCTCGACCTGACATAACCTTTGCAGTGAATAAGTTGAGTCAGTTTATGGCACAACCC AGAACCTGTCATCTGGATGCAGTACATCATTTATTACAGAATTTGAAAGGCGCTCCGGGACAGGGTATTTTCTTCTCAGC AAAGTCCAATCTTCAACTGAGTGCATTCACAGATGCAGACTGGGGATCTTGTTTAGTAACCCGCAGATCTACAACTGGAC TTTGTATCTTCATGGGAGATGCCTTGATTTGCTGGAAATCTAAAAAACAACCCACTGTCTCTAGGAGCTCTGCAGAGGCT GAGTACAGGGCCTTAGCATATGCAGCTAGTGAGCTTCTTTGGCTGAAGCAGTTGTTCAGAGTATTTGAGATCCCAGTTGA ATCTGTCAAGGTTTTTTCAGATAACAAGTCAGCTATGCATCCTGCTACCAATCCATTATCCCATGACAGGTCCAAACATG TGGATATCGATGTTCATTTTATCCGTGAGCATGTGCATTCTGGGTTTCTTCGGTTGATTCATGTTAGGTCTGAACATCAG CTTGCAGATCCACTCACTAAAGCAATACCTCTTCCACGGTTCAAGCAAATATTGAGCAAGTTGGGAGTGAAAGATATTTA TCTCCCAACTTGAGGGGGAGTTTTAGATTTAGTACAATTATACCTTGATCAATTAGACAGCTAGATTAGTTACATTTTCT GTTACAGAAGTTAGAGCAGTTAGAGTAGTTTGTTACAGAAGCTAGAGCAGTTAGACTAGTTTGACTTTCAGTTACAACTG AATCAGAGTTGGTTACACGTGTGGTAAAAGATAGCTTTACCAATTTCTTTGTATATATATAGATAATACCCTCATTGTAA TAGTTGATTTTTTCATTCAATATTCAGAAAGCACTTTCATCTCTTTCTCTCGATTCACATGAGTATCAATTTCAACAGGG ACTATGTGAGAGGAGTTTTTTTCGGTCACCTTTTGCAGCAATTTTTGTGGAAAAAATCAGATTGGTGTGCCTTGAGGTGT CTTCCGATCCTCACCTTAATCTTGACTTTGGAGAACAAAAACCTGCAATCAACCTTCTCAGTTTCAACGCGCTTGTTAGA ATTTAAAAATAGATAGATAGGTTGGAAATGAGAAGTATAGCCGTGTAACTATCCCTAACAATGTGATAGAAAATAGTTTG ATCATTAGTGGAAGGAATAGATTACATAGGCTGGAGGAGTTGGAGCATCTCCACACCTCAAATTGCTTATCATGTACCAG AGCCTACTTATAGGCATGATTTCACCGACCTTTCAAAGTCGGTTTCCTATTACCTTATTTTTAGTACATTCTAGAGTATA CTCAACTAGACTAATTAAGGCCATTTCTACTTGATTCCTTTGCTTTCTAGAATTCTTTAGAACCTTGTGGAAATTTGTAG CACACACTTTCAACACTCCTCCTTGATACAAATTTCCATCACTGCAAGCATTACTTCGTAGCTCTTCCAAACTTGCTTTT GACAATGCCTATGTGCATCTGTATAGTGCCATTATGGTTGAGCTTTGTCTTGTAGACCCACTTAACCCCAATGATGTCTT TTCCATGTGGGCAATCTACTAATTCACATGTGTTGTTTTTCTCAATCATCTTTATTAGTGGTAGTAGCGAAGGGTTACTC ACAACAACCTGGCTCTGATACCACTGTTGAAAATTGAAGAAACAAAAAAGTGGTAGGATTTAGCAATATTAGAATGAAAT GCATGAGCTATAAAATCGTATGGTTTTATTACATTCATGGTGGGTACAACACTTAGATTCTTAGTGTTGCCACACCTACA TGGTGAGGCACTAATGCATATTTATAGGCTGGAGTCACCGCTTTGATTATGGCGGTTTATTATATGATACAATTGGAACA TTCTAGAGATAGAAACATTAAGATAGTCTATGTGCTTTCTACAATAATGTAGATTTTAAAAGATAATTCTAGAAACTTGC ATCAATTCTTAACACTTCTCCTTGATGTAAGTTTCTCCAACTTGAAGCATAGTTCGCAGCTCTTTGAATCTTGCTCCTAG CAATGCCTCTATGAATATCTCTGCTAGCTAGTCTTCATCTTGCAATAGTTGAACTTGATCTTCCAGTTGTCTATGCTTCC ACTGTTCATGGTGCAATTTTAGCTTGCTTCACTTAGAAATCATTCTTCTTGCCTCCAACCCATCGACTTGAAACTTATTG TTGTTGGCTATTTTATCACTCTCATCAAATCCAACTAGAGTCATTTTGTTGGACATGGATTGCCTGGGCATGTACTCAAG CGGAACCTCAGAGGCCGTCGTCATAGCAGAGTACATTGGGTGGAGAGGATTTAGTGTTCCTCCACACACTACAAATGATG CACTACATGCCTATTTATAGGCTTGAGTAGTCGGTTTGATTATGGCGGTTTATTATATGATACAATTGGAACATTCTAGA GATAGAAACATTAAGATAGTCTATGTGCTTTCTACAATAATGTAGATTTTAAAAGATAATTCTAGAAACTTGCATCAATT CTTAACAGCGCTTTAATTTAATTAGTGCAGGACTTTGAAAAACAAGAAGGGTTGCAACATCCCATTACTCACGTGGCATT TGACAAAGCCCCTGCTTCCATTGGTGGCGAGTACCTCTTCTTGAGAAGGTTTGAATTGATATCCCACATGAGTTTCCATA GTGGACCAGTGGCTTAGTGAAGCCCATGTGATGTTTGACTTTTGAACTTGCAGCTTCTGCTCTTGAAATCCTTCTTGAAC ACGTACACTTCTCATGCACTTGGTGATGTGTCTGCATGCACTGCTATGAATTTGGCTGAGTAAGTTATGTGCTGTCAAGC ATGCAGCCCATAACTATGGGATCAGTTGCAAGGTTGACTACCGATACCTGCAGCTCTTCCTTCGCGTTCATAAGCACTAT GCTTAATGCTTGCAATGCTGATCACACTGCAGTTCAACATGGTATTGATTACTTCACAACTCTTCTTGCTTACTTTGGGT TTGTTTTACTTCAGGTTTGTTTGATGTAATTGGAATGTATGTTTTTTACAATTGAGTAATTGAGCTTACTATTTGATTAT GCAGGCATTGGAATTTCACAGATCAGAACAAGATTAGGGAGAGAAAGCGGATTTGGTAGGCTTAGCATCGATGCGTCTGA GGTCTGATATATAGCAAAGATAAAGCATCGAGAAATGGAGGCTGCAGAATGCCATAGCAGGTTGTTCATGAAGTTGAATC TTGGCGCCTTGGATATGCTCACAGAGGTATGTGTTTGAAGTTCGTGTTTCGTTTGGAATCTGATTCGTTGAAAATAGTTT GGTGTTGTCACTCCATCTTTACAACTTTTTCCTTCTCTTCTTTTTGTTTTACATGTGGGTTTTCACTTTCTCTGTGCTTT TCCATAGGCTTTCTTCTGATCTGTTAAAATTATTTGTGCAGTTTGACAAGGATACTTTATTAAAATCTTATCTTTCAATT AAAGTAAGCCACAACCAGTAGAAGAGGCTACATAAGTACTTCTTAAGGAAGTGTAAGTTTGTCCTTTGTTACAAGGTAAA ATTTACAAATCTATAATGGAAACATGGTACACTTTGTCTTTTTTCCCTTTTTTTTAATTTAAAATGGTTTATTGATGACG CAAGGGAGGAAGGTTTTTCAAGTGCTTATTATGCCACACGCATACTTCAG
CDS sequence (LotjaGi5g1v0116200.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCGCATGGCACTGATTGGAAAAAACAAGCTTGGATTCGTTGATGGAACGATTCCGATGCCTGCAATTGATGATCCTCT CTATCGGCTTTGGGAGCGGAACAACAACATGGTTGCGTCCTGGTTGTTCAATTCGATTTCGAAGGAACTCACAGCTAGCG TGATCTATTCCACAACAGCGGTGGAAATCTGGACAGATTTGGAAGAACGGTTTCAGCAGCAGAATGGTCCTCGTGTTTTC CAACTCAGAAGGCAACTTCTAGGTCTGACACATGGAACTCAATCTGTCAGTCAGTATTACACTAAGGTGAAAGCAATCTG GGAAGAGCTTGGTGAATATCGCCCTACAATCAATTGTCAGTGCGGAGGTCTTCAACCTTTCTCTGATTATCTGCAAAAAG AGTATGTCATGAGCTTTCTCATGGGATTGAATGAGTCTTTTTCTCAAATTCGTGGTCAAATCCTCCTGCAAGATCCAATT CCATCAATCAATAAGGTTTTTTCTCTAATTGTGCAAGAAGAGAAGCAGCGTGAGATTGGATCTTCAAGTTCTATGGGCAC AGATCAGAGTGCTGCATTTGCTGTGCAGAATTCTTCTCAGTCTTCTTATGGTCGATCTGGTGCACAAGGAAACTATGATA ACAAAGGAAAGGCAGATCCAAGAGGGAACAAGAATCGTCCTCTCTGTTCTCACTGTGGCCTTCTTGGTCACATGAAGGAC AAGTGCTACAAGTTGATTGGTTATCCACCTCATTACAATAAAAATCAGGCAAGAAGTTATCCATCTGCACATCAGGTCTC AGATGTTTCTCATGGTGATTCTCAAACCATTGGTGAGCTCAGCACCAGTTTGACACAACAACAATACCAGCAATTGTTGA CTATGCTGCAATCTCAGATGAATTTAGCTGCTGCTTCTGCCTCAAAGAAACCATCACCTGCTAATTCAGTTGGACTTTGA
Protein sequence (LotjaGi5g1v0116200.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MRMALIGKNKLGFVDGTIPMPAIDDPLYRLWERNNNMVASWLFNSISKELTASVIYSTTAVEIWTDLEERFQQQNGPRVF QLRRQLLGLTHGTQSVSQYYTKVKAIWEELGEYRPTINCQCGGLQPFSDYLQKEYVMSFLMGLNESFSQIRGQILLQDPI PSINKVFSLIVQEEKQREIGSSSSMGTDQSAAFAVQNSSQSSYGRSGAQGNYDNKGKADPRGNKNRPLCSHCGLLGHMKD KCYKLIGYPPHYNKNQARSYPSAHQVSDVSHGDSQTIGELSTSLTQQQYQQLLTMLQSQMNLAAASASKKPSPANSVGL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 7 | 289 | 283 | 3.5E-75 | – | |
| PANTHER | 7 | 289 | 283 | 3.5E-75 | – | |
| Pfam | 31 | 177 | 147 | 1.2E-12 | – | |
| MobiDBLite | 196 | 226 | 31 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi5g1v0116200.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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