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LotjaGi5g1v0117000.1

Overview

Field Value
Gene ID LotjaGi5g1v0117000
Transcript ID LotjaGi5g1v0117000.1
Related isoforms 2
Lotus japonicus genome version Gifu v1.2
Description E3 ubiquitin-protein ligase; TAIR: AT3G58040.1 seven in absentia of Arabidopsis 2; Swiss-Prot: sp|Q9M2P4|SINA2_ARATH E3 ubiquitin-protein ligase SINAT2; TrEMBL-Plants: tr|H8WVC7|H8WVC7_LOTJA E3 ubiquitin-protein ligase; Found in the gene: LotjaGi5g1v0117000
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr5:23894518..23898662) extracted from Lotus japonicus Gifu genome v1.2.

AAATAACTTTTATAAATAAATAATAAATAACCGAAGGATACAAAACTACAAGGGTGCGGTTTCGAAGCAACAGAGAAGAA GAAGAAGGACAATACAACCTTGATGTCAACACTTTCCAACAATTAACACTTTCTTCTTCCATCTCTGTTGCTGTCTTTGA TTTCCGCCACTTCAGAGCTCGTGGTATGAATTCTTCATTGTTTATTGCTCCATTTGCATCCTTTGGTTTTGTTTTTAAAG ATGCTCCGGTTTGCGTTGTTCTTGATAGATACACAACTTGGTAATAAAAGCAGGTGTTTGTTTTTTTGTTTTTTTAATTT TCTAAAAAATTGGTTACTATTGTTTACATCTCGTGACTTTGTTTTTTCCTTTGTTTGATTATGGTTTGAATGCTTGTTTT TTGGTTTGTCTCCAATTTGTGTATCATGTGCTTGGGTTTGTTTGCATTGTGTTTCTATGTTTGTGAATATGAGGCTCGGT TTGCTGCTTCTGGAGGAAAGGCAATGTTGCATTGCCTATGATAAGTTATTGTTTGTGATGATAAATTTGAAGCTTTGTTT TGGTTTCTATCTTTCTTCTGAGATAAAGGTATTATTTCTAGGAAAGTTAATCTCTTTGTTATTTGATTTGCTTTCTTATT TGTTGTTTACTTATTGTAATGGTTTCTCTCATATTGATTGGTTTGATGGCTAGTTCAAAATGGGAGAGAAAGGAAAGAGT GAGATGTGGCAATACTTGGTTTCTTGTAAAATTGAAAGAATAGACACTGCATTATGCAGGGTTCACAAATTGTCATGCGA AGATGGTTAGCTAAATGATGTTCTAATTAGGAATATCAGCCTGAATGTTAACCATGGGGTTTTCCTTGATTTCCTATTAT ATACGATGTACAGTGAAAGGAAGCAGGAAGATATTGTTTGTGGAAAAGATTTGATTGTTGTTCACTCTGGTAATTTTTTG TGAATAATTCTCATAGAAAATGAGAATCTAGTGTTTAAGTAGAGTAAAATGAGGAAGGTACTTAATTTTATCAATTAAAA AATTTGAGCGGACTAAATTTTCTCTAAAATGTATTGAGGAACCCTGAAAACACACATTAGCTATAATAGAATGACTAAGA CCACAACTAAGCCAAAATAATATGATATATGAATTTTTATGAACAATTTATCCCTTTCTTTTTAGTGAGAGGTTATGTTT ACAAATTACATTTTGGACAACTACGTTGAATGTTGTTGGTCTCATGAATATTTTCATTTCTTGAAGTTATGAATTGATAG ACTAATGTTACAAATAGTTTATATTTGCATATGGTTAATGTAAAATAGAGACACTTTAAGCTGTCAAATTTGAAGTTTGC CTACTTACTGGTGCATGTGAATGCATTTGGCTGTGTCACACCACCTGTAAATTATCCAAAGAAGCTATGCGGTTATTCTT ATGACTAAATAAATATCTTGTTTCTTCTTGCGTATGTTCTTATTTTATCTATCTTTTATGGTATATAGATTACCAAAATA TGACTATAGAGGCATATACTATTTGAGTTATATGCATTGACTGACTTTATTACTCTTTACTATTTAACAGATGTACAGTT CTTGTAAAAGGTCTCAACTCACATTTATGAGTCATAGTAACTGAGAAAGAAATATTGTAGATCTGAATTTTCAATGGCTC CAGGAGGCAGTTCTTTCAAAGAAGTCCTTGAGTCTCACCTGATATTTTCAGATTATTAGACCACTATGTCTAAAATGGAG GCCAACATTAATAGTACAGTCACAAAATCTAGGGTTGCGTTGGATGGAAAGATTGGCATTAATTCGAAGAATGATGTCTA TGACTTACTTAAGTGCCCTGTTTGCACAAATTTGATGTATCCACCAATTCATCAGGTGCAATACTCAAAATTTCATTTTA ATTTGAAATCTGCTTTTCTTCCTTCCTTATGTGTTTCTCGTCTGTGCATGTTCAAAAAACTCATTTTTTTTACTTCATGA TGCCAACATAAATTGGATATGGGCATAGAACGGGTGCATTATGTCCATAGTCTTCATAGGGTGATTGCTTTTACATATAT TTCTTTGTTTACTTATTCATCCACTGTGAAGTTTGCACCATTCAGTTTCATGCTAATGCATATTAGACTTCCATTAAGTA CCTTGATAAATCGTTGAACTATATGTAATTAGCTTAGTGATTGATCTTGATTGAAACTTGAAAGAGATGGATGGGGTGAT ACTGTATGAATACCGTTTTGATTAGTTGATAACAATTCATACGGTTCTTTTCAATTAATTTTAAAATTGAATCTATATTA TTTCAATTAGATGTTCCATTCTAATATCCTCCTAAACTTTAATTCTGATTTGTGTGTTTCAGTGCCCTAATGGCCATACA TTATGTTCAAATTGTAAGATTTCTATGCATAACTGTTGCCCAACATGCTTCTGTGATCTTGGGAATATAAGGTGTTTGGC TCTAGAGAAAGTAGCTGAATCGTTGGAGCTTCCTTGCAGAAATCAGAGTCTAGGTTGTCATGATGTATTCCCATACTACA CTATGCTTAAGCATGAGCAAAATTGTCGGTTTCGTCCGTACAAGTGTCCCTATGCTGGATCAGAGTGCTCTGTCATGGGT GACATTCCAACTCTCTTGGTCCATCTCAAGATTGATCACAAGGTTGACGTGCATGATGGATGCACCTTTAACCATCGATA TGTCAAATCAAATCCACATGAAGTTGAAAACGCCATATGGATGCTAACTGTAAGTTATTCTATTTGAATTTTTTTAGACT ATTGCTCTTAGGTTTACAGTGTTGGGTGTATTGGAAGCTACTGATTGCATAAGTAAAATGGTGTAGTCATATATTCTGAT ATGCTAAATTTTGAATTATCTTTTGAAATTTACTGAATAATTCAGTCAAAATGGTTTCATTGCATTGCAGAGAGTAACAT TTTTCTGACCTATATTTGCATATTAACATTTCTCTAGTCCAATTCATGTTGTCATTCTAATAAAAAAGTCCTCCTCTTAC ATTTTGGAGTCTCTTCTATACAGGTTTTTAATTGTTTTGAAAGGTATTTCTGCTTGCACTTTGAGGCATTTTTGCTAGGA AAAGCTCCAGTTTATATAGCCTTTTTACGATTTTTGGGTGAAGACAATGAGGCAAGTAAATTTAGGTTCACTTTGGAAGT TGGTGCAAATAGCCGTAAACTTATATGGCAAGGAATTCCAAGGAGCATTCGCAATAGTCATAGAAAGGTTCGTGATTGTC AAGATGGACTCATCATTCCGAGGCACTTAGCTCTTTATTTTTCTAGTGGGGACAAGCAACAATTGAAGTTCAAGATCACT GGTCATATTTGGAAAGACGAATGAAAAAAAAACGTGAATATTTTAGGAGTTTTACAGCCGTTGTACAGAGCCATAAACTA CATCAGTTTAAGATTTTGGTCTCTACAGAGAATGAAGCTTTTAGTTGTCTTCATGGTTTGTCCTTCAATTCATCACAAAA TCTACTTGAGAACTACATTCAAGCTGGCCTTGAGCTTTCTTTCCTTTTATTTTTATTAAAATAATTATGTGCTTTTGAAT GTAGGAATGAAACTTAGCATTGGTGACTTTCAATTCCAGCTATATTCCTCAGAGCAACACTGATATGAATCGACCACCCT AAAAAGAGGGTCTATGTAAGAAAATGTAAGAGAAAACTATAGGATAATAACTGCACGCTCAGACTCAGTCAGCCAAAGCT AGTTGGTTATTTGTAATCGAATTGTATCTTAATTGTTATAATCAATTAGGAAAGTATTTATTTGGATAGAAACTACCTTG AGATATAAATGAGAGAATATAGCAGGAGAATAGTCAGGAAATCATTAGGAAGTGTAAGGGATAGACATATACTCTTGAAA TACAAAAGGTGTTCTATTCACTCTGATTCTCTTGGTTCCTGTTAGAAATAATGCAAAGGCTTCAAAGCACTTTTGGTCCC CACAAATTCCTATTTTACAAATGGAGTCCCTAAATTATTTTAATAGTACTCTCATTCTCAAACATTATCCTCCGTCAACA TTCTTCCCCTCACCCCTTTTTCTGTAAAAAAAACTAACGTTTTAAACTTACATGTCATCTTTTAA
Download Genomic Sequence

CDS sequence (LotjaGi5g1v0117000.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGCATAACTGTTGCCCAACATGCTTCTGTGATCTTGGGAATATAAGGTGTTTGGCTCTAGAGAAAGTAGCTGAATCGTT GGAGCTTCCTTGCAGAAATCAGAGTCTAGGTTGTCATGATGTATTCCCATACTACACTATGCTTAAGCATGAGCAAAATT GTCGGTTTCGTCCGTACAAGTGTCCCTATGCTGGATCAGAGTGCTCTGTCATGGGTGACATTCCAACTCTCTTGGTCCAT CTCAAGATTGATCACAAGGTTGACGTGCATGATGGATGCACCTTTAACCATCGATATGTCAAATCAAATCCACATGAAGT TGAAAACGCCATATGGATGCTAACTGTTTTTAATTGTTTTGAAAGGTATTTCTGCTTGCACTTTGAGGCATTTTTGCTAG GAAAAGCTCCAGTTTATATAGCCTTTTTACGATTTTTGGGTGAAGACAATGAGGCAAGTAAATTTAGGTTCACTTTGGAA GTTGGTGCAAATAGCCGTAAACTTATATGGCAAGGAATTCCAAGGAGCATTCGCAATAGTCATAGAAAGGTTCGTGATTG TCAAGATGGACTCATCATTCCGAGGCACTTAGCTCTTTATTTTTCTAGTGGGGACAAGCAACAATTGAAGTTCAAGATCA CTGGTCATATTTGGAAAGACGAATGA
Download CDS Sequence

Protein sequence (LotjaGi5g1v0117000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MHNCCPTCFCDLGNIRCLALEKVAESLELPCRNQSLGCHDVFPYYTMLKHEQNCRFRPYKCPYAGSECSVMGDIPTLLVH LKIDHKVDVHDGCTFNHRYVKSNPHEVENAIWMLTVFNCFERYFCLHFEAFLLGKAPVYIAFLRFLGEDNEASKFRFTLE VGANSRKLIWQGIPRSIRNSHRKVRDCQDGLIIPRHLALYFSSGDKQQLKFKITGHIWKDE
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR10315:SF79
2 219 218 1.8E-133 –
PANTHER
PTHR10315
2 219 218 1.8E-133 –
Pfam
PF03145
15 214 200 6.9E-73
IPR018121
Gene3D
G3DSA:3.30.40.10
23 81 59 2.6E-18
IPR013083
SUPERFAMILY
SSF49599
26 215 190 7.19E-41
IPR008974
ProSiteProfiles
PS51081
26 86 61 13.861
IPR013010
Gene3D
G3DSA:2.60.210.10
84 215 132 1.8E-26
IPR008974

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005515
Molecular function Protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
Subterm of
GO:0006511
Biological process Ubiquitin-dependent protein catabolic process The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of a ubiquitin group, or multiple ubiquitin groups, to the protein.
Subterm of
GO:0007275
Biological process Multicellular organism development The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult).
Subterm of
GO:0008270
Molecular function Zinc ion binding Interacting selectively and non-covalently with zinc (Zn) ions.
Subterm of
GO:0042025
Cellular component Host cell nucleus A membrane-bounded organelle as it is found in the host cell in which chromosomes are housed and replicated. The host is defined as the larger of the organisms involved in a symbiotic interaction.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi5g1v0117000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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