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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0118800 |
| Transcript ID | LotjaGi5g1v0118800.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Prohibitin, putative; TAIR: AT5G40770.1 prohibitin 3; Swiss-Prot: sp|O04331|PHB3_ARATH Prohibitin-3, mitochondrial; TrEMBL-Plants: tr|G7L8K5|G7L8K5_MEDTR Prohibitin complex protein; Found in the gene: LotjaGi5g1v0118800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:24880057..24884359) extracted from Lotus japonicus Gifu genome v1.2.
TCCATCATTATCCTTAAAACGATCCAACAATAATTTTGATTTTTGAGTGTTTCCTGAAAACCTTTTTCTTCCTCACCAAG TTGGATTTCGTGAATAAAACCCTCACCCCCCTTTGTCTTAAGCCCTAAACCCCTTTCTCTCTCCAAATCTCCAAATGGGT AGCAACCAAGCCGCAATCTCCTTCCTCACAAACGTCGCCCGCGCCGCCATCGGCCTCGGCGCTGCCTCCGCCGCCGTCAA CTCCTCCCTCTACACCGTCGATGGAGGCCAGCGCGCCGTCCTCTTCGACCGATTCCGCGGCATCCTCGACGACACCGTCG GCGAAGGAACCCATTTCCTCATCCCATGGGTCCAGAAACCCTACATCTTCGACATCCGCACTCGCCCCCACACCTTCTCC TCCATCTCCGGCACCAAGGATCTCCAGATGGTGAACCTCACCCTCCGTGTTCTCTCCCGCCCCGACACCGAACGCCTCCC CGTCATTGTCCAGAATCTCGGTCTGGAGTATGATGAGAAGGTTCTCCCCTCGATCGGCAACGAGGTGCTCAAGGCTGTTG TTGCTCAGTTCAATGCCGATCAGCTCCTCACCGAGCGTCCTCAGGTGTCGGCGCTGGTTCGCGAGAGCCTCCTCCGCCGC GCGAAGGATTTCAACATTCTCCTTGATGATGTTGCCATCACGCACCTTTCCTATGGTGCCGAATTCTCACGTGCTGTTGA GCAGAAGCAGGTGGCGCAGCAGGAGGCGGAGAGGTCTAAGTTTGTGGTGATGAAGGCTGAGCAGGAGCGGCGCGCTGCGA TTATCCGAGCTGAGGGAGAGAGTGAAGCTGCAAAGCTGATTTCTGATGCGACGGCTGCGGTGGGAATGGGGCTGATTGAG CTTAGGATGATTGAGGCTTCGAGGGAAATTGCTGCGACGCTTGCGAAGTCTCCCAATGTGTCTTACCTTCCTGGTGGAAA CAACATGCTCATGGCTCTTAATGCTGGCCGTTGATTGGTGTGGGTAATTGTCTCTTTTAGCTTTTCCTTTTGCCCTCTTG AATTTGATTATAAGTAGATACTTTACTTTCTGCATTTGTATTGGATGTTAACTTGTTCTGAGGGATCATCATTAGTTTAT TTTGGATATTGGTGGTTGCTGTGATTACATTTTTCATTTTAACTATTCGCAGTTAGCTCTTTATAATGTTATCTGTTGAT TGATGCTGGTGATGTTATTGTACCTATTTCCATTGTGTTTGTTTATCCATTGCTGCATTACAATCTGGATGAGGTTGTAT TCTTGTTGGATCATCAAGGGTTGCATTTGGAGGTGGATATTATGATTGCGGTGTGATTACTGTGGCAAATTGTTGGTAGT GTACAGGGTCGTTTCTTGCCTTATTAATTTGATTTAGTACCTTGTGCCGATAGATGTTAGTAGTAAGAGCCAAGGTTGTC AAACGTGCGAGTTTACCGAGACTCATTTTGGGTTTGTAGACTGACATGTAGACTCATAAGAGGTCACCACAAATGAAAAA AATACTGTAGAAAACTTGTCATGGTGTACTAAGATAATATAGACTAGCTCCCTTGAAGATACATTAACCAAATAAGTTTA ACATTTCAACTTCATAATAAAGTAATGTTTAACAAACCATGATAGCAGAATTCAATCTTAGTTAATAGTCCCAGCTTAAG TGGTTCTAAGAGGTGAGAATGCATAGCAAAATAAATTCTTGATAGGGTTTCAACTTGTATGATTTGTGTATGATTTCTAT ATGAATAAAACAGAGGAGAAGGGGAGAGAAGTCAGAATGATGCTATTCTGATTTTTTGTATGAATAAAATAGAGGATTCC ATAATGCATGACAGTGAGTAATATGACTCCAAAAGAGGAGAGGGGGGTTGAACAATGAGTATGTATCGTATCAGCACGGG GAGAAGGGGGAATGATGAGTAAAATAAAACCGACACGAAGATGGTGGAGTGAGAACCTTACGGTTGTCTGGCGGTGGCTG AGCAGTGGTTAACAGCCCTCACGGCAGAATGATGCTACTGAGGCAATGGCAGAAGTACGATGCTTCTCCAACAATGCAGG GGCAACTATGTGATAAGGGTGGTAATACCCTAACTTATCCAAACACAACCATTTTGGACTAAAATTAGGGCAAAACTAAG TTTCCCATTAAACCCGCAGAATCACAGTTAACTCGTGATTCTGATCGAGTTTACCCAACTCTGTCTGAGTATGAAAAAAC GATTCTAGGAGGAGTTTATGAGTCAACTCGCGAGTTTGAAATGGTAAGAGCTTGCCAAACGGTCTGTATGGAGGAACTTT ATTGTGTGCATAAAACATTCATAAAGAGAAAAAGTGTTACAAAGATTAATGACCAGAAATCTTCATGAAGCAGGTAAAAA TGGGCATCAGCTCAGAAAGATCAATTGAGTTGCTTTGCTTGGGAGTTTATGCCTGGAAAGCATAAGAGAAAAACAAGGCC AAGAGATGAAAACATAATACTCATAATACAAATCTTGGCATTACATTTTAAATAAATTCTCCTAACACGTTTTGAAAGGT TGTACTCTGTGATGCATTATGCTCCTTATTCTTGTTTTTACCCTGCAAAATGTTGAAATTAAGTGAAGAAAACATCCTCT GTATTAGGTATACATGTCATACTGCCTAAAAATTTCATCTGTCAAGCAATATCAGAGTAAGAGATGATGATTAGTTTCTG AGCATTTATATGACATAAACTAACAAATCATTAATGGCATGGTACTCATATAAAGTACATGAGATGAAATAAAAACTTTA ACCTTGGGAGGAGCATTTTAGCCTTTCAAGACACCCTTCTACAGCTGAACACCTGAACTGTCCATTCTCCATACAAGTAA TACGTCACATTTGAATTTCGAACCTGTGTTGTAAGTTGCCTTTCCAATATATAATAAAGATGACTGTGATTGCTCTTTCT GGGAGAAGCTACTAGAAGTAGCTTTTGTGGGATGAGAAGTGATGTTTGCAGGATCAACAGTGGATCTTGATATGTTAAGT TAGAGCATTGAACAGTAAGTATGTTTATTCTCTTTTGATATATTAGTATATTACTCATGATTGTGAAGGTTTTCTCGGTT GCATACGATTCAATCAACTATACTGTGTTAGTTTTGGTGTTATATGATTAGGATAACTGTGTTCCTTCTGCCGCTGTAAG TGAATTAATTCTTTGCTCTTTGAAACTAAATATGCTTCCCCTCTTCCACCGTTACAGGTATGGAAAAAAATTGCTTCTTA ATTTTTTTGAATGGGGTACTTTTTAGATTTTGATGTTAACGTTCCTCTAACAGCTCATAAGGATGCAGTATATTAATGTC TTAATCGTCAGCAATCATGACTTGATGATATTTCTTGATTGTTAATTGCTTACGTTCTCTTAATTACAGGGCTCAATGAT ATGGTGTAAGGGCATGCTTGGAATGGTATTGAGGTTTTCCTATGCTGGAAGAAGTTTAGAAGACAAAATTGTGGAGCCCA TCTCAATTGAGCACCATTTCATAGTAATTTTTTTAGAAGAAAAAATTGTAATAAGTTTGAGTGTTTGACTATAAATGGTT GTTTTTTTGAAGTTGTACAATGGTGACTACACGCTTAACTAGTTGGATTAATTAGTTGCTCTTTAATCATCTATTTATCC ATCTTTTTATATATATGAAATTTAACAAGAGATAGTGCAAAGAGAGACACCATCTCAAGAAAACAGTAAAAATAGAAAAC TAAAATGTAGGTGCTTAATCCTGTGAAAAGCAAGTGAAATGCTATGTTTTATTTAGAGGAATGCAAAGGATCAACGCCAT ATTACTTGCGTTTAAATTTCGAGACATGCTCAGCTATGCTTCCACACCACTCCCGTTTTTGTTATCACATTTCTAGTTTT TCGGTTGTGCTAGTTTACATGTTTTTCAATAAACACGGTCGACGATGCTTATAGATCATTTCTGAGGCATCCTCATCAGA TTGTCGACGAAGGACCCATTTTCTCATCCCTTGGGTCTAGAAAACCCACATTTTTGACATCCTCAATCGGCCATCTCCGA CACGGAGGACCTTCAAATGGTCAGCCAATTAGGCAAGGCGATTGGACTTAACTTCCTTTGAATTTTCTTGGTGAATTGGG ATGTGGTTAACTCCCCGAAGGCTTGTGGGATGGGTAACCGTGAATCCAGGCTCTAGAATGTGTCCTTGATTGGGAAACTT ATTTGGAAGTTGCTTTCTCCTAAATCCTAATGATAGCTTTTGGACTCAAATTATCAAGGCCTA
CDS sequence (LotjaGi5g1v0118800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGTAGCAACCAAGCCGCAATCTCCTTCCTCACAAACGTCGCCCGCGCCGCCATCGGCCTCGGCGCTGCCTCCGCCGC CGTCAACTCCTCCCTCTACACCGTCGATGGAGGCCAGCGCGCCGTCCTCTTCGACCGATTCCGCGGCATCCTCGACGACA CCGTCGGCGAAGGAACCCATTTCCTCATCCCATGGGTCCAGAAACCCTACATCTTCGACATCCGCACTCGCCCCCACACC TTCTCCTCCATCTCCGGCACCAAGGATCTCCAGATGGTGAACCTCACCCTCCGTGTTCTCTCCCGCCCCGACACCGAACG CCTCCCCGTCATTGTCCAGAATCTCGGTCTGGAGTATGATGAGAAGGTTCTCCCCTCGATCGGCAACGAGGTGCTCAAGG CTGTTGTTGCTCAGTTCAATGCCGATCAGCTCCTCACCGAGCGTCCTCAGGTGTCGGCGCTGGTTCGCGAGAGCCTCCTC CGCCGCGCGAAGGATTTCAACATTCTCCTTGATGATGTTGCCATCACGCACCTTTCCTATGGTGCCGAATTCTCACGTGC TGTTGAGCAGAAGCAGGTGGCGCAGCAGGAGGCGGAGAGGTCTAAGTTTGTGGTGATGAAGGCTGAGCAGGAGCGGCGCG CTGCGATTATCCGAGCTGAGGGAGAGAGTGAAGCTGCAAAGCTGATTTCTGATGCGACGGCTGCGGTGGGAATGGGGCTG ATTGAGCTTAGGATGATTGAGGCTTCGAGGGAAATTGCTGCGACGCTTGCGAAGTCTCCCAATGTGTCTTACCTTCCTGG TGGAAACAACATGCTCATGGCTCTTAATGCTGGCCGTTGA
Protein sequence (LotjaGi5g1v0118800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGSNQAAISFLTNVARAAIGLGAASAAVNSSLYTVDGGQRAVLFDRFRGILDDTVGEGTHFLIPWVQKPYIFDIRTRPHT FSSISGTKDLQMVNLTLRVLSRPDTERLPVIVQNLGLEYDEKVLPSIGNEVLKAVVAQFNADQLLTERPQVSALVRESLL RRAKDFNILLDDVAITHLSYGAEFSRAVEQKQVAQQEAERSKFVVMKAEQERRAAIIRAEGESEAAKLISDATAAVGMGL IELRMIEASREIAATLAKSPNVSYLPGGNNMLMALNAGR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_GRAM_POSITIVE | 1 | 26 | 26 | - | – | |
| Phobius | 1 | 17 | 17 | - | – | |
| SignalP_GRAM_NEGATIVE | 1 | 17 | 17 | - | – | |
| Phobius | 1 | 4 | 4 | - | – | |
| PANTHER | 3 | 278 | 276 | 7.7E-170 | – | |
| PANTHER | 3 | 278 | 276 | 7.7E-170 | ||
| Phobius | 5 | 12 | 8 | - | – | |
| Phobius | 13 | 17 | 5 | - | – | |
| Phobius | 18 | 279 | 262 | - | – | |
| SMART | 31 | 192 | 162 | 5.9E-46 | ||
| CDD | 32 | 226 | 195 | 6.36376E-94 | ||
| Pfam | 34 | 212 | 179 | 2.5E-22 | ||
| SUPERFAMILY | 63 | 199 | 137 | 1.44E-16 | ||
| PRINTS | 75 | 91 | 17 | 1.5E-69 | ||
| PRINTS | 93 | 112 | 20 | 1.5E-69 | ||
| PRINTS | 116 | 134 | 19 | 1.5E-69 | ||
| PRINTS | 139 | 155 | 17 | 1.5E-69 | ||
| PRINTS | 162 | 181 | 20 | 1.5E-69 | ||
| PRINTS | 187 | 210 | 24 | 1.5E-69 | ||
| PRINTS | 210 | 226 | 17 | 1.5E-69 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. |
Expression pattern of LotjaGi5g1v0118800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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