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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0121600 |
| Transcript ID | LotjaGi5g1v0121600.5 |
| Related isoforms 4 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | 70 kDa heat shock protein; TAIR: AT5G02500.1 heat shock cognate protein 70-1; Swiss-Prot: sp|P22953|MD37E_ARATH Probable mediator of RNA polymerase II transcription subunit 37e; TrEMBL-Plants: tr|A0A151U4E0|A0A151U4E0_CAJCA Heat shock cognate 70 kDa protein; Found in the gene: LotjaGi5g1v0121600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:25470347..25473058) extracted from Lotus japonicus Gifu genome v1.2.
TACACCACCATGGCCGGTAAAGGAGAGGGCCCTGCCATCGGGATCGATCTCGGAACGACGTACTCCTGTGTGGGCGTTTG GCAGCATGATCGCGTTGAGATCATCGCCAACGACCAGGGGAACAGAACCACTCCGTCTTACGTTGCCTTCACTGACACCG AGCGTCTCATTGGTGATGCCGCCAAGAATCAGGTCGCCATGAACCCCATCAACACCGTTTTTGGTAAGATCTGCTATACC AAACCTTTTACTCAGTTCTTGTTCTAGTTTGTTGTTATATTACAAACATGTAAGATCTTTGTTTTTTGTTTTTGTTTTTG TTGGTTTTACGTGTTTGATTCGGATTGGATCTAAGGACTTTTCCGATCTGTGTTTAGTATCCAGATTTGGTTCATGTGTT TCGTATTCATTCGCTATGATGCTTGATATGATTTTGTTTGATATTGTGAAATTGTTACACGTGTTGAAATTGTAACATGA GGCCTGTGAATGAGTGATAGCTTTTTTATCAATCGGTTTTAGATTCCTTCGCTGCGGTGTTTGATTTATTACGATTTTGC AAGTCTTGTGAAAATTTTACACGTGTTGAATCTAATTTAGTCGAGTCGATGAGTCTATGATCTTTAGGAAATTAGCAATC TTCAAGTAAGTGGAAGCTTCTTCTTAACTTTGTTAATTCAAATCGGATTCTTAGAACTTTTTGATTGATTGGTTATTCTC GTATTTCATGATTGAGTTTTGTGTTGGAGCATGTGTAAATTCTTCTGTACAAATTGGTACATTAAAGTGAGATAGAGAGG AGAGTAAACAGAGGTAGAGAGAGTAGTATTGGATTAAGTGTTGCATAAGACAGTTCTTTGTTTACCTTAGTGCTTCATGA TTTGTATTTATTAAAATTGATCATATGTTTTGAATATTATTAAATAAATTGATTTATGAAATTTAAGTTTCATAACATGC TTTATCTGTCTTGCAGATGCTAAGAGGTTGATTGGCCGAAGGGTCAGTGATGCCTCTGTTCAGAGTGACATGAAATTGTG GCCTTTTAAGGTTAATTCTGGGCCTGCTGAGAAGCCTATGATCCAGGTCAGCTACAAGGGTGAAGACAAGCAGTTTGCTG CAGAGGAAATCTCATCTATGGTGCTCATGAAAATGCGTGAGATTGCTGAAGCTTATCTTGGTTCCACAATCAAGAATGCT GTTGTCACAGTTCCTGCATACTTCAATGATTCTCAGCGTCAAGCTACCAAGGATGCTGGAGTCATTGCCGGTCTTAATGT CATGCGTATCATCAATGAGCCTACTGCTGCAGCCATTGCTTATGGTCTTGACAAGAAGGCTACAAGTGTTGGTGAGAAGA ATGTGTTGATTTTTGATCTTGGAGGTGGTACTTTTGATGTCTCTTTGCTTACAATTGAAGAGGGTATCTTTGAGGTGAAA GCCACCGCTGGGGACACCCATCTTGGAGGTGAGGATTTTGATAATAGGATGGTTAACCATTTTGTCCAAGAATTTAAGAG GAAGAACAAGAAGGATATCTCTGGCAACCCCAGAGCACTCAGGAGGTTGAGGACTGCATGTGAGAGGGCGAAGAGAACTC TATCATCCACTGCCCAAACCACCATTGAAATTGACTCTCTTTATGAGGGAATTGACTTCTACTCTCCCATTACTCGTGCC AGATTTGAGGAGCTCAACATGGATCTCTTCAGGAAGTGTATGGAACCAGTTGAGAAGTGTTTGAGAGATGCTAAGATGGA CAAGAAGTCTGTCCATGATGTTGTGCTTGTTGGTGGCTCTACGAGAATTCCCAAGGTTCAGCAACTCCTCCAGGACTTCT TCAATGGCAAGGAGCTCTGCAAGAGCATTAACCCTGATGAGGCTGTTGCATATGGTGCTGCTGTTCAAGCTGCTATCTTG AGTGGTGAGGGTAATGAGAAGGTCCAGGATCTACTTCTCCTTGATGTTACCCCACTCTCTCTTGGTTTGGAAACTGCCGG TGGTGTGATGACAGTCTTGATCCCTAGGAACACCACAATCCCAACAAAGAAAGAACAGGTCTTCTCTACCTATTCTGACA ACCAGCCCGGTGTGTTGATTCAGGTTTATGAAGGTGAGAGAACTAGAACCAGGGATAACAATTTGCTTGGCAAATTTGAA CTCTCTGGCATTCCACCAGCACCCAGGGGTGTTCCTCAGATTACTGTCTGCTTTGACATTGATGCCAATGGTATCTTGAA TGTCTCTGCTGAAGACAAGACCACTGGCCAGAAGAACAAGATCACCATCACCAATGACAAGGGTAGGTTGTCAAAGGAAG ACATTGAGAAGATGGTTCAAGAGGCTGAGAAGTACAAGTCTGAAGATGAAGAGCACAAGAAGAAGGTGGAGGCAAAGAAT GCATTGGAGAACTATGCTTACAACATGAGGAATACCATCAAGGATGAGAAGATTGGGGGAAAGCTTGACCCAGCTGACAA GAAGAAGATTGAGGATGCCATTGAGCAGGCCATTCAGTGGCTAGACAGCAACCAGCTTGCGGAGGCTGATGAGTTTGAGG ACAAGATGAAGGAGTTGGAGAGCATCTGCAACCCTATCATCGCCAAGATGTACCAGGGAGCTGGTGGCCCGGATATGGGT GGTGCTCCTATGGATGATGATACTCCTGCTGGTGGAAGCGGTGCTGGTCCCAAGATTGAGGAAGTCGACTAA
CDS sequence (LotjaGi5g1v0121600.5) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCCGGTAAAGGAGAGGGCCCTGCCATCGGGATCGATCTCGGAACGACGTACTCCTGTGTGGGCGTTTGGCAGCATGA TCGCGTTGAGATCATCGCCAACGACCAGGGGAACAGAACCACTCCGTCTTACGTTGCCTTCACTGACACCGAGCGTCTCA TTGGTGATGCCGCCAAGAATCAGGTCGCCATGAACCCCATCAACACCGTTTTTGATGCTAAGAGGTTGATTGGCCGAAGG GTCAGTGATGCCTCTGTTCAGAGTGACATGAAATTGTGGCCTTTTAAGGTTAATTCTGGGCCTGCTGAGAAGCCTATGAT CCAGGTCAGCTACAAGGGTGAAGACAAGCAGTTTGCTGCAGAGGAAATCTCATCTATGGTGCTCATGAAAATGCGTGAGA TTGCTGAAGCTTATCTTGGTTCCACAATCAAGAATGCTGTTGTCACAGTTCCTGCATACTTCAATGATTCTCAGCGTCAA GCTACCAAGGATGCTGGAGTCATTGCCGGTCTTAATGTCATGCGTATCATCAATGAGCCTACTGCTGCAGCCATTGCTTA TGGTCTTGACAAGAAGGCTACAAGTGTTGGTGAGAAGAATGTGTTGATTTTTGATCTTGGAGGTGGTACTTTTGATGTCT CTTTGCTTACAATTGAAGAGGGTATCTTTGAGGTGAAAGCCACCGCTGGGGACACCCATCTTGGAGGTGAGGATTTTGAT AATAGGATGGTTAACCATTTTGTCCAAGAATTTAAGAGGAAGAACAAGAAGGATATCTCTGGCAACCCCAGAGCACTCAG GAGGTTGAGGACTGCATGTGAGAGGTTCTACTCTCCCATTACTCGTGCCAGATTTGAGGAGCTCAACATGGATCTCTTCA GGAAGTGTATGGAACCAGTTGAGAAGTGTTTGAGAGATGCTAAGATGGACAAGAAGTCTGTCCATGATGTTGTGCTTGTT GGTGGCTCTACGAGAATTCCCAAGGTTCAGCAACTCCTCCAGGACTTCTTCAATGGCAAGGAGCTCTGCAAGAGCATTAA CCCTGATGAGGCTGTTGCATATGGTGCTGCTGTTCAAGCTGCTATCTTGAGTGGTGAGGGTAATGAGAAGGTCCAGGATC TACTTCTCCTTGATGTTACCCCACTCTCTCTTGGTTTGGAAACTGCCGGTGGTGTGATGACAGTCTTGATCCCTAGGAAC ACCACAATCCCAACAAAGAAAGAACAGGTCTTCTCTACCTATTCTGACAACCAGCCCGGTGTGTTGATTCAGGTTTATGA AGGTGAGAGAACTAGAACCAGGGATAACAATTTGCTTGGCAAATTTGAACTCTCTGGCATTCCACCAGCACCCAGGGGTG TTCCTCAGATTACTGTCTGCTTTGACATTGATGCCAATGGTATCTTGAATGTCTCTGCTGAAGACAAGACCACTGGCCAG AAGAACAAGATCACCATCACCAATGACAAGGGTAGGTTGTCAAAGGAAGACATTGAGAAGATGGTTCAAGAGGCTGAGAA GTACAAGTCTGAAGATGAAGAGCACAAGAAGAAGGTGGAGGCAAAGAATGCATTGGAGAACTATGCTTACAACATGAGGA ATACCATCAAGGATGAGAAGATTGGGGGAAAGCTTGACCCAGCTGACAAGAAGAAGATTGAGGATGCCATTGAGCAGGCC ATTCAGTGGCTAGACAGCAACCAGCTTGCGGAGGCTGATGAGTTTGAGGACAAGATGAAGGAGTTGGAGAGCATCTGCAA CCCTATCATCGCCAAGATGTACCAGGGAGCTGGTGGCCCGGATATGGGTGGTGCTCCTATGGATGATGATACTCCTGCTG GTGGAAGCGGTGCTGGTCCCAAGATTGAGGAAGTCGACTAA
Protein sequence (LotjaGi5g1v0121600.5) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAGKGEGPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPINTVFDAKRLIGRR VSDASVQSDMKLWPFKVNSGPAEKPMIQVSYKGEDKQFAAEEISSMVLMKMREIAEAYLGSTIKNAVVTVPAYFNDSQRQ ATKDAGVIAGLNVMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFD NRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERFYSPITRARFEELNMDLFRKCMEPVEKCLRDAKMDKKSVHDVVLV GGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQAAILSGEGNEKVQDLLLLDVTPLSLGLETAGGVMTVLIPRN TTIPTKKEQVFSTYSDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQITVCFDIDANGILNVSAEDKTTGQ KNKITITNDKGRLSKEDIEKMVQEAEKYKSEDEEHKKKVEAKNALENYAYNMRNTIKDEKIGGKLDPADKKKIEDAIEQA IQWLDSNQLAEADEFEDKMKELESICNPIIAKMYQGAGGPDMGGAPMDDDTPAGGSGAGPKIEEVD
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 4 | 275 | 272 | 0.0 | ||
| PANTHER | 4 | 275 | 272 | 0.0 | – | |
| SUPERFAMILY | 8 | 191 | 184 | 1.37E-68 | ||
| PRINTS | 8 | 21 | 14 | 2.1E-81 | – | |
| Pfam | 9 | 275 | 267 | 1.3E-130 | ||
| CDD | 9 | 364 | 356 | 0.0 | – | |
| ProSitePatterns | 12 | 19 | 8 | - | ||
| PRINTS | 36 | 48 | 13 | 2.1E-81 | – | |
| PRINTS | 58 | 66 | 9 | 2.1E-81 | – | |
| Gene3D | 71 | 122 | 52 | 3.5E-29 | – | |
| PRINTS | 146 | 166 | 21 | 2.1E-81 | – | |
| SUPERFAMILY | 198 | 365 | 168 | 3.42E-57 | ||
| Gene3D | 199 | 276 | 78 | 2.9E-25 | – | |
| ProSitePatterns | 203 | 216 | 14 | - | ||
| PANTHER | 276 | 605 | 330 | 0.0 | ||
| PANTHER | 276 | 605 | 330 | 0.0 | – | |
| Gene3D | 277 | 289 | 13 | 1.6E-35 | – | |
| Pfam | 279 | 595 | 317 | 5.3E-118 | ||
| Gene3D | 290 | 348 | 59 | 1.6E-35 | – | |
| PRINTS | 314 | 330 | 17 | 2.1E-81 | – | |
| ProSitePatterns | 317 | 331 | 15 | - | ||
| PRINTS | 346 | 366 | 21 | 2.1E-81 | – | |
| Gene3D | 349 | 361 | 13 | 1.6E-35 | – | |
| Gene3D | 364 | 492 | 129 | 2.7E-64 | ||
| SUPERFAMILY | 369 | 526 | 158 | 5.89E-65 | ||
| PRINTS | 373 | 392 | 20 | 2.1E-81 | – | |
| PRINTS | 454 | 470 | 17 | 2.1E-81 | – | |
| Gene3D | 493 | 596 | 104 | 8.4E-41 | ||
| Coils | 498 | 518 | 21 | - | – | |
| SUPERFAMILY | 520 | 602 | 83 | 4.32E-32 | ||
| MobiDBLite | 595 | 626 | 32 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi5g1v0121600.5, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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