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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0122600 |
| Transcript ID | LotjaGi5g1v0122600.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Cytochrome c biogenesis B; TAIR: ATMG00110.1 cytochrome C biogenesis 206 (ChrM); Swiss-Prot: sp|P93280|CCMB_ARATH Putative cytochrome c biogenesis ccmB-like mitochondrial protein; TrEMBL-Plants: tr|M1FP81|M1FP81_SOYBN Cytochrome c biogenesis B; Found in the gene: LotjaGi5g1v0122600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:25865597..25866217) extracted from Lotus japonicus Gifu genome v1.2.
ATGAGACGACTCTTTCTTGAACTATATAATAAAAAGATCTTCCCCTCCACACCAATCACGAGTTTTTCTCCATTCCTCTC GTATATCGTCGTAACGCCCTTAATACTAGGTTTTGAAAAAGACTTTTCATGTCATTCCCATTTAGGTCTGATTCGGATCC CTTCGTTGTTTTCTTTTCCTCCCGCACCTTTTCCTCGAAATGAGAAAGAAGATGGTACACTCGAATTGTATTATTTAAGT GCTTATTGCTTGCCAAAGATCCTACTTCTACAATTGGTAGGTCACCGGGTTATTCAAATAAGTTGTGTTTTATGTGGTTT TCCCATGTTACAACTTCCGTACCAATTCGGTCGATCCGGAATGGATCGGTTAAACATTCCATTAGGGAGCCTGGTCTTTA CTCTTCTGTGTGGTATTCATTCTCGTTTAGCTCTTGGAATCACATCCAGCAGTGGTTGGAACAGCTCGCAAAATCCAACC ACTTCACCTACTTCATTGCCCCCAACCGTTTCTCGTACCTCTATTGAAACAGAATGGTTTCATGTTCTTTCATCGATTGG TTATTCCTCTCCGTTCGTATCTCTTTTTCCAATTGCGGTCTCAATGAGTTTACAAGATTGA
CDS sequence (LotjaGi5g1v0122600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGACGACTCTTTCTTGAACTATATAATAAAAAGATCTTCCCCTCCACACCAATCACGAGTTTTTCTCCATTCCTCTC GTATATCGTCGTAACGCCCTTAATACTAGGTTTTGAAAAAGACTTTTCATGTCATTCCCATTTAGGTCTGATTCGGATCC CTTCGTTGTTTTCTTTTCCTCCCGCACCTTTTCCTCGAAATGAGAAAGAAGATGGTACACTCGAATTGTATTATTTAAGT GCTTATTGCTTGCCAAAGATCCTACTTCTACAATTGGTAGGTCACCGGGTTATTCAAATAAGTTGTGTTTTATGTGGTTT TCCCATGTTACAACTTCCGTACCAATTCGGTCGATCCGGAATGGATCGGTTAAACATTCCATTAGGGAGCCTGGTCTTTA CTCTTCTGTGTGGTATTCATTCTCGTTTAGCTCTTGGAATCACATCCAGCAGTGGTTGGAACAGCTCGCAAAATCCAACC ACTTCACCTACTTCATTGCCCCCAACCGTTTCTCGTACCTCTATTGAAACAGAATGGTTTCATGTTCTTTCATCGATTGG TTATTCCTCTCCGTTCGTATCTCTTTTTCCAATTGCGGTCTCAATGAGTTTACAAGATTGA
Protein sequence (LotjaGi5g1v0122600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MRRLFLELYNKKIFPSTPITSFSPFLSYIVVTPLILGFEKDFSCHSHLGLIRIPSLFSFPPAPFPRNEKEDGTLELYYLS AYCLPKILLLQLVGHRVIQISCVLCGFPMLQLPYQFGRSGMDRLNIPLGSLVFTLLCGIHSRLALGITSSSGWNSSQNPT TSPTSLPPTVSRTSIETEWFHVLSSIGYSSPFVSLFPIAVSMSLQD
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 205 | 205 | 2.0E-101 | ||
| Phobius | 1 | 20 | 20 | - | – | |
| TMHMM | 13 | 35 | 23 | - | – | |
| Phobius | 21 | 38 | 18 | - | – | |
| PRINTS | 24 | 45 | 22 | 1.2E-5 | – | |
| Phobius | 39 | 86 | 48 | - | – | |
| PRINTS | 71 | 94 | 24 | 1.2E-5 | – | |
| Phobius | 87 | 112 | 26 | - | – | |
| Phobius | 113 | 123 | 11 | - | – | |
| Phobius | 124 | 145 | 22 | - | – | |
| PRINTS | 125 | 148 | 24 | 1.2E-5 | – | |
| Phobius | 146 | 178 | 33 | - | – | |
| MobiDBLite | 151 | 170 | 20 | - | – | |
| Phobius | 179 | 200 | 22 | - | – | |
| PRINTS | 182 | 205 | 24 | 1.2E-5 | – | |
| Phobius | 201 | 206 | 6 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Heme transporter activity | Enables the directed movement of heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring, into, out of or within a cell, or between cells. | ||
| Biological process | Heme transport | The directed movement of heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. | ||
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. | ||
| Biological process | Cytochrome complex assembly | The aggregation, arrangement and bonding together of a cytochrome complex. A cytochrome complex is a protein complex in which at least one of the proteins is a cytochrome, i.e. a heme-containing protein involved in catalysis of redox reactions. |
Expression pattern of LotjaGi5g1v0122600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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