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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0123100 |
| Transcript ID | LotjaGi5g1v0123100.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | NADH-ubiquinone oxidoreductase chain 1; TAIR: ATMG01275.1 NADH dehydrogenase 1A (ChrM); Swiss-Prot: sp|Q01300|NU1M_PETHY NADH-ubiquinone oxidoreductase chain 1; TrEMBL-Plants: tr|R4IUS3|R4IUS3_VICFA NADH-ubiquinone oxidoreductase chain 1; Found in the gene: LotjaGi5g1v0123100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:25901422..25901811) extracted from Lotus japonicus Gifu genome v1.2.
ACGTACATAGCTGTTCCAGCTGAAATACTTGGAATAATTCTACCACTTCTACTAGGAGTAGCCTTTTTAGTGCTAGCTGA ACGTAAAGTAATGGCTTTTGTGCAACGTCGAAAGGGTCCTGATGTAGTGGGATCGTTCGGATTGTTACAACCTCTAGCAG ATGGTTTGAAATTGATTCTAAAAGAACCTATTTCACCAAGTAGTGCTAATTTCTCCCTTTTTAGAATGGCTCCAGTGGCT ACATTTATGTTAAGTCTGGTCGCTCGGGCCGTTGTACCTTTTGATTATGGTATGGTATTGTCAGATTCGAACATAGGGCT ACTTTATTTGTTTGCCATATCTTCGTTAGGTGTTTATGGAATTATTACAGCAGGTTGGTCTAGTAATTAG
CDS sequence (LotjaGi5g1v0123100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTTTTGTGCAACGTCGAAAGGGTCCTGATGTAGTGGGATCGTTCGGATTGTTACAACCTCTAGCAGATGGTTTGAA ATTGATTCTAAAAGAACCTATTTCACCAAGTAGTGCTAATTTCTCCCTTTTTAGAATGGCTCCAGTGGCTACATTTATGT TAAGTCTGGTCGCTCGGGCCGTTGTACCTTTTGATTATGGTATGGTATTGTCAGATTCGAACATAGGGCTACTTTATTTG TTTGCCATATCTTCGTTAGGTGTTTATGGAATTATTACAGCAGGTTGGTCTAGTAATTAG
Protein sequence (LotjaGi5g1v0123100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAFVQRRKGPDVVGSFGLLQPLADGLKLILKEPISPSSANFSLFRMAPVATFMLSLVARAVVPFDYGMVLSDSNIGLLYL FAISSLGVYGIITAGWSSN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 99 | 99 | 2.4E-65 | – | |
| PANTHER | 1 | 99 | 99 | 2.4E-65 | ||
| Pfam | 1 | 99 | 99 | 1.6E-33 | ||
| Phobius | 1 | 11 | 11 | - | – | |
| Phobius | 12 | 30 | 19 | - | – | |
| ProSitePatterns | 17 | 32 | 16 | - | ||
| Phobius | 31 | 41 | 11 | - | – | |
| TMHMM | 41 | 60 | 20 | - | – | |
| Phobius | 42 | 62 | 21 | - | – | |
| Phobius | 63 | 73 | 11 | - | – | |
| Phobius | 74 | 96 | 23 | - | – | |
| TMHMM | 75 | 97 | 23 | - | – | |
| Phobius | 97 | 99 | 3 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. | ||
| Biological process | Oxidation-reduction process | A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. |
Expression pattern of LotjaGi5g1v0123100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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