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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0134000 |
| Transcript ID | LotjaGi5g1v0134000.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Protein nrt1 ptr family 1.2; TAIR: AT1G52190.1 Major facilitator superfamily protein; Swiss-Prot: sp|Q9M817|PTR6_ARATH Protein NRT1/ PTR FAMILY 1.2; TrEMBL-Plants: tr|A0A1J7GRG6|A0A1J7GRG6_LUPAN Uncharacterized protein; Found in the gene: LotjaGi5g1v0134000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:31509163..31513501) extracted from Lotus japonicus Gifu genome v1.2.
AATAAATGTCTAACACCAAACTCTTCAGTTGAACTCCTCTGTGCTTATTTCCTGCAAACAATCTCTTGGTTTTGATGTTT TGAATACCTTGTTTGAGAGAGTGAAAAACAAAATGGAGTACTCAAGTGTTGCAGATGACAAGTTGATAGAAAATAGCATT ATCTCTTCCTCTTCTGAACAACCCAGAAAAGGTGGATTAAGAACCATGCCCTTCATCATAGGTAACCACGTACCTTATTT CATTTCATTCACTCTAGTGCTTAAAGTTTGTTACTTCTTTATTGGTTGACTCTTTATTTTTTTTAAATGTATGATGAATC AGTGAACGAGTGTCTGGAAAAGGTTTCAAGCTATGGGATTTTGCCCAACATGATATTGTACTTGAGGGATGACTATCACA TGCCCATTGCCAAAGCCACCAATGTTCTCTACACTTGGTCTGCTATGTCCAACATCTTGTCCATCTTTGGGGCTTTCCTC TCTGATTCTTACTTGGGTCGCTTCAGTGTCATCTTCATTGGTTCCTTCTCAAGCCTCCTTGTACGTATTTGTTGCTTGCA TCTCAATCTCAATCTCATCTTTCTCTGATGTTAATGCTCTAATGCCTAACATTGTCAATATTCAATCATGGTTGTTAGGG ATTGGATTAGTGATTTTTGTATTTTTAGGAAATAATTCAAAGGATTTCAAATATAGGAAAATTGGATTGATGTATTTTAA TTTATACCATTGGGGAAATGTGTTGTTTGAACAAATTTTGTAGAATGATGGTTTTTATGAGAAAGTTTTTTTTTTGTTAG AAGCTTTTTTGTAATGCCTTTCTGGGGTGATGTTCTTCTTTACTCAGACCTCTTTCATGAATATATATAAATTTGTTATT ATGGTTCAGAACTAGTATATTTCTGCCCCAAGGTAAGAGGGAGAATGAAAATCTTTCTTAGTTTACTTATATCTATCATA GCTTGATTGAAAGAAATCTGAATAACTTTGCACAGCCAAAGAAATTTCCTTGGCCCAAACTAATCCAAGATACCAAAACA CTCACATAGTAGCATAATCTTTTATTTAAATGAGAGCCTTGAACTCTTTGTAAATAGTTAATCTATATCTCATGTTTGTG GCTAAAGCTTCAATGCTCCACTTTTTTATTTTGTAATTGATTTAGTTTCTGACTGCAGTAGGTCAGAGTCTTTAGTCATG GTTTGATTTTGTGTACCCTTTCAAAGGGTGTATATACCATTTGTTTTCCCAAGGAAATCTAGGAAATAATTTTTTTTAAG AAAACAAGGGATAAATTACTCTTTAAAGTTTATATTACTATTGTGATGCTGATATTTCTTGTATCCCAGGGTGTAACTAT TCTGTGGCTAACTGCCATGATCCCTGTGCTAAGACCTTCCTGTGAACTCTGCAACTCTGCTACGGCAACCCAACTTCTAC TTTTATTCCTTTCCTTTGGATTAATTTCAATTGGAGCTGGTTGCATTAGACCTTGTTCCATAGCTTTTGGAGCAGATCAA CTTACTATTAAAGAAAATTCCAAAAATGAGAGGCTCTTGGATAGCTACTTCAATTGGTACTATACCTCAATTGGAGCTTC AACCATTGTTGCATTGGGTGTAATCACATACATTCAAGAAAACCTGGGATGGAAATTTGGTTTCGGAGTACCTGCAGCAC TAATGCTTATATCCGCTCTCAGTTTCACTCTTGGTTCCCCATTCTATGTCAAATTGAAGCCAAGTAAGAGCCTGCTCACT GGTTTTGTACAAGTAGCTGTTGCGGCCACAAAGAATAGAAAACTGAGTCTTCCTGTTGGCAATTTTGAACTATATTATCA AGACCGTGATTCCGAGCCAATAGTCCCTACTGATAGCCTTAGGTACTTCACTGGTTGCTCTCATGGATTAGTCGTGCATA ATGCGGGAAGAGTCTAATACTATTTACCCCCATTAAATTCATATGAAAAACTGCAAATGATATTTATTGTCACTGTTGCT AATGACAGTCATTTATTAGCTTTCTATTAGAATTTGGACTGGGTCTAACTCTACCTCAAAAGCTAGCTCACGGACAATCA ACATATAATCCTATTATACAGGGAAACTAGGAAACAAATAATAGGAAAGTAGGAAACAAATTCACAATGATATCGTATTA GACCGAAATCTAATATGATATCAAAGCGCCTATCCTAGATCCATTATTAGGCCACCCGTTGACTTGACCCCGTAGGGATA TCACATGATTGGGAAAAGGGCATTGACCAGACCCGCCAGGTAGATATCCCACGATGGAATATGGTATTCCAATGATGACC TTTATCCTTCAGATGTCCAGTCCTGGACGTAAAGGGGGTGTTGACTCCCACATTGTCTAGCAATATGTCTAATGAAGAAC TTATAAATGGTTAGAAAATCCTCTCCTCTGAGCTAGCTTCTGAGGTAGAGTTAGGCCCAACCAGAATTCTAATACTTTCA TCAAGGAAATGCCATTGTCTTATTCTTCATTTAGGAGTGCTTTGATCTACTCTAGACAGCACTTCAGGAAACACAAGCTG CATCATTTTGACAATTTCTTGTCCTATTTTTTGTAGCTCAATATTTTTAGAGTGAACTAACATCTTCTTCCCTATATAGC TGTTTGAACAAAGCTTGCATAATAAGAAATCCTGAGACAGACTTAAACCCGGATGGATCAGTTTCAAACCCATGGAGCCT CTGCACTGTAAAACAGATGGAGTCACTGAAGTCGTTGCTGCGAGTCCTTCCTATGTGGTCCACAGGCATCTTTATGATGA TGACTCAAAGTTCATTCTCCACTCTTCAAGCAAAGACCATGAACCGAAGGCTATTTGGCAATTTCGAGATACCTGCTGGA TCCTTCACTGTTATCATGGTAATCACCTTATCAATAATCATTCCGTTATATGACCGCGTAGCAGTTCCCATACTAGCAAA ATACACAGGCCAGCCTAGAGGGTTCAGTTCAAAAACTCGCATTGGGATTGGATTGCTGTTTGTAATTGTAGCAAAGGCAA CATCAGCTGTAGTCGAAACCATGAGACGAAATGTCGCCATCGAAGAAGGGTTCGAGTACCAACCTTATGCTGTGATCAAC ATGTCAGCTTTATGGCTAGTTCCGGAGTTTGTCTTGCTCGGAATAGCTGAGGCGTTCACGCCGGTTGGGCAGGTTGAGTT TTTCTACTCTCATTTCCCCAAGAGTATGTCTAGTTTCGCAATGGCTCTCTTCACTCTGGAGCTAGCTGCTGCTGATGTAG TGGGAAGTGTGGTGGTGAATGTTGTGGACAAGGTCACTAGTTTAGGAGGGAACGGGAGCTGGCTATCAACTAATATCAAT AGGGGCCATCTGAATTACTATTATGTACTGCTATGTTTCTTAGGTATGGTTAACTTCCTCTACTATCTGGCTATTTGTTG GGCTTATGGGCCTGATGGGGGAGAAAATCTTGAAGCTTCAGCAGGGAAGGAGGATGATCAATTTGATTACAAGGAGTTAC CTACTTCGTAGATTAGTTTTTAGCATATGATAACACATACTGTATACAAGGAAAATGAAAAATTATAGTGTATTGCAATT TTCAAAGCTGTTGTTACTGTGTCTGTCAAACTACTAAGTTACCATATAGTTCTGTGCTAAGAAGAGTTTAATTTGTGATC TTGCACAGTAAATGATGCAGAACATAAGAGGTTATAAATAGTAATAGTCTGTTATATGATATATGGATATTTTTACTGTT CTATCCCCAAGTATTTACCTACTTGGGGAAAGTTGGCTTGGATTTTCCGTTTGGTTCTCACTGGTTTGGGTCCCTTTTGG GGAGTGTCACCTTTTATTAGATAGGGACAAGAGTTCATCTAGTGCTACTGTTTTGTAGTTTTCTTTCTGTCTGGGGCTTT AGCTCCTCATTGTAACAAAAAAAAAAAATACCTAATTTTTTTTAATATTTTAAAGTATTTTTACAATGCCAAATCTTATG AAATTGAATTCACTGCTCTTGATATTTTGTAAGAAATGTTCTAATGGATATTTGATATTGAGATTTATAATAAATACTAT TTAAAAAAAGAAAGGAATACGACTTCATGATACCAACAGGTGGAATAGAGTTAAATTTCAACACTTCTCACTCTAGCATG TAAGATTGTGTCTATTCCTTTATCATAATGCAGACAAGTTGATGAGATCATTTGGAAGGATTCTCAGGATGGCCAATACT CAACCAAGGCTGGGTATAACTTTCTGCTTCGTCTTCGTCAACATTCTCTATGCTGGCCTAATTATGGAAAAAAGTGTGGA GCCATGCCCCCGGTGCAAG
CDS sequence (LotjaGi5g1v0134000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGTACTCAAGTGTTGCAGATGACAAGTTGATAGAAAATAGCATTATCTCTTCCTCTTCTGAACAACCCAGAAAAGG TGGATTAAGAACCATGCCCTTCATCATAGTGAACGAGTGTCTGGAAAAGGTTTCAAGCTATGGGATTTTGCCCAACATGA TATTGTACTTGAGGGATGACTATCACATGCCCATTGCCAAAGCCACCAATGTTCTCTACACTTGGTCTGCTATGTCCAAC ATCTTGTCCATCTTTGGGGCTTTCCTCTCTGATTCTTACTTGGGTCGCTTCAGTGTCATCTTCATTGGTTCCTTCTCAAG CCTCCTTGGTGTAACTATTCTGTGGCTAACTGCCATGATCCCTGTGCTAAGACCTTCCTGTGAACTCTGCAACTCTGCTA CGGCAACCCAACTTCTACTTTTATTCCTTTCCTTTGGATTAATTTCAATTGGAGCTGGTTGCATTAGACCTTGTTCCATA GCTTTTGGAGCAGATCAACTTACTATTAAAGAAAATTCCAAAAATGAGAGGCTCTTGGATAGCTACTTCAATTGGTACTA TACCTCAATTGGAGCTTCAACCATTGTTGCATTGGGTGTAATCACATACATTCAAGAAAACCTGGGATGGAAATTTGGTT TCGGAGTACCTGCAGCACTAATGCTTATATCCGCTCTCAGTTTCACTCTTGGTTCCCCATTCTATGTCAAATTGAAGCCA AGTAAGAGCCTGCTCACTGGTTTTGTACAAGTAGCTGTTGCGGCCACAAAGAATAGAAAACTGAGTCTTCCTGTTGGCAA TTTTGAACTATATTATCAAGACCGTGATTCCGAGCCAATAGTCCCTACTGATAGCCTTAGCTGTTTGAACAAAGCTTGCA TAATAAGAAATCCTGAGACAGACTTAAACCCGGATGGATCAGTTTCAAACCCATGGAGCCTCTGCACTGTAAAACAGATG GAGTCACTGAAGTCGTTGCTGCGAGTCCTTCCTATGTGGTCCACAGGCATCTTTATGATGATGACTCAAAGTTCATTCTC CACTCTTCAAGCAAAGACCATGAACCGAAGGCTATTTGGCAATTTCGAGATACCTGCTGGATCCTTCACTGTTATCATGG TAATCACCTTATCAATAATCATTCCGTTATATGACCGCGTAGCAGTTCCCATACTAGCAAAATACACAGGCCAGCCTAGA GGGTTCAGTTCAAAAACTCGCATTGGGATTGGATTGCTGTTTGTAATTGTAGCAAAGGCAACATCAGCTGTAGTCGAAAC CATGAGACGAAATGTCGCCATCGAAGAAGGGTTCGAGTACCAACCTTATGCTGTGATCAACATGTCAGCTTTATGGCTAG TTCCGGAGTTTGTCTTGCTCGGAATAGCTGAGGCGTTCACGCCGGTTGGGCAGGTTGAGTTTTTCTACTCTCATTTCCCC AAGAGTATGTCTAGTTTCGCAATGGCTCTCTTCACTCTGGAGCTAGCTGCTGCTGATGTAGTGGGAAGTGTGGTGGTGAA TGTTGTGGACAAGGTCACTAGTTTAGGAGGGAACGGGAGCTGGCTATCAACTAATATCAATAGGGGCCATCTGAATTACT ATTATGTACTGCTATGTTTCTTAGGTATGGTTAACTTCCTCTACTATCTGGCTATTTGTTGGGCTTATGGGCCTGATGGG GGAGAAAATCTTGAAGCTTCAGCAGGGAAGGAGGATGATCAATTTGATTACAAGGAGTTACCTACTTCGTAG
Protein sequence (LotjaGi5g1v0134000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEYSSVADDKLIENSIISSSSEQPRKGGLRTMPFIIVNECLEKVSSYGILPNMILYLRDDYHMPIAKATNVLYTWSAMSN ILSIFGAFLSDSYLGRFSVIFIGSFSSLLGVTILWLTAMIPVLRPSCELCNSATATQLLLLFLSFGLISIGAGCIRPCSI AFGADQLTIKENSKNERLLDSYFNWYYTSIGASTIVALGVITYIQENLGWKFGFGVPAALMLISALSFTLGSPFYVKLKP SKSLLTGFVQVAVAATKNRKLSLPVGNFELYYQDRDSEPIVPTDSLSCLNKACIIRNPETDLNPDGSVSNPWSLCTVKQM ESLKSLLRVLPMWSTGIFMMMTQSSFSTLQAKTMNRRLFGNFEIPAGSFTVIMVITLSIIIPLYDRVAVPILAKYTGQPR GFSSKTRIGIGLLFVIVAKATSAVVETMRRNVAIEEGFEYQPYAVINMSALWLVPEFVLLGIAEAFTPVGQVEFFYSHFP KSMSSFAMALFTLELAAADVVGSVVVNVVDKVTSLGGNGSWLSTNINRGHLNYYYVLLCFLGMVNFLYYLAICWAYGPDG GENLEASAGKEDDQFDYKELPTS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 71 | 71 | - | – | |
| Gene3D | 8 | 560 | 553 | 1.9E-159 | – | |
| PANTHER | 21 | 560 | 540 | 2.5E-232 | ||
| PANTHER | 21 | 560 | 540 | 2.5E-232 | – | |
| SUPERFAMILY | 24 | 551 | 528 | 3.53E-17 | ||
| CDD | 32 | 556 | 525 | 3.13835E-178 | – | |
| TMHMM | 71 | 90 | 20 | - | – | |
| Phobius | 72 | 90 | 19 | - | – | |
| Phobius | 91 | 96 | 6 | - | – | |
| TMHMM | 97 | 119 | 23 | - | – | |
| Pfam | 97 | 518 | 422 | 3.6E-78 | ||
| Phobius | 97 | 118 | 22 | - | – | |
| Phobius | 119 | 137 | 19 | - | – | |
| Phobius | 138 | 164 | 27 | - | – | |
| TMHMM | 139 | 161 | 23 | - | – | |
| Phobius | 165 | 184 | 20 | - | – | |
| TMHMM | 182 | 204 | 23 | - | – | |
| Phobius | 185 | 204 | 20 | - | – | |
| Phobius | 205 | 215 | 11 | - | – | |
| TMHMM | 214 | 236 | 23 | - | – | |
| Phobius | 216 | 236 | 21 | - | – | |
| Phobius | 237 | 325 | 89 | - | – | |
| Phobius | 326 | 346 | 21 | - | – | |
| Phobius | 347 | 365 | 19 | - | – | |
| TMHMM | 359 | 381 | 23 | - | – | |
| Phobius | 366 | 385 | 20 | - | – | |
| Phobius | 386 | 405 | 20 | - | – | |
| Phobius | 406 | 425 | 20 | - | – | |
| TMHMM | 408 | 425 | 18 | - | – | |
| Phobius | 426 | 444 | 19 | - | – | |
| Phobius | 445 | 466 | 22 | - | – | |
| TMHMM | 445 | 467 | 23 | - | – | |
| Phobius | 467 | 485 | 19 | - | – | |
| Phobius | 486 | 509 | 24 | - | – | |
| TMHMM | 487 | 509 | 23 | - | – | |
| Phobius | 510 | 532 | 23 | - | – | |
| TMHMM | 530 | 552 | 23 | - | – | |
| Phobius | 533 | 557 | 25 | - | – | |
| Phobius | 558 | 583 | 26 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. | ||
| Molecular function | Transmembrane transporter activity | Enables the transfer of a substance, usually a specific substance or a group of related substances, from one side of a membrane to the other. | ||
| Biological process | Transmembrane transport | The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other. |
Expression pattern of LotjaGi5g1v0134000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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