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LotjaGi5g1v0140500.1

Overview

Field Value
Gene ID LotjaGi5g1v0140500
Transcript ID LotjaGi5g1v0140500.1
Related isoforms 2
Lotus japonicus genome version Gifu v1.2
Description Tyrosine--tRNA ligase; TAIR: AT2G33840.1 Tyrosyl-tRNA synthetase, class Ib, bacterial/mitochondrial; Swiss-Prot: sp|Q8S9J2|SYYC1_ARATH Tyrosine--tRNA ligase 1, cytoplasmic; TrEMBL-Plants: tr|A0A0L9UQE9|A0A0L9UQE9_PHAAN Uncharacterized protein; Found in the gene: LotjaGi5g1v0140500
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr5:34648978..34655412) extracted from Lotus japonicus Gifu genome v1.2.

GAATAATCTAAATGCATCCCTAAAGCCTCTTCCTTCACATTAGCCACTCTGATTGGTTCATTCATTCGCCGCACCAATCG AACCCTAATTTCTTCTTGGTTCTAAATTCTAGACGAAAGTTAGCCACTCTGATTCGTTCATTCATTCGCCGCACCAATGG AACCATCACCCGCTGTGGAAGCTCTCGAATCCGCCTCCGTCTCAGACCCTGACACTGACACCACCCAATCATCCAGTTCA ACGCCTCAGTGAGTTTTTCCTCTATTATACTTTCCACCCTGGACTCAGGTTTGAACTTCATCATTGTTCATTTTGGTTCC AGGTTGAGCCTCGAGCTGAGGTTTCAGATTGTGAGAAGCGTCGGGGAAGAGTGCATTCAAGAAGATGAGCTCCTTAATCT CCTTGCCAACAAGCCTGAGCCTGTTTGCTATGATGGCTTCGAACCCTCTGGACGAATGCACATTGCTCAGGTCAGCTTTT GTTTTCTCCCCACTAAATCTCAGTATTCAAAAATTAGGAATAAATTTATGGTCAAAGTGATTCGCCTTTTACCAAGGGAT GATTCATTTAGGAAGTACTCATTAAGAATGGTCTCGTGTTCGAGTATTGTATTGTGTTAGTAAAAAATATTGCAGGAGAG CTAGTTCCACCATAATGTGGATGTTCTCGACTAGTATAGGTTTTCTTAAATGGGGGGAGATTTGAAGAAGATTGAGATGG ATGATCTCATTTAACTGTAGATAGATGGGGGATAGTTGATTACTTGATATGTACGGTGACTGTAATTTTTTGAAGGTGTT TTGTGGCTTACATAGTTACATTCTTTTTACTTAATGTATATAGGGTGTCATGAAGACAATCAATGTGAATAAGCTAACAT CTGCGGGTTGCCGTGTCAAAATATGGATTGCTGATTGGTTTGCCAAGCTAAACAATAAAATGGGGGGAGATTTGAAGAAA ATTGAGATTGTCGGCCGCTATTTGATCGAAATTTGGAAAGCTGTTGGGATGGATCTGGAAGGGGGGAAGGTTGAGTTTTT GTGGTCGTCGAAAGAGATTAACGCTAGAGCTCATGAATACTGGCCTCTAGTGTTGGATATAGCTCAGAAGAACAACCTTA AAAGGATTATCAGGTTCCTCTTTATTAAAATGATTTTGTATGATCTATTAAATGGTGGATTTGGACTAAAAGGTGTTTTG CGTGTTTTTCTCTTCCAAATTTTAGGTGTAGCCAAATAATGGGGCGGGGTGAACATGAAGAATTGACTGCTGCACAGATA TTCTATCCATGCATGCAGTGTGCTGACATTTTTTTCCTCAAGGTGCGTTTCAGTAATCCATATATATTGATGCTTGCTTG TATCGATTATTTAACTCATGTATACATTGTTAGCTTCATAGCTTCACATTGGCTTAAAATCATGCTAAAATTATAGGATG GTGACCTTATAAGCTCAGATGGATGTTTCTGTTTACTGTAAAGAACTATTAGAAATCAAATGGATGCATCATTGCTACAA TGGTAGCAGTAAAATTGTCAATAGGAAATTATGATAGATGCTACCTCCCTGGATCGGTTAATTACATGCGCTGACTAAAT AATGTCTTCTCCAAATTTCAAATGTTCTGTTCTTGGATTTCTCCTTCCTAGTTTCCTATGTTCTCTCGTATTTATTATTA TTACTTTCTTGCATGCTTGAGTATTCAGATACTGTAATGTTTTGTTTCTTATTTCTTAACTCTGAAACTGTAGTTGTCAA TTTGCTTGAAATGTAATGCATGTGTGTTTTTATCTTAAAATAGGCTGACATTTGCCAATTAGGAATGGATCAGAGGAAAG TGAATGTACTTGCCAGAGAGTATTGTGATGACATTAAGAGGAGGAACAAGCCCATTATCTTATCACACCGTATTCTCCAA ATTTCCTTTCAACTGTTTTATATTGAAGTTGTGTATTGCTTACTAACCAATTCCAGGGTGATTTGTAGACATGTTACCTG GCCTACAACAAGGGCAAGACAAGATGTCAAAAAGTGACCCATCATCATCCGTTTTCATGGAAGATGAGGAGGTAAGTTGC CAACAATAGTACTATTAAGGGTTTGTTCGGTTTCAAAAAGTGACCCATCATCATCCGTTTGCATGGAAGATGATTGTTTT CCCCTACAAAATAAATACTTTTTTTCAAGAGTTCCTCTTTTTAATGTTTCTGTTTTCTTTCCAAAGAATTCTTTTGACTG ATCAATGTTTGTATATGGATATCATAGGCTGAGGTGAATGTGAAAATAAAAAAGGCTTATTGCCCGCCAAAAATTGTGGA AGGAAACCCATGCTTGGAGTACATTAAATATCTTATCTTCCCCTGGTTTAATGAGTTCACAGTGGAGCGTAATGCAGATA ATGGTGGGAATAAGTAAGTTTTGCTATTCCCCCAGTCTATTTTTTAACTGATCTTTTCTACTGTACAATTATTTGATTGT CGTGTTTTCATGCTTCCATTCAATCCAGGACATTTAAAAGCTCTGAAGAGCTGGTTGCTGCCTATGAAAGTGGAGAGTTA CATCCGGGTGACCTTAAACCAGCCTTGGCGAAGTCATTGAATAAAATTCTTGAGGTGATGTTTTATGGTCTCGCTTATGC ATCTTGATGGATTCTTCTTAAAAGCACAATTTCAACAATGTTGGAAGTGTTTCTTACTCTGCTCGGGAACAGTGTTTTAG AAGGGTTTTAGTACATCTATAGTTCTATACCAATAGAAACCTAGAATAGGATTCTAGTTCAGAGATTTTATTTAGTTGAA AGAGAGGTCAAAGAGTTTTGATAGATAACTATTAAGGAGAGTTAGTTAGTTAATTAGTTTGGTATAGTTAGAGGAAATAA GGCTTGTTGCCTACAACTAGGAAGAGGAGTTGAGAGGGAAAGTTGTCTAGCTATTTTGAGTGTATTGGGACTGGGACCTT TGGACATTAGGAGGTGACTGCGGACCCTCGAAGTTCTGCAACTTTCAAGTAATAAGAGTCCAGTTCCTATCAGCTTTTAC CCTAACAAAACAAAAGTCAGAGCCAATGCTTCTCAGAAAAAAATATTCTCTGCTTAGCTAAATGCCTACAAATTGCAATC TTCATAACTGCCTATGTCGCACACCGACAGATTAAATCCCCCTTATGTGTCAATCATCCCAGCTGCCAACTCAGGTAACT AAATCAATTAGTCATTCGAGAATAAACCTTTCATATAGTGGACCCTTTTTGTTGCTGATGCAGTACCCGAGCCTTTACCC TATTTATCTGTATTAGAACAGTGGGTTCTATCATTTACGGCAAGCAAATCATATATTACACATTTAATGTTGGTTTTAAA TTTTAATGTGGTGGCTAATATATTAGAACTTGTTTAATCCACTGGCTTCTCGAAGTAGAGCACAACTAGTATATCTACTT ATATGCATTACAAGTGCAATATAAAACCATTGATGTTAGCATATCATGAGTCATCTGTCCCAATTCATGACACCTCTAGT TAGATCTTTGTTGCCCCCTTTATTCTAACAAAAAAAGCATTCTCCACGCTTGAAGCCTAATGTGCTATTATGTGAGGGGG CATTTAGAAGTATAATATAAAATCATTCATGTTTCTTCACTCAACAACTGAAGCTCTTAAGATTGTTGGTTCATGATAAT ATGTATATACAATCTTTATTGGGTCAGAGTGGCTACTTACATTTGCTTCATTTATCAGTATAATATATTCATGTCTCAAT TAAATTGATTCAACCACGACAGCTGCTACCCTTATAGCTAGGTTGCTCTGAATATTATATTCTATTGAAGTTGATAGCAT CTTCTGATTATTTGATATACGTGCTACAATAGCAAGAGTTGGGGTGTTACAGTGTACATTTTTGTGTACTCAAGAATAAA GCTTTCTTTAATTTCTTTATTCTTGCTATGTGCCACAAGCTAAATCAATGATTGTATCTGCAGCCTGTAAGGGAACACTT CAGAAAGGACAACAATGCTAAAGAGCTGCTAAAAAGGGTCAAGGTGAGCCTCTTTAGAATAAGTAGAGCATATCAATTAT TTTGGCGTTGTGTGATACACTAAACAGAATTTGGCTTTGGTTTGCAGGCTTACAGAATCACCAAGTAATATGCAGAATAA GAGATTTCCAGCTCCAATTAAATTATTTGCCTAACAGCCGTACAATTTTCACATTACTAAGTGCATATTTAGATGATCTA TGAGAAATATGGTAAAGATTGGCATAGCATGTTAGTTTCAGATAGTGGTATGCATCTATGGGGTGTATTGAACCCAGAGA CATAGGAAGTTCTTTTTAGAGACTCATTTCACTTTTCTTATAAATGTTGGACTGTTATTATAATATTATTTCCTCAACGT TAAAACACACTTTTGGCATAAATTATCAGTTCTTACTGTTACAAACTTATGAGAAGTTACAAGTATAACATTTGATTTGG CCTACGAAGGACTATGTTAGCATGCCTCTGATTAAAAGGTCTACTAGGAAAGGTTAGAAGGCTGGGTTCTAGATAATACA ACCCAGTAACTGGCCCATTGGTAGTTAGTAGTTATTATGTTGAGAAGTTAGGATCATAAATTGTTCTGTGTACCATGGCT GTTTTTCCTTTTTTGCATAATGAGTCAGGGGAAAATAGTGTTTTTTTAATAAAACCATGGTTGGCAAATTAGAGTCAACT CGTAGACTCGGACTAGTTTACAACTTTTTTTTAGGGCAGATTAGTTTATAGTTACATTGCAAAATCAAGTTAACTACGAC ACAAAATTGTTTTTATCCTGACTCAGGCAGAATCAGGTAGACATGTATAGAAATTAGAATGTGAAGAGAAGAGAGGTCAA GAGTGATATGATAGGTGATGTGATAGGAAATGCAGACATAAATAAAAAGAAAAAAAAGTGAAAATAGTATGTAAGAGAAA GAAGAGTGTAAGCGAATCATTACTTCTTTGGACCCCTGACAATTTGAAAAAGAACTATGACTTGCTGCCATGCAGGTTCT GACTTCACCACCTCCACTACTAGACTGTCGTTTGTAGCATTTCCCGCCACCGGAATGAACATTCCTTTTGTGTCGACGGG CTGCCTTGCCCTCCACCATCTTCTTCTTACATCGTTCTCCTTCTTGTTGTCTCACAATGAGTGAGTATCTCTGTTTATAT TAGATTTGTTATGGTTTTCTCCTCTTCACATCCTTTTTGTTTTATCCTAGTTCATTTTATTGTATTTAGTTTAGGAATCC CAAATTTTGTGCTATTCAACTGCTGCTATTAGTTCTCCTCATTGCTGTCTCACAGTGGCTGACTACCTTTGTTTTATGTT ACTGAACTTTTCTTTAAATATTTGGTTGTGAAATCAGAATGTTGATTTCTTTTTGGTTAATGCATCTTTAATGGTGCAAG TAGATTATGTTTCTCCATCATGACAAGTTTTCTTTACTAATTTTTTTCATTTTTGACGAATACTATTATGAGTTTATGAG TCGACTGTATGAACTCACCGCTAGTTTACATAGAATTGCAAATTTGAACAACCTTGAGTAAAACTATCATTCTTTTTTCT ATTTTCTTGATCTGATTTCCGAGAACCTATCGTAGGAGCCTGCCCCACCGGGAAAGGGACAATAGGTTGGGGTATACAAA ACTCCCCCGACACCGATGAAGTATAACAATTGGTATCAAAGCTCCATTGTTAGGGTTGTAGAGTGCGTTGCTATATAGAG TTTACCAACTGAGATCTTGAGGCACAAATAGAGGAGCTACTAGTATAGATGGAAGAAGACCAACAAACATTGTTAATTGA CATTGCAAAGGAAACAACTGATAGAGCTTGTTCGGTACTAGAAGTGATTTAACATACCTGCAAGTGTTAGTGTCAAAAGA GACTCATGTTGTCACATACTTCATAATTGGCCGATGAGAAAGGCTTAGGCTACATAATTGCTTAAGTGTGTGTTTGGAAA ACCCATTCACGATCCACGTTTGACCCCGATTCACGTGTACAGAAGCAAGAAATAGTTGTTTTTGGATTTCTGGATCCACG TTTGGCCTCTCCAGATTTGAAACCAAACACACACTAAGTATGGATCCCGAACCAAGATGGATTTGATGCACCCCGAGTCA GCATTGCCAAATGGTTACCAACAATTATTAGAACATGAGCTTTCAGAACTTGTACGTTCCAACACCTGGTGCAAATCTAT AATTAATAAGTTAGTGAAGATGTGCATATTATTTTAAAAGACAAATAATACGCGAGGAAGTGAGTAACATTTTTTGAAAC AATTATTTCAAAGCTACAGCTGCTTAGACACAAAGAACGCATGAGATTGTGTTGAATTGAGGTTGAGAATTTGAAATTTG ACTTGCAAATATCATGTTTGGAAATTTAAAAATTA
Download Genomic Sequence

CDS sequence (LotjaGi5g1v0140500.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGAACCATCACCCGCTGTGGAAGCTCTCGAATCCGCCTCCGTCTCAGACCCTGACACTGACACCACCCAATCATCCAG TTCAACGCCTCAGTTGAGCCTCGAGCTGAGGTTTCAGATTGTGAGAAGCGTCGGGGAAGAGTGCATTCAAGAAGATGAGC TCCTTAATCTCCTTGCCAACAAGCCTGAGCCTGTTTGCTATGATGGCTTCGAACCCTCTGGACGAATGCACATTGCTCAG GGTGTCATGAAGACAATCAATGTGAATAAGCTAACATCTGCGGGTTGCCGTGTCAAAATATGGATTGCTGATTGGTTTGC CAAGCTAAACAATAAAATGGGGGGAGATTTGAAGAAAATTGAGATTGTCGGCCGCTATTTGATCGAAATTTGGAAAGCTG TTGGGATGGATCTGGAAGGGGGGAAGGTTGAGTTTTTGTGGTCGTCGAAAGAGATTAACGCTAGAGCTCATGAATACTGG CCTCTAGTGTTGGATATAGCTCAGAAGAACAACCTTAAAAGGATTATCAGGTGTAGCCAAATAATGGGGCGGGGTGAACA TGAAGAATTGACTGCTGCACAGATATTCTATCCATGCATGCAGTGTGCTGACATTTTTTTCCTCAAGGCTGACATTTGCC AATTAGGAATGGATCAGAGGAAAGTGAATGTACTTGCCAGAGAGTATTGTGATGACATTAAGAGGAGGAACAAGCCCATT ATCTTATCACACCACATGTTACCTGGCCTACAACAAGGGCAAGACAAGATGTCAAAAAGTGACCCATCATCATCCGTTTT CATGGAAGATGAGGAGGCTGAGGTGAATGTGAAAATAAAAAAGGCTTATTGCCCGCCAAAAATTGTGGAAGGAAACCCAT GCTTGGAGTACATTAAATATCTTATCTTCCCCTGGTTTAATGAGTTCACAGTGGAGCGTAATGCAGATAATGGTGGGAAT AAGACATTTAAAAGCTCTGAAGAGCTGGTTGCTGCCTATGAAAGTGGAGAGTTACATCCGGGTGACCTTAAACCAGCCTT GGCGAAGTCATTGAATAAAATTCTTGAGCCTGTAAGGGAACACTTCAGAAAGGACAACAATGCTAAAGAGCTGCTAAAAA GGGTCAAGGCTTACAGAATCACCAAGTAA
Download CDS Sequence

Protein sequence (LotjaGi5g1v0140500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MEPSPAVEALESASVSDPDTDTTQSSSSTPQLSLELRFQIVRSVGEECIQEDELLNLLANKPEPVCYDGFEPSGRMHIAQ GVMKTINVNKLTSAGCRVKIWIADWFAKLNNKMGGDLKKIEIVGRYLIEIWKAVGMDLEGGKVEFLWSSKEINARAHEYW PLVLDIAQKNNLKRIIRCSQIMGRGEHEELTAAQIFYPCMQCADIFFLKADICQLGMDQRKVNVLAREYCDDIKRRNKPI ILSHHMLPGLQQGQDKMSKSDPSSSVFMEDEEAEVNVKIKKAYCPPKIVEGNPCLEYIKYLIFPWFNEFTVERNADNGGN KTFKSSEELVAAYESGELHPGDLKPALAKSLNKILEPVREHFRKDNNAKELLKRVKAYRITK
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
MobiDBLite
mobidb-lite
1 30 30 - –
MobiDBLite
mobidb-lite
15 30 16 - –
PANTHER
PTHR46264:SF6
23 381 359 1.9E-227 –
PANTHER
PTHR46264
23 381 359 1.9E-227 –
Gene3D
G3DSA:3.40.50.620
25 192 168 4.2E-68
IPR014729
PIRSF
PIRSF006588
32 381 350 2.4E-142
IPR023617
SUPERFAMILY
SSF52374
35 367 333 9.14E-74 –
Pfam
PF00579
63 356 294 9.6E-64
IPR002305
Gene3D
G3DSA:3.40.50.620
193 380 188 2.2E-82
IPR014729

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0000166
Molecular function Nucleotide binding Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
Subterm of
GO:0004812
Molecular function Aminoacyl-tRNA ligase activity Catalysis of the formation of aminoacyl-tRNA from ATP, amino acid, and tRNA with the release of diphosphate and AMP.
Subterm of
GO:0004831
Molecular function Tyrosine-tRNA ligase activity Catalysis of the reaction: L-tyrosine + ATP + tRNA(Tyr) = L-tyrosyl-tRNA(Tyr) + AMP + diphosphate + 2 H(+).
Subterm of
GO:0005524
Molecular function ATP binding Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
Subterm of
GO:0006418
Biological process TRNA aminoacylation for protein translation The synthesis of aminoacyl tRNA by the formation of an ester bond between the 3'-hydroxyl group of the most 3' adenosine of the tRNA and the alpha carboxylic acid group of an amino acid, to be used in ribosome-mediated polypeptide synthesis.
Subterm of
Part of

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Expression data

Expression pattern

Expression pattern of LotjaGi5g1v0140500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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