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PF00579

Source: Pfam

Description

tRNA synthetases class I (W and Y)

Associated GO terms

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0000166
Molecular function Nucleotide binding Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
Subterm of
GO:0004812
Molecular function Aminoacyl-tRNA ligase activity Catalysis of the formation of aminoacyl-tRNA from ATP, amino acid, and tRNA with the release of diphosphate and AMP.
Subterm of
GO:0005524
Molecular function ATP binding Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
Subterm of
GO:0006418
Biological process TRNA aminoacylation for protein translation The synthesis of aminoacyl tRNA by the formation of an ester bond between the 3'-hydroxyl group of the most 3' adenosine of the tRNA and the alpha carboxylic acid group of an amino acid, to be used in ribosome-mediated polypeptide synthesis.
Subterm of
Part of

Associated Lotus transcripts 19

Transcript Name Description Predicted domains Domain count
Lj0g3v0166889.1
– PREDICTED: tryptophanyl-tRNA synthetase-like [Glycine max] gi|356518366|ref|XP_003527850.1|
Domains
22
Lj0g3v0203509.1
– PREDICTED: tyrosine--tRNA ligase-like [Cicer arietinum] gi|502129554|ref|XP_004500343.1|
Domains
24
Lj3g3v0461420.1
– PREDICTED: tyrosine--tRNA ligase-like [Cicer arietinum] gi|502129554|ref|XP_004500343.1|
Domains
19
Lj3g3v0461620.1
– PREDICTED: tyrosine--tRNA ligase-like [Cicer arietinum] gi|502129554|ref|XP_004500343.1|
Domains
24
Lj3g3v0592200.1
– PREDICTED: tryptophan--tRNA ligase, cytoplasmic-like [Cicer arietinum] gi|502173440|ref|XP_004515330.1|
Domains
12
Lj5g3v0614400.1
– PREDICTED: tyrosyl-tRNA synthetase-like [Glycine max] gi|356496773|ref|XP_003517240.1|
Domains
10
Lj5g3v0921280.1
– PREDICTED: tyrosyl-tRNA synthetase-like [Glycine max] gi|356496773|ref|XP_003517240.1|
Domains
8
Lj5g3v0921280.2
– PREDICTED: tyrosyl-tRNA synthetase-like [Glycine max] gi|356496773|ref|XP_003517240.1|
Domains
10
LotjaGi1g1v0409200.1
– Tryptophan-tRNA ligase; TAIR: AT2G25840.2 Nucleotidylyl transferase superfamily protein; Swiss-Prot: sp|Q8RXE9|SYWM_ARATH Tryptophan--tRNA ligase, chloroplastic/mitochondrial; TrEMBL-Plants: tr|A0A151RK76|A0A151RK76_CAJCA Tryptophanyl-tRNA synthetase; Found in the gene: LotjaGi1g1v0409200
Domains
22
LotjaGi3g1v0053200.1
– Tyrosine--tRNA ligase; TAIR: AT3G02660.1 Tyrosyl-tRNA synthetase, class Ib, bacterial/mitochondrial; Swiss-Prot: sp|Q9M876|SYYM_ARATH Tyrosine--tRNA ligase, chloroplastic/mitochondrial; TrEMBL-Plants: tr|A0A072UXA5|A0A072UXA5_MEDTR Tyrosine--tRNA ligase; Found in the gene: LotjaGi3g1v0053200
Domains
24
LotjaGi3g1v0068700.1
– Tryptophan-tRNA ligase; TAIR: AT3G04600.1 Nucleotidylyl transferase superfamily protein; Swiss-Prot: sp|Q9SR15|SYWC_ARATH Tryptophan--tRNA ligase, cytoplasmic; TrEMBL-Plants: tr|A0A151TGC9|A0A151TGC9_CAJCA Tryptophanyl-tRNA synthetase, cytoplasmic; Found in the gene: LotjaGi3g1v0068700
Domains
14
LotjaGi3g1v0068700.2
– Tryptophan-tRNA ligase; TAIR: AT3G04600.1 Nucleotidylyl transferase superfamily protein; Swiss-Prot: sp|Q9SR15|SYWC_ARATH Tryptophan--tRNA ligase, cytoplasmic; TrEMBL-Plants: tr|A0A1J7GMT2|A0A1J7GMT2_LUPAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0068700
Domains
14
LotjaGi3g1v0068700.3
– Tryptophan-tRNA ligase; TAIR: AT3G04600.1 Nucleotidylyl transferase superfamily protein; Swiss-Prot: sp|Q9SR15|SYWC_ARATH Tryptophan--tRNA ligase, cytoplasmic; TrEMBL-Plants: tr|A0A1J7GMT2|A0A1J7GMT2_LUPAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0068700
Domains
17
LotjaGi5g1v0068500.1
– Tyrosine--tRNA ligase; TAIR: AT2G33840.1 Tyrosyl-tRNA synthetase, class Ib, bacterial/mitochondrial; Swiss-Prot: sp|Q8S9J2|SYYC1_ARATH Tyrosine--tRNA ligase 1, cytoplasmic; TrEMBL-Plants: tr|A0A0L9UQE9|A0A0L9UQE9_PHAAN Uncharacterized protein; Found in the gene: LotjaGi5g1v0068500
Domains
9
LotjaGi5g1v0140500.1
– Tyrosine--tRNA ligase; TAIR: AT2G33840.1 Tyrosyl-tRNA synthetase, class Ib, bacterial/mitochondrial; Swiss-Prot: sp|Q8S9J2|SYYC1_ARATH Tyrosine--tRNA ligase 1, cytoplasmic; TrEMBL-Plants: tr|A0A0L9UQE9|A0A0L9UQE9_PHAAN Uncharacterized protein; Found in the gene: LotjaGi5g1v0140500
Domains
10
LotjaGi5g1v0140500.2
– Tyrosine--tRNA ligase; TAIR: AT2G33840.1 Tyrosyl-tRNA synthetase, class Ib, bacterial/mitochondrial; Swiss-Prot: sp|Q8S9J2|SYYC1_ARATH Tyrosine--tRNA ligase 1, cytoplasmic; TrEMBL-Plants: tr|A0A0L9UQE9|A0A0L9UQE9_PHAAN Uncharacterized protein; Found in the gene: LotjaGi5g1v0140500
Domains
10
LotjaGi5g1v0140500.3
– Tyrosine--tRNA ligase; TAIR: AT2G33840.1 Tyrosyl-tRNA synthetase, class Ib, bacterial/mitochondrial; Swiss-Prot: sp|Q8S9J2|SYYC1_ARATH Tyrosine--tRNA ligase 1, cytoplasmic; TrEMBL-Plants: tr|A0A0L9UQE9|A0A0L9UQE9_PHAAN Uncharacterized protein; Found in the gene: LotjaGi5g1v0140500
Domains
10
LotjaGi6g1v0104800.1
– Tyrosine--tRNA ligase; TAIR: AT3G02660.1 Tyrosyl-tRNA synthetase, class Ib, bacterial/mitochondrial; Swiss-Prot: sp|Q9M876|SYYM_ARATH Tyrosine--tRNA ligase, chloroplastic/mitochondrial; TrEMBL-Plants: tr|A0A072UXA5|A0A072UXA5_MEDTR Tyrosine--tRNA ligase; Found in the gene: LotjaGi6g1v0104800
Domains
24
LotjaGi6g1v0104800.2
– Tyrosine--tRNA ligase; TAIR: AT3G02660.1 Tyrosyl-tRNA synthetase, class Ib, bacterial/mitochondrial; Swiss-Prot: sp|Q9M876|SYYM_ARATH Tyrosine--tRNA ligase, chloroplastic/mitochondrial; TrEMBL-Plants: tr|A0A072V2K0|A0A072V2K0_MEDTR Tyrosine--tRNA ligase; Found in the gene: LotjaGi6g1v0104800
Domains
23

Co-occuring domains 1

A list of co-occurring predicted domains within the L. japonicus gene space:

Predicted domain Source Observations Saturation (%)
cd00805 CDD 1 5.26