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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0140500 |
| Transcript ID | LotjaGi5g1v0140500.2 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Tyrosine--tRNA ligase; TAIR: AT2G33840.1 Tyrosyl-tRNA synthetase, class Ib, bacterial/mitochondrial; Swiss-Prot: sp|Q8S9J2|SYYC1_ARATH Tyrosine--tRNA ligase 1, cytoplasmic; TrEMBL-Plants: tr|A0A0L9UQE9|A0A0L9UQE9_PHAAN Uncharacterized protein; Found in the gene: LotjaGi5g1v0140500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:34652564..34655256) extracted from Lotus japonicus Gifu genome v1.2.
ATGGAACCATCACCCGCTGTGGAAGCTCTCGAATCCGCCTCCGTCTCAGACCCTGACACTGACACCACCCAATCATCCAG TTCAACGCCTCAGTGAGTTTTTCCTCTATTATACTTTCCACCCTGGACTCAGGTTTGAACTTCATCATTGTTCATTTTGG TTCCAGGTTGAGCCTCGAGCTGAGGTTTCAGATTGTGAGAAGCGTCGGGGAAGAGTGCATTCAAGAAGATGAGCTCCTTA ATCTCCTTGCCAACAAGCCTGAGCCTGTTTGCTATGATGGCTTCGAACCCTCTGGACGAATGCACATTGCTCAGGTCAGC TTTTGTTTTCTCCCCACTAAATCTCAGTATTCAAAAATTAGGAATAAATTTATGGTCAAAGTGATTCGCCTTTTACCAAG GGATGATTCATTTAGGAAGTACTCATTAAGAATGGTCTCGTGTTCGAGTATTGTATTGTGTTAGTAAAAAATATTGCAGG AGAGCTAGTTCCACCATAATGTGGATGTTCTCGACTAGTATAGGTTTTCTTAAATGGGGGGAGATTTGAAGAAGATTGAG ATGGATGATCTCATTTAACTGTAGATAGATGGGGGATAGTTGATTACTTGATATGTACGGTGACTGTAATTTTTTGAAGG TGTTTTGTGGCTTACATAGTTACATTCTTTTTACTTAATGTATATAGGGTGTCATGAAGACAATCAATGTGAATAAGCTA ACATCTGCGGGTTGCCGTGTCAAAATATGGATTGCTGATTGGTTTGCCAAGCTAAACAATAAAATGGGGGGAGATTTGAA GAAAATTGAGATTGTCGGCCGCTATTTGATCGAAATTTGGAAAGCTGTTGGGATGGATCTGGAAGGGGGGAAGGTTGAGT TTTTGTGGTCGTCGAAAGAGATTAACGCTAGAGCTCATGAATACTGGCCTCTAGTGTTGGATATAGCTCAGAAGAACAAC CTTAAAAGGATTATCAGGTTCCTCTTTATTAAAATGATTTTGTATGATCTATTAAATGGTGGATTTGGACTAAAAGGTGT TTTGCGTGTTTTTCTCTTCCAAATTTTAGGTGTAGCCAAATAATGGGGCGGGGTGAACATGAAGAATTGACTGCTGCACA GATATTCTATCCATGCATGCAGTGTGCTGACATTTTTTTCCTCAAGGTGCGTTTCAGTAATCCATATATATTGATGCTTG CTTGTATCGATTATTTAACTCATGTATACATTGTTAGCTTCATAGCTTCACATTGGCTTAAAATCATGCTAAAATTATAG GATGGTGACCTTATAAGCTCAGATGGATGTTTCTGTTTACTGTAAAGAACTATTAGAAATCAAATGGATGCATCATTGCT ACAATGGTAGCAGTAAAATTGTCAATAGGAAATTATGATAGATGCTACCTCCCTGGATCGGTTAATTACATGCGCTGACT AAATAATGTCTTCTCCAAATTTCAAATGTTCTGTTCTTGGATTTCTCCTTCCTAGTTTCCTATGTTCTCTCGTATTTATT ATTATTACTTTCTTGCATGCTTGAGTATTCAGATACTGTAATGTTTTGTTTCTTATTTCTTAACTCTGAAACTGTAGTTG TCAATTTGCTTGAAATGTAATGCATGTGTGTTTTTATCTTAAAATAGGCTGACATTTGCCAATTAGGAATGGATCAGAGG AAAGTGAATGTACTTGCCAGAGAGTATTGTGATGACATTAAGAGGAGGAACAAGCCCATTATCTTATCACACCGTATTCT CCAAATTTCCTTTCAACTGTTTTATATTGAAGTTGTGTATTGCTTACTAACCAATTCCAGGGTGATTTGTAGACATGTTA CCTGGCCTACAACAAGGGCAAGACAAGATGTCAAAAAGTGACCCATCATCATCCGTTTTCATGGAAGATGAGGAGGTAAG TTGCCAACAATAGTACTATTAAGGGTTTGTTCGGTTTCAAAAAGTGACCCATCATCATCCGTTTGCATGGAAGATGATTG TTTTCCCCTACAAAATAAATACTTTTTTTCAAGAGTTCCTCTTTTTAATGTTTCTGTTTTCTTTCCAAAGAATTCTTTTG ACTGATCAATGTTTGTATATGGATATCATAGGCTGAGGTGAATGTGAAAATAAAAAAGGCTTATTGCCCGCCAAAAATTG TGGAAGGAAACCCATGCTTGGAGTACATTAAATATCTTATCTTCCCCTGGTTTAATGAGTTCACAGTGGAGCGTAATGCA GATAATGGTGGGAATAAGTAAGTTTTGCTATTCCCCCAGTCTATTTTTTAACTGATCTTTTCTACTGTACAATTATTTGA TTGTCGTGTTTTCATGCTTCCATTCAATCCAGGACATTTAAAAGCTCTGAAGAGCTGGTTGCTGCCTATGAAAGTGGAGA GTTACATCCGGGTGACCTTAAACCAGCCTTGGCGAAGTCATTGAATAAAATTCTTGAGGTGATGTTTTATGGTCTCGCTT ATGCATCTTGATGGATTCTTCTTAAAAGCACAATTTCAACAATGTTGGAAGTGTTTCTTACTCTGCTCGGGAACAGTGTT TTAGAAGGGTTTTAGTACATCTATAGTTCTATACCAATAGAAACCTAGAATAGGATTCTAGTTCAGAGATTTTATTTAGT TGAAAGAGAGGTCAAAGAGTTTTGATAGATAACTATTAAGGAGAGTTAGTTAG
CDS sequence (LotjaGi5g1v0140500.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAACCATCACCCGCTGTGGAAGCTCTCGAATCCGCCTCCGTCTCAGACCCTGACACTGACACCACCCAATCATCCAG TTCAACGCCTCAGTTGAGCCTCGAGCTGAGGTTTCAGATTGTGAGAAGCGTCGGGGAAGAGTGCATTCAAGAAGATGAGC TCCTTAATCTCCTTGCCAACAAGCCTGAGCCTGTTTGCTATGATGGCTTCGAACCCTCTGGACGAATGCACATTGCTCAG GGTGTCATGAAGACAATCAATGTGAATAAGCTAACATCTGCGGGTTGCCGTGTCAAAATATGGATTGCTGATTGGTTTGC CAAGCTAAACAATAAAATGGGGGGAGATTTGAAGAAAATTGAGATTGTCGGCCGCTATTTGATCGAAATTTGGAAAGCTG TTGGGATGGATCTGGAAGGGGGGAAGGTTGAGTTTTTGTGGTCGTCGAAAGAGATTAACGCTAGAGCTCATGAATACTGG CCTCTAGTGTTGGATATAGCTCAGAAGAACAACCTTAAAAGGATTATCAGGTGTAGCCAAATAATGGGGCGGGGTGAACA TGAAGAATTGACTGCTGCACAGATATTCTATCCATGCATGCAGTGTGCTGACATTTTTTTCCTCAAGGCTGACATTTGCC AATTAGGAATGGATCAGAGGAAAGTGAATGTACTTGCCAGAGAGTATTGTGATGACATTAAGAGGAGGAACAAGCCCATT ATCTTATCACACCACATGTTACCTGGCCTACAACAAGGGCAAGACAAGATGTCAAAAAGTGACCCATCATCATCCGTTTT CATGGAAGATGAGGAGGCTGAGGTGAATGTGAAAATAAAAAAGGCTTATTGCCCGCCAAAAATTGTGGAAGGAAACCCAT GCTTGGAGTACATTAAATATCTTATCTTCCCCTGGTTTAATGAGTTCACAGTGGAGCGTAATGCAGATAATGGTGGGAAT AAGACATTTAAAAGCTCTGAAGAGCTGGTTGCTGCCTATGAAAGTGGAGAGTTACATCCGGGTGACCTTAAACCAGCCTT GGCGAAGTCATTGAATAAAATTCTTGAGCTAGTTCAGAGATTTTATTTAGTTGAAAGAGAGGTCAAAGAGTTTTGA
Protein sequence (LotjaGi5g1v0140500.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEPSPAVEALESASVSDPDTDTTQSSSSTPQLSLELRFQIVRSVGEECIQEDELLNLLANKPEPVCYDGFEPSGRMHIAQ GVMKTINVNKLTSAGCRVKIWIADWFAKLNNKMGGDLKKIEIVGRYLIEIWKAVGMDLEGGKVEFLWSSKEINARAHEYW PLVLDIAQKNNLKRIIRCSQIMGRGEHEELTAAQIFYPCMQCADIFFLKADICQLGMDQRKVNVLAREYCDDIKRRNKPI ILSHHMLPGLQQGQDKMSKSDPSSSVFMEDEEAEVNVKIKKAYCPPKIVEGNPCLEYIKYLIFPWFNEFTVERNADNGGN KTFKSSEELVAAYESGELHPGDLKPALAKSLNKILELVQRFYLVEREVKEF
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 30 | 30 | - | – | |
| MobiDBLite | 15 | 30 | 16 | - | – | |
| PANTHER | 23 | 359 | 337 | 1.5E-216 | – | |
| PANTHER | 23 | 359 | 337 | 1.5E-216 | – | |
| Gene3D | 25 | 192 | 168 | 4.0E-68 | ||
| PIRSF | 32 | 371 | 340 | 1.5E-135 | ||
| SUPERFAMILY | 35 | 360 | 326 | 7.74E-71 | – | |
| Pfam | 63 | 356 | 294 | 8.7E-64 | ||
| Gene3D | 193 | 371 | 179 | 5.0E-73 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleotide binding | Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. | ||
| Molecular function | Aminoacyl-tRNA ligase activity | Catalysis of the formation of aminoacyl-tRNA from ATP, amino acid, and tRNA with the release of diphosphate and AMP. | ||
| Molecular function | Tyrosine-tRNA ligase activity | Catalysis of the reaction: L-tyrosine + ATP + tRNA(Tyr) = L-tyrosyl-tRNA(Tyr) + AMP + diphosphate + 2 H(+). | ||
| Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. | ||
| Biological process | TRNA aminoacylation for protein translation | The synthesis of aminoacyl tRNA by the formation of an ester bond between the 3'-hydroxyl group of the most 3' adenosine of the tRNA and the alpha carboxylic acid group of an amino acid, to be used in ribosome-mediated polypeptide synthesis. |
Expression pattern of LotjaGi5g1v0140500.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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