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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0141700 |
| Transcript ID | LotjaGi5g1v0141700.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Squamosa promoter-binding-like protein; TAIR: AT2G42200.1 squamosa promoter binding protein-like 9; Swiss-Prot: sp|Q700W2|SPL9_ARATH Squamosa promoter-binding-like protein 9; TrEMBL-Plants: tr|I1N969|I1N969_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0141700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:35154751..35160458) extracted from Lotus japonicus Gifu genome v1.2.
TCTTCAGACATCACTACCACTTGTACCAATCTCACTAAAGCAATGTCAGGTGGGCCCTTACTTTTCACTTCTCTTATTTT TTAATTATTAATTCATCTCCCACTACCACTTCCAACCCTCTACTCTTTTTCACCACTCAATGTAAAATGAGCAGGCTCTA GTTCGCTTCACTAGTGTTAATTAGAAGCTAGAGCCACCACCATCTCCAGTTACAATGAGTTCTGGCGCCTCTGCCACCAA ACCACAACCACCACCACCTCCATCACCACCACCAGCCACTGAGTCTTCCCTTGATGGCTTGCAATTTGGGCAAAAAATAT ACTTTGAGGATGCTGCGGAGGGTCTTGCTGCAGCTCAGGCTAAACCGAAGAAGGGAAGGGGTGGTGGTGCTGCGGCGGCT CAGCCACTTCGGTGCCAGGTTGAGGGTTGCAATGCAGATCTGCGTGATGCGAAGGCTTACTATTCCAGGCACAAGGTGTG TGACATGCACTCAAAATCCCCTTCTGTCATTGTCGCTGGTTTGGACCAAAGGTTTTGCCAACAATGTAGCAGGTCAGCTG TTTGATGTTTGACTGCACTACTTTTATTTATTTATTTATGACTTCTTTTGGTTTCACTTTCTTGATTCTTGTTGCCATTT TTAGTTTTTTTTGGCTATAATGGGTATGTTCTAGATTTCTACTTTACTTCCCTCTTCAAACTCTTGCCTTCACTCACATT GGCTTTTGTTTCTATATTTTTATTTCCATTTATAGTTTTTTGGCACTTTTGTTTTACTTTTAGTTCTAATGTTTTTTTTT TTTACATAGGAAGACATATTTCGAATGTTTTTAATGGTTTTTTTGTTGTTGTTTATATATTATTATTTTTTCAAATGCAA AGGATTTCTTTTTGAGAATTAAAATATTATTCATAGATGAATGAAAATACAAAACCCCTTTCATAAGAAAAGTTAATGCC TAAAAACCCACAAACCCATTGTTAGAGAGGATTAATCTCCCAATCAAAATCTAAATACTCTACATTTTACAAGAGAACAA AACCCAGAAAAAAAAGGGCCCAAATTACCGTCCATGAACCTCTAAGAACAGCAGGAAAAAAAACTCTAAGGACAGCAGAA AAACCAACAAATCCACATCACAAACAGATGGCAAATTACTGAGGCCGGAAGGCAACTGTAGCCTCAATAACCCATCTTGT GAAGTAAACAACCAACACCTAGAAACAACACCTTCAATACCAACAACCCAGAATATATTAATATTTAAATTTATATATAT ATATATATATTATTTGTTTAAAGATATAATTGCTTGTTCATGCGCTTTAGTTAGGGTGCGTGTGAAAGGAAGCTTAATGA GGGGTGTGTAAATTTTGTTTTTATTCTGTTATGTAATTTTAACTTTATGGTAGATAGTGGGAGACCGGTTCATATTTCTG GATTTAATTCAGCTTGATGGTATGAGTCTCAAATGTCGACACACCATGATAGTAGTGCTTTTATGCGATTGTGTTGTTTG TGTTGTGATTATGGATAGTGACAGGTGAGGTATTATGCTTTAGGAGACAATGGTACTTATAAGACATTTTGTGCACAAGT CCACCTGTCATCTGCTGAAATTCCACTCTTTATTGGAATAATGAGGGCAGCAAGGATTGAACTCTAGACGGCTTCTTAAT AGAGACTCTAATAGCATGTCAAATAATCAATTATCTTTAGTTGTTGGGTAAAAGATTCATGAACTAAGTTGCATACCATA TGAAACTATGTAGAATGGACTGAAAAATGTGAAACTTCATAATCTCTGTTTAGATATACCTCACCTCCTGAGCTGTCAAT ATCTATATTGAATTGGGATGATAACACTATAATTTAGTTTTTTTTTATATGAATTGTAAAGCGAAGTTGTGTTGTTCTGT TGGTTGTGTAATTGCACCCATCCAGTGCTAGTTCATTCTTTGAGTAAAGTGCTTTTCCCATGTGCTAATGTACAAATCAT GTAAACTTTTAATCACTCCAACATCTCTTTCCTCACAACCAATTGTAAAACCTAGAAGCTACTCATAGAAGCTTCTCTCC AAAATCAATTCTGGCTCCAGAATCAAGTTTAGAAAGATTTCCCAACATGCTCTAAGCTTTGTTAGGTTTCACTGCCTATC TTTGACTTGTTTCTCATTGGGAATGATTAAAGTTGATGTTGCTGGATATTGCAATTATCAATTAGGCATTATGAAATATG GAAATGTTACTGCGCATTCAAGGAGTGTGTTCAATGCCAAATATTACTAACAAATGTGTAGAACTGGGGGTGTATAGTCA TCATAATTAGGGACTATAAAACCGTGTTCGATTTTTATGGCAGCATTTTTCATCAATAGAAGTGAGGTGGAACAAAGAAG CCATTTGGAACTGTTTGGTGGTGCATAAATGTTGCAGATTGATCTTTATAGGTGACCAATTATCATTTTCCAGATTGAGG TATATTAGGAAGGGTTCTTTTTGTGCAAAACTTGATGCACCCTTTGATGGAATTGCCAAACTTTTAAACTAACAAACTTG TGCTATATCCCAACCTATTGACTGTCGATCTTATCTCATATGTATAATACATTTTGAGTAATATCGGATTCATATTGCCG ATCATTTTGAAAAGAATTTTTCATCATCATATTTGAAGACACCCTTCACCATCAAATTTTGCAAAATGTTCTCTGGGGAA GGGGATGGCAGGTAGGTAAGGGGTAAAGTTAGGTCCTGTTGGATGATAATGTCTTAGGCCTCTAATTAAGGAACTATATC ATAGGAGGAGTAGGATGGGGCTCAATTCTAGGACTGACTCAATAGATAGTTGGAAGTTAAGGAAGTTAGTTAGTGGAGTT AGCGGTTAGCAGGTTCAGTTGGGAATAAAGGTGAATGGACCGAACAGTAGCATGGTGTCTGGTGACATGATTTGTCCTTA ACCAATGCATGAGTATTACTGTACAATGTGGGAATTACATCTAATGGAAATATACTTGTTAGAATATGAAAAGGTAAGAT ATAATAATATCTTGGAGTAATTTAAGATAATTTAGCTTATTTTCTAGGATTTGTTTCTTTATTTTAATAGTTATATTGAT CTTTTTTCTTAATTAATTTTGATTTAGAGTCTTAGTTATTTTCCATATTGTCTAGAATTAGAAGTCTACCATTACTATTA ATAAAGTTAATTATTTTGTCTTTTATAGGGTTCAATGTGTTTCTTTTTTTCACTCTTTATACTCTCCCTATAATTTAATC ATGGTATCGGAACAATGCCATACTGCCATCTTCCTTGACCTATCCCATTACTATTCCGCTCATGGTATCGGAACAATGCC ATACTGCCCATCTGATTTTGTAATGTGAAGCTCTCTTTGAGGTTTCATTCCCCCACTTTCTGCAATCATCAGGCAATGAA GGTGTGCCCTTGTCCATCATCCATCTCAGAAGCCATCAATTTTCTGACCCCCTATTACTGCCACCAAATCCAATGTCACA TGACATACCTACACATGCAACTTCTGGTCCAAGCTTCCATAGGGGCATGAGGTGCATGTGCCACTATTGGCCTTAAATGA TATCATTGCTTCTTTTGATCTTTTCTGGTTGTCATCATCTCCTCGTGGTTCTATTTTGGTCTTTTTATTTGTGGTTGTTG TTAGATTGTTGTTTCAGTGTTGTTTGTTATGGAGCATATTTTTATTGTATTTTACCATAGATCTCTGAATCCAAAGAATT AGTTTGACATTGCAATAAATCCTCTCATTTGCTTGTGAAGTTAACGTGAAAGGATAAAGACTTCAAGTTCATCCAATTCT TTGGTAACGAGAGCATTGCATTTGATTTGTACGAAGCAATTATGTCATGTTAGAATTTCTCAATATAGTGTCTCTTCATG TTTCTCTTTATTACCACTCCTTTACATGATTTTGGTAGCACTTTTGTTTCAGAAAACTAATATCCTCTTTGGTAGCCCAT GCACAGATTTCATCAGCTTCCTGAATTTGATCAAGGAAAACGAAGTTGCCGCAGGAGACTCGCTAACCATAACGAGCGTA GGAGGAAGCCACCAACAGGCTCCTTGTTAACTTCACGTTATGCCAGACTTTCTTCACCTATTTTCGGTCAGAAATTATTG TTGAAACACCAATTTTAAGTCTCAATGTTTAATTTCAGCTTGTGCTGTGCCTAGCCGGTAGACAATAAAATGGTTTAATT GGCTCTTGTTTGTCAACAGGTAACAATGGCAGAGGTGGTGGCTTTGTGAAGGACTTTGCTCCACATCCAAAGCTTACTCT GGGAAATGCATTACCATGTGAGCCAGTTCCTGGCATTCAAACCATAACACTTCCCTGGCAAGCCAACTCACAGGCACCCT CTGATTTTTTCCTGCAAGACTCAGTGGGTGGGACAAGTTTCCTTGGTCCAAGACACCTTCCAGTGGAAGGTTACAGTACT CAAGTCACAGATTCAAGCTGTGCTCTCTCTCTTCTGTCAAATCAAACATGGGGTTCCAAAAACACTACACCTAGTGTTGA GCTAAACAACTTGCTGAATTTCAATGGGACACTCATGACACAACTTGCTACTGCATCTTCTCATCAAGTTGCAGGCATCC ATCATCTTCCAAACTCGTCGTGGTACTTCAAGGGTGTTGATTCGGGTAATTGCTCACCGAACGAGTTTGTCCCTGATCTT GGTCTTGGTCCTGGGGAGCTTGATGTGGGGAAGTCCGGAGCCTGTGATTCTCCTCACTGGTCACTTTAAAACTGTTCTTT GTTGCAATGTATGCAGCAATATCATGTAGCGCGAAAAATGAGTTGAATTTGATCTATTACCAGAGTGTTACTAGTGCTTT TTCTGGTTTCTTAAATTGCAAGCAAGGCAGGTATCCCTTCCTTCGGTTGTGGAACTTGCAGACATTCATAGTTTGGTTTG TTTGAACTTATTATAAGCCAGGTAGCTGGCTAGCTGTGTTTGTTTTGTGGAACTATTTTGGTCCATTTGAACGTAGAAGC AAGGTGGTTAAACCTTGTTTCATTTTGTTACTCTTGCAGACATGAACGATCTAAGGGTGGGTATGTGAATTATTGATGCT TTTTTAGTATGTATTAGTCTGGTTTCCACTGAATCTGTACCCTATATATCTTGGCTATTGCTGTGTGATTTTAGAATTAC TGATGAATCTGCTAGCTGGTTCCCCTAACCCAGCCAGTCTTACAATCATGGTGTATTTGGTTAAGCAGAGGGGACTGTTG TGGCGTGAGGGAGTGTCCTCTCAGTCTTCACTGTTACAGCGGAGTGTTATAGCAGAGAGGGGCATGCATGAATCTTTTTA TAACTGTTAAAACGTTGTGTTTTCGACTAACTTTTGTTTGCAGATTCTTATTGTGTAGGTTGAGATTTGGAAAAGAGTGG ACGGTTAAGCAGTTGGTGTTCAGGAATAATCTAGAGCCACAGGGGAAGCTTGAAGACCATGAATTAAGTTTGATTGTCAG CATCCACGTGTCCATCTTAGAAAACTTTAGCTTGCCTATATATACGTTGTTTTTCAAATGTAAAAAGGGGGTAGCATTTA ATTATTCAGAAATAACATACGTGCTTCATATGTCCAAGTAACCGAGACTAGAAAAAGTAGTGTTGGCTGAGTATGAATTT GCTTAAACCTTGTATTATCGTGTTGCAA
CDS sequence (LotjaGi5g1v0141700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGTTCTGGCGCCTCTGCCACCAAACCACAACCACCACCACCTCCATCACCACCACCAGCCACTGAGTCTTCCCTTGA TGGCTTGCAATTTGGGCAAAAAATATACTTTGAGGATGCTGCGGAGGGTCTTGCTGCAGCTCAGGCTAAACCGAAGAAGG GAAGGGGTGGTGGTGCTGCGGCGGCTCAGCCACTTCGGTGCCAGGTTGAGGGTTGCAATGCAGATCTGCGTGATGCGAAG GCTTACTATTCCAGGCACAAGGTGTGTGACATGCACTCAAAATCCCCTTCTGTCATTGTCGCTGGTTTGGACCAAAGGTT TTGCCAACAATGTAGCAGATTTCATCAGCTTCCTGAATTTGATCAAGGAAAACGAAGTTGCCGCAGGAGACTCGCTAACC ATAACGAGCGTAGGAGGAAGCCACCAACAGGCTCCTTGTTAACTTCACGTTATGCCAGACTTTCTTCACCTATTTTCGGT AACAATGGCAGAGGTGGTGGCTTTGTGAAGGACTTTGCTCCACATCCAAAGCTTACTCTGGGAAATGCATTACCATGTGA GCCAGTTCCTGGCATTCAAACCATAACACTTCCCTGGCAAGCCAACTCACAGGCACCCTCTGATTTTTTCCTGCAAGACT CAGTGGGTGGGACAAGTTTCCTTGGTCCAAGACACCTTCCAGTGGAAGGTTACAGTACTCAAGTCACAGATTCAAGCTGT GCTCTCTCTCTTCTGTCAAATCAAACATGGGGTTCCAAAAACACTACACCTAGTGTTGAGCTAAACAACTTGCTGAATTT CAATGGGACACTCATGACACAACTTGCTACTGCATCTTCTCATCAAGTTGCAGGCATCCATCATCTTCCAAACTCGTCGT GGTACTTCAAGGGTGTTGATTCGGGTAATTGCTCACCGAACGAGTTTGTCCCTGATCTTGGTCTTGGTCCTGGGGAGCTT GATGTGGGGAAGTCCGGAGCCTGTGATTCTCCTCACTGGTCACTTTAA
Protein sequence (LotjaGi5g1v0141700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSSGASATKPQPPPPPSPPPATESSLDGLQFGQKIYFEDAAEGLAAAQAKPKKGRGGGAAAAQPLRCQVEGCNADLRDAK AYYSRHKVCDMHSKSPSVIVAGLDQRFCQQCSRFHQLPEFDQGKRSCRRRLANHNERRRKPPTGSLLTSRYARLSSPIFG NNGRGGGFVKDFAPHPKLTLGNALPCEPVPGIQTITLPWQANSQAPSDFFLQDSVGGTSFLGPRHLPVEGYSTQVTDSSC ALSLLSNQTWGSKNTTPSVELNNLLNFNGTLMTQLATASSHQVAGIHHLPNSSWYFKGVDSGNCSPNEFVPDLGLGPGEL DVGKSGACDSPHWSL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 28 | 28 | - | – | |
| MobiDBLite | 8 | 22 | 15 | - | – | |
| PANTHER | 26 | 316 | 291 | 6.4E-110 | – | |
| PANTHER | 26 | 316 | 291 | 6.4E-110 | – | |
| Gene3D | 57 | 128 | 72 | 4.8E-35 | ||
| ProSiteProfiles | 64 | 141 | 78 | 31.966 | ||
| SUPERFAMILY | 65 | 145 | 81 | 3.27E-40 | ||
| Pfam | 67 | 140 | 74 | 1.9E-32 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Cellular component | Nucleus | A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. |
Expression pattern of LotjaGi5g1v0141700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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