Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0142300 |
| Transcript ID | LotjaGi5g1v0142300.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | G-patch domain containing protein, expressed; TAIR: AT3G57910.1 D111/G-patch domain-containing protein; Swiss-Prot: sp|Q6DGZ0|GPT11_DANRE G patch domain-containing protein 11; TrEMBL-Plants: tr|I1JG45|I1JG45_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0142300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:35361830..35364604) extracted from Lotus japonicus Gifu genome v1.2.
GTGTGTCTTTCCAAGCCCATAGTGGCAATGCCATTGCTCACCATGGCTGAATCAGCGACGAACGGGCAGAGCAACGACGG AGCACAGGGAAACGAAGAACAAGATGATGACTACATGGCTGATCTCTCTCTCTTTCTTCCTTCCGAAGCTCTTCACCCTC CGAAATCTTCATCCCAAATGGTAACTCTCTTCATTTCCCGTCTTGCAATTAGTTTCTTCTGTTTAAGAGATCAAGAGATT CATGACCTCGCAATTCAGTCTGCAAATTTGAGCTTAGGTTTAAGTTTTGATGAAAAACATAGTGCTTGATGTTCAAGGGA GATAATTTAATTTGATTTTTATTTGCAGAAACCTATGATGCATGTGTATATTAGATTTTAGTCTCTTTTTTTATCTGCAA ATTAGTCTGTTTTGCTTGCAATTCTGCATAGACCAAGCATATCAGCTCTATTCTCTGAAAAAAAAAAAATAAGAGTGAGT GAGTACTTAGAATTAGTCCTCAAAAGATGCACACTGCACAGGATATCAATAAACATAAAATTAGGGATCAAATTGATGTC CAAAGATGCTTTGAGTGACTAAACTAATGTCTATTTTTAAACTTTGGAAGGAGGAATTTGAGTATTTAGTCCAAAAGTGA AGCATGGTTACTGGGTTCTTCAACCTCAGACAAGTTTCAATTAGTAAATGAACTTCAAATAAGAGTTATTTTGTTTACCT TTACCTTTTCAAAGATTTATCCTGTTTTTTTAAACTCTTGTATTAAGAAAATGAATGGGAACATTATGAGATGCGTACAT GGCTTTAGCCTTTAACATAACAATTTACAGGAACAATACAATTAGAAAGTGATAAGCTGGTAACTCCCTTTATGCAGGTT CCTAACAAGAATGATCCTTTAGTCAACTCTTCAAAGAGCAAGTTGAAAACTCTTAATTGGCAAGAACGTAGAAAGCTTGA AAGAGAACGAAAGCAACAAGTGGAGGATGAACAAACAATAGCGAAAGTGGAAGCTCCAATACCACAATCAAACATTGGGT TTAAAATGCTCAAACAGATGGGTTATACTCCAGGTTCTGCCCTCGGCAAGCAAGGCTCGGGCAGGGCTGAACCAGTGGGG ATTGAAATTCGACGGTCACGAGCAGGTATAGGGTTAGAAGATCCCCACAAGGAGAAGAGAAAAAAGGAAGAAATCATGTA TGAAAAAAAAAGGAGGAACGAGCAGGACTTAATGGAAGAATTTGGGACAAGGCTGAAGTCAAGATGGCAGAGTAGGAGAA TTATAGTTAATTTCAACAAGGCAAAGGCTGCCCTTGACCAATTGGAGAATAGGGAAGTTGAGGAGCCACCAAAGAATGAG GATGATGCAGAGGGTGAAGAAGAAGAAGAGGAAGAAATAACAGAAGAGGTGTGAAACGTCATATATTTTTCCCTCAAAAT TCTGGTATTCATTTAAGTTGCATGCTAAAATAAAATCAAGTTTTTAGGTGCTTTATGTGTTCATTATTTATAGTTTTTTC ATGTTTACTTATTCAGGAATGATTGCAGTTCATCTATTTTTTTTTTTCACAAGCATAGTCTTATTGAAATTACTTAATCA ATGTTTGTATTGGTTGTGAGTTGTGACATTGATGATGACTTTGTAATGGATGCAGGGCTTGCACGATGTTTTGATGAAAC TGAGGGATGAGTTTGACTATTGCCTCTTTTGTGGATGCAAAGTAAGTAAACCCAAGATTGATCTATATGTGTTTCGGTGT TTAGTTGTAACTCAAAACTGTTTTCAGATGGTTTTAAAGGATGGAATTGCTTATCCAATACCAATTAAGAATCCTCTAAC TTCATTTTTGGATTGTGTATTTTTTCTCTCCTTATTTCTTCAGTATGAATCAAGGGATGCCCTTTTGTCCAACTGCCCCG GAACTGATGAAGATGACCACTAAATTGAAAGACTCTGATGTGGATTACAGTGGATATCTTCTTTTTCTCAAGCACGTCCG GTTAGCTGAAAATGCATATTGCAATGGAGTAATATAGAACTCGTTTAAATGCAAAACATAGAGCTCTTATTGGAGCTTAT CTAGTGTATTTTTTTTCTCGTAGATAAGCTCCAATAATCCAGACGGGCTCATAATCTCACATCAGGTGGGTGATTGTGCC TCAAGTCATTCTCGTAGTTTTTCTCTGTCTTGACTGAACTATCCTTACAATTCTACTTGGCTGTTGCTTGATCTTCAAGC TGAGGGACATAGTGCCTTACCTATTGCAAGGTAAAAAATTGTAGCAAGGCATTCTACCACTCATTTCAACCCCATTTTTT CGTTATTGAAATTCACGTGAGATTCAATAGATTACATGGGGTCTGACTTTCAATTATGTTTTGTAAAAAGTGTAAGATAT TGTTTTACTATCATCCTCTTGAAGGATCTGTGTGGGTAGATGATGGTGTTTGGAAAGTTTTCAGTTCATATTAGAAATTT TCGTAGTAATTTCTCGTCATTTTTCAAGTTTTAGATCGTGGACATGTAAAATGTTTGTGACCAGCAATTCAGTTCTCAAC TTGATGCATTCGTTGTCATTAGATGTGGTAAAATGAAGTATGTACCCCTCAACAATCAAATAGAACGAAAATAAAATTAC AGAGGATTTGGTAATGAATGAGAAGCTTCTTTAAATTGAATCAACTATACTATTAATCTAATGCAAAGACTATTCATTGT TGTTATTAACAGTCTCTATGAACTTAACATCAAAATTTTCAAAATAACAATTCAT
CDS sequence (LotjaGi5g1v0142300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCCATTGCTCACCATGGCTGAATCAGCGACGAACGGGCAGAGCAACGACGGAGCACAGGGAAACGAAGAACAAGATGA TGACTACATGGCTGATCTCTCTCTCTTTCTTCCTTCCGAAGCTCTTCACCCTCCGAAATCTTCATCCCAAATGGTTCCTA ACAAGAATGATCCTTTAGTCAACTCTTCAAAGAGCAAGTTGAAAACTCTTAATTGGCAAGAACGTAGAAAGCTTGAAAGA GAACGAAAGCAACAAGTGGAGGATGAACAAACAATAGCGAAAGTGGAAGCTCCAATACCACAATCAAACATTGGGTTTAA AATGCTCAAACAGATGGGTTATACTCCAGGTTCTGCCCTCGGCAAGCAAGGCTCGGGCAGGGCTGAACCAGTGGGGATTG AAATTCGACGGTCACGAGCAGGTATAGGGTTAGAAGATCCCCACAAGGAGAAGAGAAAAAAGGAAGAAATCATGTATGAA AAAAAAAGGAGGAACGAGCAGGACTTAATGGAAGAATTTGGGACAAGGCTGAAGTCAAGATGGCAGAGTAGGAGAATTAT AGTTAATTTCAACAAGGCAAAGGCTGCCCTTGACCAATTGGAGAATAGGGAAGTTGAGGAGCCACCAAAGAATGAGGATG ATGCAGAGGGTGAAGAAGAAGAAGAGGAAGAAATAACAGAAGAGGGCTTGCACGATGTTTTGATGAAACTGAGGGATGAG TTTGACTATTGCCTCTTTTGTGGATGCAAATATGAATCAAGGGATGCCCTTTTGTCCAACTGCCCCGGAACTGATGAAGA TGACCACTAA
Protein sequence (LotjaGi5g1v0142300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MPLLTMAESATNGQSNDGAQGNEEQDDDYMADLSLFLPSEALHPPKSSSQMVPNKNDPLVNSSKSKLKTLNWQERRKLER ERKQQVEDEQTIAKVEAPIPQSNIGFKMLKQMGYTPGSALGKQGSGRAEPVGIEIRRSRAGIGLEDPHKEKRKKEEIMYE KKRRNEQDLMEEFGTRLKSRWQSRRIIVNFNKAKAALDQLENREVEEPPKNEDDAEGEEEEEEEITEEGLHDVLMKLRDE FDYCLFCGCKYESRDALLSNCPGTDEDDH
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 71 | 71 | - | – | |
| PANTHER | 22 | 269 | 248 | 3.2E-84 | ||
| PANTHER | 22 | 269 | 248 | 3.2E-84 | – | |
| MobiDBLite | 43 | 68 | 26 | - | – | |
| SMART | 99 | 145 | 47 | 1.7E-13 | ||
| Pfam | 101 | 144 | 44 | 6.4E-15 | ||
| ProSiteProfiles | 101 | 147 | 47 | 14.34 | ||
| Coils | 152 | 172 | 21 | - | – | |
| MobiDBLite | 199 | 231 | 33 | - | – | |
| MobiDBLite | 211 | 228 | 18 | - | – | |
| SMART | 215 | 269 | 55 | 1.6E-16 | ||
| Pfam | 218 | 269 | 52 | 2.4E-17 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. |
Expression pattern of LotjaGi5g1v0142300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…