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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0143400 |
| Transcript ID | LotjaGi5g1v0143400.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | transcription factor-like protein; TAIR: AT5G06839.3 bZIP transcription factor family protein; Swiss-Prot: sp|Q52MZ2|TGA10_TOBAC bZIP transcription factor TGA10; TrEMBL-Plants: tr|A0A151U2N8|A0A151U2N8_CAJCA Transcription factor HBP-1b(C1); Found in the gene: LotjaGi5g1v0143400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:35744184..35749612) extracted from Lotus japonicus Gifu genome v1.2.
ATGAGACCACCACCAACTCTCAACATTTTCCCATCTCAGCCTATGCACGTGGCTCCACCATCCAATTCAAAGGTACTAAA AAACAAGTATATCAGACAATACATAATCTTGATTAGTATATATTTGAATATTAACTACCTGCTAATTATATATCTGACAT ATATTTAATAATTAAAACTTTGTTTGTATTTGACATAGACCAGCATGCAATTACCTTCTCCACAAACTAGTGGTTCCAAG AGATCTACACAACCGTCCATGGAGTTGGCCAACCCCCGAAATCAAGCCATCACCTCTGCACCTCAACCACCAAAAACTGT AAAGGTACCATATATATTATATACATATTCTTATTTTTCTGTCACTATTGTCACCTACTTCTTAATTTTAAACAGCCCAA GTGTATTTTCATAACTCCACCTTAATTTTTTTTTTCTATCTTTTTTCGATGAAATGATATCATCTATCACATTTTTCAGT TCTCTCTTTCTTTTGTTTCTGTCTCTTTCATTTAATTTGTGATGTATACAAATATTTTACCAAACAACTACACAATATGG ATGTCATGTTGCAGCGAGAGAACAATCGAAAGGGTACTACCTCAAGTTCGGAACAGGAAGGACCCAAAACGCCAGATCCT AAGGTTAATTGCTCTTGATTATATACATTTCTTTATTACTCTCTTTTTGTTGTATTTGATATGAAAAATAATAAAGCTGA ATGTGTGCTTTGAAAACGTTATACATAGACACTGAGAAGACTAGCTCAGAATAGAGAGGCAGCAAGGAAAAGCAGGCTCA GGAAAAAGGTGAAGTGAAATCCCCTATAAGATTATGATTTTGGTTTTATCTCAACTGTTTTGTTTTACACAATTTTTTCA AGACATGTCAAAGGTTTCTATCTTAATTGCAATTTGACCCTCTCTCTCTATCTTTCTCTCAGGCTTATGTTCAACAACTA GAGTCAAGTAGGATCAAGCTTAATCAGCTGGAACAAGAGTTACAGCGCGCCAGAGGTCAAGTAAGCAAGCTAAGGAACCC TCCTCTTCTACACTTAAGTGCTAATAATTGAGCATGCCATGATATCGAAAATGTTGCAAATTGTAATGCAACTTAAAACA CCACTTAATTACAAGTAATTCATGTCTCTATTTTAGGGCATGTTATTGAATGGAGGTGGGCTTTTAGGAGGAGAGCAAGG CATTTCTGTTTCCATGAACAACATAAGCTCAGGTTTCATTCTCTCTATTATAGTACAAAGGTTACTATACCAATGTTGGA GCGGTCGTTTCTCAACATTTTATACATATTTTATATTTTGTGAAACAAATTTAATAAATATTTCAGAGGCTGCAATGTTT GACATGGAATATGCGAGGTGGTTAGAGGAGCACCACCGAGTAGTGTGCGAGATGAGGGCTGCGTTACAAGAGCACCTTCA TGAAAACGAGCTTCGGTTATATGTGGAGAATTACTTGGCTCACTATAATCAATTACTGAGCCTCAAGAGCATGGTGGCCA AAACGGACGCGTTCCACCTTGTTTTTGGCATGTGGATGACACCAGCTGAACGCTGCTTCATGTGGATCGGTGGGTTTAGG CCATCTGAACTCATTAAGGTGCTCACACAAACCAAGTCTTTTTAATTGAATAGTTTTTCACAACTGGGTTTTCGCTAATT GGATTGGGCAATTCTACTGCAGGTGTACATATTAGATATTATTTCATTTATAAATCATGTGCATACCTTCAAATAACAAT CGTTAAAGAATTAAGGGAGTATTTCATACAACTTTGGATTATTCTAATATTTTAGTAAATTTTAACTAAATGCAAATGAT ATGTGCTCTATATTTTTTAATTTTTTGATATATTCGTGTCCCACTCAACACATTTTGTAACAATTATAGATGACAAATTA TCACAAGAAAATCATGGTGAAAGTTCTATTTACCTCTAATTTAATTTTTTCCTCAAAATTCTTCAGGTTTTTTTTAATTT ACATAAAATTATATTTTGGGTTCTCAGGTGATTGTTTCTAGACAACTTAATACTACTACTAAGAGGTTGGTTATATAAAT GAATTGACTAAGTGCGTTGGTTAGTTAATAATGAAATTTTAAAGGCAATGACATCAATGAATGGGGAATTATAGCTATCA TGAAGGTTTCTGTTATTGGATAGAGTTAGGCTTCATTCCCATAAAGCCGTTCCTTTCACTCCAATTTCTTCTCTGAATCA GAGATTGATTGATTAAGAAGGAGAGTGGCACGGGTCTCTATCTTTCGTTATCTTCTTTCCCTCTGTAGTTGATGGGAATG AAATTCATGTTTCCATACCCCACTTTTTCTTCGTACTTTAGTTAATCAGTGAACAAACCCTTCTTGACCATGAAATTCTG TGATACACAACATGTATACCAAAGGAACCTAATTCCTAGACCATGACCTATTATTATTAGTATGTACACTATTTTTTGGG GTTATAACATGTTAATTTTATTGATTAATTTGCCTTTTAATTTGTTTCTTTAGATTATTCTAAGTCAAATTGAGCCTCTC ACGGAGCAACAAATACTTGGAATATGTGGATTGCAACAATCAACACAAGAGGCAGAAGAAGCTCTTTCTCAAGGACTTGA AGCTCTTAACCATTCTCTCTCAGATACTATAACATCTGACTCCTTGAGTTGTCCTCCAAACATGGCTAACTACATGGGAC AGATGGCTGTTGCAATGAACAAGCTCTCCACTCTTGAAGGCTTTTTGAGACAGGTATTTAATTTAATTACATGCTCTAAT TAATTTTCCTAATGTTTTCTCTCATAACTTTGAAGAGAGTGCATATATATATATTTTCTCTAAAAAAGACATGATATTGA ATTTGTTGTGTGATTGGGTGGCATTTTTTGTGTTATTGTGTGATGTTGGTTAACTAGTTTTGTGGTCCCCATCAGGACAT TTTTGCCATATTTCCATAACTGATTTTGTGGGGGTCAGGTAGGAACAAGAATCTATTTCTCTTCGATTGGGTAGGGCAAC CTGCTCCAACCGTCTGATGAACTGCCATTTGCATGCATGTCTCGTTCTCATGTAGTGGTTGCATTGAATCTAGAAACATG GATTGTATTTATATATATGCATACATATATATATATCAACTTTATTAAGGATATATATATATAATTAAATGTGACATAGT TAAGTGTAGATTTAATCTATGGTAGGCAATATTTAAAATATAAGGAATCATGTCTTTGGAGAAATTGTAATAATTTTTCG AATAAAATTAGCCTTGCCTTAAATCAATGTGCAATACTGTCAAAAAAAGGTAGTTCCTTTGAAATCCATTTTTTTTTTGT ACTTGATTAATGAATAAGGTTTTGTACTTAATTATACTAAGTAAAGCATACAAAGGTAGCATAATAAGGATAGCTTGTAC GGGCTTTGAGATATCCTTCCTTCCTATTTGTGATGTAAATCTATGAAGATATAAATTGATTATTGTTGCATTTAACATTG AATACGGTATGGTTACTACTAATTAATCAACAGGTTAATTTGTAATCGATCATATATACACGTGAGACTAAAGCAGATTA GTGTGGTCCCTCACACGGTTAATTATAACCCTCATCATAAGAGACATTTTGAAGTACCCCATATAGTATATCTGTGTGAT GTCATGGTCGTACTCGTAACCGTAACTTGAAGGCACAATACACAATAATGAGTCTTCACCATAACTTGTTCTTTTGCTAT TTAATAATTAGAGTAGTATTTTAGTGTTATACGGGGGTATCATGCTAAAAACTAGTCCACCAATAAATAATAATTTTACA ATTAACCTCACGTATATGTGTTATTTATAATATATTCTATATAGTAAAATTAATTTATTAGACGAGCATTGTAAATCATG TTTTTGTTATTCGTGTTAAAACATATTAAAATATGGAAAAGAGGAAAATGATTAACATATTACTCTGTCTTTACTACTTA TTTATGTGTGTGAGATAACCTATCATAATAAGCATCAGAAACTAGAAGCATCATTAGGTATGCAAAACAATCAAAATGTT TAATGTATTTTAACAAAAGCGGCCTTTCCCATTAATCAATTTCTAAGCTCATCCTGATTCAATTTGACTAGTGTTTTATT TTATCTAGAGCTAATATTCAATTTTTTGGTCTCCACTTGTTGTTCACCATATATATCGTCCCTTAATTTATGTAGGAAAA TAAAATATACAGTACTCTGGGTAAGAGAGAAAGAAAGCAAAGAGAGACAGTGAAAATGGAAAACAGAAAGATGTCAAAAA AAATAACATAGTGTGAAGTGCACGTCTGATATTAAAGTAGGGCATTAGGGTGAAAAAATACTTACCTATATATTAATTTT TTTTATAGGCAAATGTTAGTGGTTAGTTATTAGTAAGTTAGAAAATCCTTCAAAGTTCTCTTCCAGGATTCGATCCTGGA CCTTCCCCTCCCCACCCTTATGTCTCCTAGCTCTTACCACTTTAGCTAACTCTCGGTGATAACCTATATATTAAATTATG ATGTTAGAAAAATTGTAAAAGTTAATTTCTCAATCAAAAACTTGAAAATTTTGCTGATTTTATGGTCAAAGCCATCATTT TTTTCCGTTGCATTTCAGAAACTTTCCCGACGTTGAAAAATAATTATAACAGACCTATTTGAAGATTCTCCCCTATAACC ACGGCCTACTTTTGCTAATTAAGACTTCTGTATAGATATTATAATTAAACATGTTCAATCATTTGACTAGCTAAACTCTA TCGTATTATAATCAATAAGTCGGGGTCATAAGGTCAAGTTCATGTTTAAAAACCACAGTTTGAAAAGAAGGAAGCCACCT AACATTACCTCCAATCTTCTAACAATTTTATCTGTTCATTTGGTCCTAATTAAGTCCAGGGAGTTTACAAAATTTTTATT AAGTCTTTGTTTTTTTTTTGTTACAATAGTTCACAAGTTAAAGTTATTTTTTACAAAATAATTTTAGTACATAAAAACAT ATTATAAATAATATATACTAAATATGAACAATACAAAACATGCTTCAAAATTGGACTAGTTTTAAACATGATCCACTTAT GTTAAAAAAAAAAACATGATGCATGCACTTGTAGTTTTATTAATAACTATGTGGCGTGTGACTACATATATAAACATTAA TCTATTTCATGCTGAAGCTACGCTAAAGTTCTCTACAACAAATATTTAAGTGATGAAATTGTTTGAAACACTGTTACAGG CAGATAATCTTAGGCACCAGACCCTTCACCGTCTCCACCAGCTGCTAACAACACAGCAAGCGGCGAGGTGTTTGGTGGCA ATATCTGAGTACTTCCATCGTCTACGAGCACTGAGTTCTCTGTGGTTGACTCGCCCTCGCCAAGAATAG
CDS sequence (LotjaGi5g1v0143400.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGACCACCACCAACTCTCAACATTTTCCCATCTCAGCCTATGCACGTGGCTCCACCATCCAATTCAAAGACCAGCAT GCAATTACCTTCTCCACAAACTAGTGGTTCCAAGAGATCTACACAACCGTCCATGGAGTTGGCCAACCCCCGAAATCAAG CCATCACCTCTGCACCTCAACCACCAAAAACTGTAAAGCGAGAGAACAATCGAAAGGGTACTACCTCAAGTTCGGAACAG GAAGGACCCAAAACGCCAGATCCTAAGACACTGAGAAGACTAGCTCAGAATAGAGAGGCAGCAAGGAAAAGCAGGCTCAG GAAAAAGGCTTATGTTCAACAACTAGAGTCAAGTAGGATCAAGCTTAATCAGCTGGAACAAGAGTTACAGCGCGCCAGAG GTCAAGGCATGTTATTGAATGGAGGTGGGCTTTTAGGAGGAGAGCAAGGCATTTCTGTTTCCATGAACAACATAAGCTCA GAGGCTGCAATGTTTGACATGGAATATGCGAGGTGGTTAGAGGAGCACCACCGAGTAGTGTGCGAGATGAGGGCTGCGTT ACAAGAGCACCTTCATGAAAACGAGCTTCGGTTATATGTGGAGAATTACTTGGCTCACTATAATCAATTACTGAGCCTCA AGAGCATGGTGGCCAAAACGGACGCGTTCCACCTTGTTTTTGGCATGTGGATGACACCAGCTGAACGCTGCTTCATGTGG ATCGGTGGGTTTAGGCCATCTGAACTCATTAAGATTATTCTAAGTCAAATTGAGCCTCTCACGGAGCAACAAATACTTGG AATATGTGGATTGCAACAATCAACACAAGAGGCAGAAGAAGCTCTTTCTCAAGGACTTGAAGCTCTTAACCATTCTCTCT CAGATACTATAACATCTGACTCCTTGAGTTGTCCTCCAAACATGGCTAACTACATGGGACAGATGGCTGTTGCAATGAAC AAGCTCTCCACTCTTGAAGGCTTTTTGAGACAGGCAGATAATCTTAGGCACCAGACCCTTCACCGTCTCCACCAGCTGCT AACAACACAGCAAGCGGCGAGGTGTTTGGTGGCAATATCTGAGTACTTCCATCGTCTACGAGCACTGAGTTCTCTGTGGT TGACTCGCCCTCGCCAAGAATAG
Protein sequence (LotjaGi5g1v0143400.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MRPPPTLNIFPSQPMHVAPPSNSKTSMQLPSPQTSGSKRSTQPSMELANPRNQAITSAPQPPKTVKRENNRKGTTSSSEQ EGPKTPDPKTLRRLAQNREAARKSRLRKKAYVQQLESSRIKLNQLEQELQRARGQGMLLNGGGLLGGEQGISVSMNNISS EAAMFDMEYARWLEEHHRVVCEMRAALQEHLHENELRLYVENYLAHYNQLLSLKSMVAKTDAFHLVFGMWMTPAERCFMW IGGFRPSELIKIILSQIEPLTEQQILGICGLQQSTQEAEEALSQGLEALNHSLSDTITSDSLSCPPNMANYMGQMAVAMN KLSTLEGFLRQADNLRHQTLHRLHQLLTTQQAARCLVAISEYFHRLRALSSLWLTRPRQE
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 92 | 92 | - | – | |
| PANTHER | 5 | 380 | 376 | 6.3E-218 | – | |
| PANTHER | 5 | 380 | 376 | 6.3E-218 | – | |
| MobiDBLite | 15 | 64 | 50 | - | – | |
| SMART | 85 | 158 | 74 | 1.8E-8 | ||
| ProSiteProfiles | 87 | 131 | 45 | 9.243 | ||
| Gene3D | 89 | 140 | 52 | 4.4E-10 | – | |
| SUPERFAMILY | 89 | 131 | 43 | 3.7E-7 | – | |
| Pfam | 89 | 127 | 39 | 2.2E-8 | ||
| ProSitePatterns | 92 | 107 | 16 | - | ||
| Coils | 108 | 135 | 28 | - | – | |
| ProSiteProfiles | 162 | 376 | 215 | 31.646 | ||
| Pfam | 181 | 254 | 74 | 9.9E-29 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA-binding transcription factor activity | A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units, and include bacterial operons. | ||
| Biological process | Transcription, DNA-templated | The cellular synthesis of RNA on a template of DNA. | ||
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. | ||
| Molecular function | Sequence-specific DNA binding | Interacting selectively and non-covalently with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding. |
Expression pattern of LotjaGi5g1v0143400.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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