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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0144800 |
| Transcript ID | LotjaGi5g1v0144800.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Basic helix-loop-helix transcription factor; TAIR: AT2G42280.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein; Swiss-Prot: sp|Q66GR3|BH130_ARATH Transcription factor bHLH130; TrEMBL-Plants: tr|I1JG31|I1JG31_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0144800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:36522079..36526098) extracted from Lotus japonicus Gifu genome v1.2.
CGCGCAATAACATTTTCGTATTTCCCCACTTTAAAATGGGGTGAAAAATCCAATAAATGATGTTCCAAATCCAATCCCCT CGATTGAGGGTTCAAATATCGGGACTGTTTCGATTATTTTCCTTTTTTGCCATGGAGCCTTCCCAAGACTAAAGAGAGAG AAAGAGAAAGCACTTAGTCACGAAGACCGACTGATACTTTTTGTACTTTCTCATTGGCTCACGTTCAACTTAGCACACCA CTTACCTTCTCACTCTCTCTCTCACATTCATAATAAGATCTTCCTTGCTTTCACTGCTTTCAAAAGCAAATCTAAAGCTA CTGCACTTGGTACACCCCCTTTTTTATTCATTCATTTATTTTATCCCTATCCTCCATACCTCTTCTCCTTGTCCTTTTCA CTGGATCTATCAATCTCTGCTAGCTTTTCTCCTCTTTGAATTGTGTGCAAATTAACCTCCTAGCTGGGTCTTCTCTCTTT AATTATTTTGGTTCTCCTGAGATTGTTGCTTCTCCTACAAGATCTTATCCCTCCCACCCAACCCAGCTTTGTTCTTAAGC TGAAACTTTTTTCTCATAAAAATTCTCAGAATTTTCCTCTCTCTCTGGATTAAAGTGACCAGTCTTTTTTGAATAATGAT TCCCAATCTGGTCCTTTTATTTGTTCCTCTTTTTATCCTTTTACAGTGACATCAGTGATATGATATAACTAAGCATATAT TATATACATACACATACATATAATTACATATACACAACAAAAATAGTAACAATGGATTCCAATCAGAATTATCAACTACA ACAACAGAATCAAAGTTCTTCTGGGTTGCTTCGTTTTCGCTCTGCGCCGAGTTCATTTCTTTCAAATCTCACACCTTCTG TTATCAACAACGAGAGATTGCTCAACAGATTTGCGAGTTACGGTGCAGCTGATACCAATAGCATTAGCATTAGCTGTAAC GATACCTCTGCAGCTTCGCCTAGCTTCCAAGATTTCGAAGAGAACAAGCCTTTTTCTAAGGGCATGAATTCGCAGCAACA GGGTTATGGTGGTGCTGGTGCTAGTGCTGGGTTACCCCCTCACTATCCGAGGCATGGTTCGAGTTCCGCCGCCATGGATG GATATCTTCTCAGGCAGGGTAGCTCCCCTGCTAGCCTTTTCTCCAACGGTTCCTTTCAAAATGGTATGGTGCTTGATCTT CTTCTCTGCTTCCTCTTTTGATGATTTTATTTTTTTTATGTAGGTTTGGTGTTTGTGTTTTTCTTCAGTGAATTGAATTT CTTGTTGTGAATTGACAGAGTTAGTATTTACAAGAGTTTAAATTCTATGCACCGACAGCGTAAAGTATTTTTTACACAGT TAACCAATCAGATTTTAAGGATGTGAGAAAATATGATTTTACAATCTGAATCAGTGCATTTTTTTAGGGGTAATGAGCTA ATGATGTTTGCTACTTACTTGCTATGGTGAACTAAATTGCAATCCTTACTACCTTCTCTTTTCGAAGGTTTAATGTTTGT GCTTTTGCTTCAGTGAATGGAATTTCTTCTTGTGAATAGGAAGAGTGTTTATAATCTGGTTCACTGCATTATTTAGGAGT AATGAGCTCATGAGTTTCAGCTACTTGCTATGGTGAACTGAATTCCAATCGCGGAAATTTTTGTATTTGAAAATAGAAGA TAATGATTCGGATCGGGACATGATATGCAATATAGGTCGTTTAAATCTGATGATCCGAATTGTCTATGCTTGTTAGGGAG ATGGAATCTATCAAACTCTTCACTGAGTGAAATCTCCGTATGCTTGGTATTTGTAGAATTCAGCTCAACCATCACTTAGG TGTAGTTAGAGGCACTATTGGAAATTTAAGCTTATGTGAAATTGTAATAGCTTCACTTTGAGGATCTATAACATTATGGA AGAAGCAGAACAGAACATGATACGATATTGAACCGGTTAGATTTTTGTTTCTATGAAGATGAATTTATTCCTTAGTATTT TCTGAGAAGTTATGCATTTGTATATTGCAGGGTTTGGCGCCATGAAATGTGTTGGAAACTATGATGCAGTGAATGGCAAT AATGGCCAAATTAGTCCATCTATTGATAGGTTGAAGAGTCAGATTAGCTTCTCATCAAGAAGTGCTTCTTCTTTGGGAAT GCTGTCACAGATCTCTGAAATAGAGGGTGAGGAGGACATTGGGGCAACTAGCCCTGATGATGGGAGGCAGGGAGGTGGCA ATGGCCATGGATTCCCCTACACGTCTTGGAATGATACTCCACAACTCTCAGAGAATTTCATTGGCTTGAAAAGAGGGCGA AGTGGTAATGAAAGGATGTTTTCTGAACTTCAGGTATGTATAGAAATGTTAACTTTTTTTTTCTTTTTCTTTTCAGTTTT CCTTATTCTCAATGTGAATACATTGTTGTACTCAGAATGGAGAGCTAGGAAGTCAGGTTCATACGTTAACTCATCACTTG AGTTTACCGAAAACTTCAGCAGAGATGGCTGCTATGGATAAGTTGCTTCAGTTCCCTGATTCTGTACCTTGTAAAATCAG AGCAAAACGAGGCTGTGCTACTCATCCTCGAAGCATTGCCGAACGGGTAAGAATTTTAGCATGTTTTGTTAAGCTTCTTT TCCATACGAATCAATTCTGAAAGATTGAAGCAACTCACAGAAGCTTCTTCCTAAATTGATGCTCACTTTCAAAATCTATA TGCTAAAAGCAATTGTTTTTTTAAAGCATCTTAAAATCTTGCAGTCATGAATAAACTAACTATTGGGTGTAATAAAGTAT TTCTTAGTCATTTCCTTTCCCAAAACCAAGAAAGACATTATTTAGAATAATCTGAATCCTAAAGTAATTGGTAAAAGATT ATCTAAAAGGCATTTTTTTCAGGTGAGAAGAACTCGGATCAGTGAACGAATGAGAAAACTACAAGAGCTTGTTCCAAACA TGGACAAGGTAAAACACATCAAGCATGTTTGATAGTGGAATATATAATTATGCAGAAAAATAATGGTGTAGTTGTGTTTG GAAGGTTAACATTCTTATGTTCTTGGCAGCAAACTAACACATCAGACATGTTGGACTTGGCTGTTGATTACATTAAAGAT CTTCAGAAACAATTCAAGGTACATAAGAGGAGAATTTGGTTGTGATTTCCACCCTTATAATCATGTAATTGATATTGACT TGTTCATTTTTGCACTTTTTTTTTTCTCTCAATTACTTGCAGACTCTAAGTGAAAAAAGGGCAAAGTGCAAATGTGTGAG CACGCAAAAGGCAGAGACAAACCCAATTGCTTGACAAAACTTTCTCTAAAGCATGCAAAGATGCAGATGCCAATGACCTG GTACTTATGCATTCGAGCTAAAAAAAAGTAGAAAGAAAGAGGCTAATATATAATGCTATAAGCTATCTTTATTGAGTGTC ACACCAATTACTAGCTTGTAGGTTTTCGCCCCAATATATAGGTTCTTTAGGCTAACGGAGTTTCAATTACATAATCAATA AAGCATATAGTATATTTGTAATTTTGTATAGCAATGTTCTAATAAATGTTTCCCTTTTAAAGTAATGTACCGTTTTTATT CTTGTAGAAATATGAAAGTTTACATTACAACAGTTTAGAAGAAAAGTTATTTACTTCAATTTCAATTTATTTTAATAATG AAATGGTGTTATTCAAAATGAATTTTTTTCTTGGTAGTTAGTCTCATGGTTACCGATGACCTATGGAGATACCTTGGCTA AGAAAAAGAAACATTTTTCTGTGGGGTCAAATGCAAAAATCAAATTCAATCTAATCCAATTAGAGAGAATTTCGATTGGA TAAGTCGTGGATCATTTTATTGTTTTTTTTAAGGGATATTAAATAAATTTTAATATACACATAATATTACATGAGTTAAT TTAAACCATGAAAATGCTTCATAATATAATTATAAATGTGAAATTAACATAAGTTTAACTTACTTAATTTTCATTTTTTT ATTTAATTATTTTATCTATG
CDS sequence (LotjaGi5g1v0144800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGATTCCAATCAGAATTATCAACTACAACAACAGAATCAAAGTTCTTCTGGGTTGCTTCGTTTTCGCTCTGCGCCGAG TTCATTTCTTTCAAATCTCACACCTTCTGTTATCAACAACGAGAGATTGCTCAACAGATTTGCGAGTTACGGTGCAGCTG ATACCAATAGCATTAGCATTAGCTGTAACGATACCTCTGCAGCTTCGCCTAGCTTCCAAGATTTCGAAGAGAACAAGCCT TTTTCTAAGGGCATGAATTCGCAGCAACAGGGTTATGGTGGTGCTGGTGCTAGTGCTGGGTTACCCCCTCACTATCCGAG GCATGGTTCGAGTTCCGCCGCCATGGATGGATATCTTCTCAGGCAGGGTAGCTCCCCTGCTAGCCTTTTCTCCAACGGTT CCTTTCAAAATGGGTTTGGCGCCATGAAATGTGTTGGAAACTATGATGCAGTGAATGGCAATAATGGCCAAATTAGTCCA TCTATTGATAGGTTGAAGAGTCAGATTAGCTTCTCATCAAGAAGTGCTTCTTCTTTGGGAATGCTGTCACAGATCTCTGA AATAGAGGGTGAGGAGGACATTGGGGCAACTAGCCCTGATGATGGGAGGCAGGGAGGTGGCAATGGCCATGGATTCCCCT ACACGTCTTGGAATGATACTCCACAACTCTCAGAGAATTTCATTGGCTTGAAAAGAGGGCGAAGTGGTAATGAAAGGATG TTTTCTGAACTTCAGAATGGAGAGCTAGGAAGTCAGGTTCATACGTTAACTCATCACTTGAGTTTACCGAAAACTTCAGC AGAGATGGCTGCTATGGATAAGTTGCTTCAGTTCCCTGATTCTGTACCTTGTAAAATCAGAGCAAAACGAGGCTGTGCTA CTCATCCTCGAAGCATTGCCGAACGGGTGAGAAGAACTCGGATCAGTGAACGAATGAGAAAACTACAAGAGCTTGTTCCA AACATGGACAAGCAAACTAACACATCAGACATGTTGGACTTGGCTGTTGATTACATTAAAGATCTTCAGAAACAATTCAA GACTCTAAGTGAAAAAAGGGCAAAGTGCAAATGTGTGAGCACGCAAAAGGCAGAGACAAACCCAATTGCTTGA
Protein sequence (LotjaGi5g1v0144800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDSNQNYQLQQQNQSSSGLLRFRSAPSSFLSNLTPSVINNERLLNRFASYGAADTNSISISCNDTSAASPSFQDFEENKP FSKGMNSQQQGYGGAGASAGLPPHYPRHGSSSAAMDGYLLRQGSSPASLFSNGSFQNGFGAMKCVGNYDAVNGNNGQISP SIDRLKSQISFSSRSASSLGMLSQISEIEGEEDIGATSPDDGRQGGGNGHGFPYTSWNDTPQLSENFIGLKRGRSGNERM FSELQNGELGSQVHTLTHHLSLPKTSAEMAAMDKLLQFPDSVPCKIRAKRGCATHPRSIAERVRRTRISERMRKLQELVP NMDKQTNTSDMLDLAVDYIKDLQKQFKTLSEKRAKCKCVSTQKAETNPIA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 12 | 359 | 348 | 1.1E-101 | – | |
| PANTHER | 12 | 359 | 348 | 1.1E-101 | – | |
| MobiDBLite | 82 | 108 | 27 | - | – | |
| MobiDBLite | 193 | 220 | 28 | - | – | |
| ProSiteProfiles | 292 | 342 | 51 | 14.9 | ||
| Gene3D | 294 | 365 | 72 | 2.1E-12 | ||
| SUPERFAMILY | 295 | 358 | 64 | 7.46E-16 | ||
| CDD | 296 | 345 | 50 | 3.66163E-12 | ||
| Pfam | 298 | 343 | 46 | 7.8E-10 | ||
| SMART | 298 | 348 | 51 | 3.5E-11 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein dimerization activity | The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits. |
Expression pattern of LotjaGi5g1v0144800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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