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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0145500 |
| Transcript ID | LotjaGi5g1v0145500.4 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Cornichon family protein; TAIR: AT3G12180.1 Cornichon family protein; Swiss-Prot: sp|Q9C7D7|CNIH1_ARATH Protein cornichon homolog 1; TrEMBL-Plants: tr|I3TAE6|I3TAE6_LOTJA Uncharacterized protein; Found in the gene: LotjaGi5g1v0145500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:36942511..36949514) extracted from Lotus japonicus Gifu genome v1.2.
ATGGGTTGGAATCTCTTCTTTTGGCTTGTAATTTGTTTCCCCTCCAATATTGCTCTTCTCGCTTCAACTTTCTACCAGGT TTCTTATTGCAATTTCTACATCTTATCCTTTTTATCTTGCTTTTTTTGCTGGCATTATTTCTACTAGGTTCAATAAATCA GTTAACTATTATTTATTTAAAAGTGTTGATGTTATTTTGTTTTTCCAATTTTGGGTTTCAGATTTTGATCCTGTCTGATT TGGAAGCTGACTATGTCAACCCATTTGATGCTTCATCTCGGATTAACTACTTCGTGCTTCCTGAGTTCATTGGGCAGGGA GTGTTATGTGCCCTTTGCCTCTTCACTGGCCACTGGGTCATGTTTTTGCTCACTGTTCCTGTTACTTGCTATCATGTCAT GCTGTAAGTCAAGTTCTTCTTCTGCCTGTTGTGTTTTATTTTTTTAAATCAAATGAAAGTGTGCAGTATGTTATGACTTA TGAGCATGATGTTGGATCTACTTCATTATTTTGAAGTGATGCTTTTGCCGTATATGCATATTAGATCTACTGAGATGTTG TATGGGTGGGTATTAATTGCTACTATAGTAGTTATGGGGAGTTATGCCTATAAGGAATGTGTGCTATAATAGGATGTGTT AGAATGAAAGAGTAGGGAGTGGTTATTTGCAAGTTCTGGATAGAAAACACTTTCTTTAGGAGTCACTTGACTCGGAGACA GCAACTTGGCTGTCTTCATGTGATATGTGTGATTTAGTGAAAGTAACCAACAAATTACGAATTAAATGTTCTACCATTTT GGTCTGACCTGCTGGATTTGAAATGAAGAGGTTTTGGGGCGAGTGAATTGGTCATTCCATCATGACCAGGGAGATTGAAT GCATGGATCTGTTAGAGGAAACAAATTGATGGACCGGAGGCCAGAATTGATGTTTGAATTAGCGTGAAAGAAAGGATGGG GGCATGGAGATTACCATGACTGAAAGGCTGTTAGCGGAGTGAGGAAGGTATTGGGCAAACATGTGGATTAGGAGGAGAAT GAAAGTTCAAATAGTAAATAGAGAGGTTCTTTTGGGAATGAGCTTGATTCTGACCATCATAACAATCTGGATGAATGTCA TATGATAGTCAAGAAGGTAAAATTTGCCGACCTTTAATGGAGAAGACCCAATAGGATGGATCACTGGTTCACAAGAGTAG AAACGTATTTTGAAGTGAAGAATATTTCATAGGAAGTTAAAATTAAATTGTCTAAACTTAAGTAAGCAAGGGTTCAACCA TTCACTGGTTCAACTTTTTAAGCGAAACAGAAGATGATCTAACTTGGGAGAAATTGAAGATGGAAATGGAGGCAAGGTCG GAGGCAGACAATATGAAAATCCTTACTAAGAATTAACAGAATTGAAGCAATTGGGAACAGTAGAGGAATATATTGAAGTA TTTGAATTCTCTCTCCACTTGTTAATAGGCTGCCTGAGGGACAATATTTGGTAGGTTTACTGCCAGAGATGAAGCACCAA TTCATACCTTGAGGCCTCAATCAAGTCATCAAGCCATGCAAATGACTAGAGGTATTGAAGCACAAAAAATTGCATTGTCT TGTGAAGATGGAAGTTACATATGGTGAACATGGAGTGGAGGACTCGAAAGTTTTGTAGGTGGGAATGGATCCTCTCATGT AACATGACTACATGAGAGATCTAAACCATCAAAAATGTTTTTTATTTTTATTTTTATTTTTTAATATATTTTAAATGGAT GAGATCTCTCTCATGTGGTCATGTCACATGAGAGGATCTATTCCCTTTGTAGGGTCTGCAAAAAGCAACTCAGGGGTGTG AGAATGGGTGAACAATTTTGTAGCCGCCTCAACCACTTCAAACAAAGACAATAACAGTTTGCGCAGTGGATGAAATCGAA CAGGAAACACAAAGCATGTTTCATCTTCTTTGTGGTTTCTAATTGGCGAAAATCAGAAAAAATGAGCTGACAGTCGGCAG AAAAATTAAGGGCATTTGTCTATTAGCTTATAAGGAACTAATGGAGAGAAAAAGTCAAGGTTTCTACTTTAAGAGTGGAG AAAAATTCTACCCATTGCATCAGTGCAGAGAAGCAATTAAAATTGATGATTTTGGTGGATGATGAAACACAAAATCCAGA GGTTAAAATAATTGCAATTGAAGTAGATGAAGAAAAGAGGAAGAGACTTTAGAATGCAATGTATTAGGAGTGTTTGGAGT TCCTAGTGGTGTCTTAACAGAAGTAAACAACGCACTGAAATGGAAGGTTGATTTAATGGAGTATAAATGGTGGTTCTAAT GGATAGTGGTGCGAGCTACAACTTCATTAATTCACATGTCTCTTCAGCCTTCAACCTTACGGTGGATAAAATTAAGACAT TGGGTGATGTGAGTAGACGCCAAAAGGATTTGTAAGGGTTTATTAATGAAATTAGGAGATATCAATGTTACGATGGATGC TTATTTGTCAGGTTTTGGGTTTTTTGATATCATACCTTGAATTGCATGTCTGGAACACTGAATCAGATAGTGAAATTGCA AGGAAAAGGAAGATTTAAGAGATAAAATAAGAAGTAGTATCTTCCGAATACTGAATGAGTAGTTTTAATAATCTTTTGGA GGGTTCATTAAGAGAAGTTAGGGGACTATTGTGGACAGTAAAGAGTGGGTCTGATGAACAAAAGAATACCCACCTAAATG TGAGCCAGCAGCGGGAGTTAGCTAAAGTGTTAGGAAATTTTCTGTGGTTTTCAAATAATTGGAAGGCCTGCCACCACAAA GAAATGTAACCTGGTGCAGTTCCCGTGAGTGCATGACTTTATAGGTACCCTCATCAATCATCATCACAAAATATAAGAGA GAAAGGCAAGGACAGGAAATGCTCCAGCAAGGTATAATTCTTCAAAGCTCTGTTGCATTTTGCAGTCTGCTGATTTTGGT TAAAAAAACAAGGAATCTTCATGGAAAATATATGTTGATTATAAAGCACTTCATAAAGTTACAGTACAAGATAAATATCT TATGCCTGAGGTAGATGAATTGATAAGCGAATTACATGGGGCTGCTCATTTTTCTAAATTAGGTCTTAATTCTGGCTACC ATTAGGTTCGGGTTAAGGTGGAAGATGTGCATAAAACAACTTTTCTAACCCATGAAAGACTTGATGAATTTTTGTTGATG CTTTCTGGGTTGACGAGTGCTCATGCAAGATTGCAACCTTCGAAGCAGTTATGAACAGACTTACAAGTCTCACTGGGGGG ATTTGGGCCAGTATTTTTTATGATGTGTTGGTTTATAGAGCAAAATGGGAGACTGATCTACAGAGTTTATCTCAGGTGTT GTTGGTGTCGCAAGTTAGTTTGTGGCGAATCAGAAAAAGTGCAGTTTCAGGCTGGAGCAAATTGAATATTTGGTGCATGT TATATCCGACAAAGGAGTGGCAATAGATCAAGCCAAAGTAAGAAGTGTTTTGGAATGCCCAACTAAAAATATTAAGGGAG TAAGGGGATGTTTACACTTAGCATGCAGTTCCCAAATAATAGCACCAGTCCTGAGTGTGCTCATCTCACTAAAAGTAAGT ACGGTGAGATTTGCTCTACCCCCTCTACCACGACAACTATCTTGTCCATGTCCTTGGTATCCACGACCAATCAAATTACT TAAAAAATGCAAAGGAATCAGTTGATGTCTATTTTCTGGTGAAGGGACTCGAATCAACCGATCTATGACTTCTTCCACTG TAGGAATGCTGGAAGTTGTCTAGGTCTGATGTTCCGGACCATTATGGAAGAATATTCGGCCAAAAATGGATTGGAATAAA CAAAATCGTGAAAAAACTGCCCCGATGTCATACAACTTAATCGACGAATTGGAACAACTGCTGTTTTCAGCTGCTGTCCC CCCCCCCCCCAAGGGCAGGTTCTGACGCATTACTCACCCGTCTGCCACTGGAAATACCACTTCCCGTCCCAAACATCCAT AGTCCATAAAGCCCATTAAGAATAAACACCATAAACACATTATCTACCTTGCCCTGCACCTTTTGAGGGTCACCACTAAC CAACACTAGTTTGCGCTCAACAATAGTGGAGTGAGCCTGATTCAAATAAGACTGAAGTCACGACTGGTCATCTGAAGGAT TGGGGGCCATCGAACAATCTCATTAAATCTTTGAGTATCATTATCATAAACACTTTGGGCCTGTCTCCAAACATGATGAC ATGTCTTGTATTGTATGGACGGACCATCAACTTGGAATAAATAGACTGCCATAATAACGGTAATAGTTGATTATTAGCTC ATTGCCATTCATTTGTCTCTCTCTTGTCGATGTTAGAGGACTTCTTGAAGAGATGATCAAAATGACATTGACCTAAAATC CATACCTCAAGATCATTATACCAATCCATGTAATTCTTTCTGTTCAACTTCTGGGTAGTGTTGGCAAATATGAGCTTGCA AAGGAAATCAAGCCCCTTTTTGAGGGCTGTCTAGGAGTCAACTTTGGGATTTTTTTGCCATGAGAACAGGTCAAACGTAC AAACCAAACTGAATATGTCTCAATCATGAGACCCACAGATCAAAAGTGGTCACACAAATGAGGAAGCTCTGCCGAATAGA ACTTGACTAGTGGCATGACAGATATACCACCAAAGGGTGGGTTGTGAGCCCCGTGTGTTAGTGAGCGTTCGTTAGAAAAT TGGAGCATGAGGGAATATAGAGGGGGGGGCTATGAGCCTATGACTTCGACGTATCGAGGAGAGACCAATTGGTGGTTTTG AGATAGCTGGTGGTGTTTCTTAGAGGCTCAGACACCCTACAAAGACAGAAAACTGGGTTAGCCCCTTACGGCGTCGGCTA AACACAACTAAGTACCTGAAAGATCTCATACCAACTTGAATTTGAAAGTATTTTGAATTGCTGATGATATGTTACATGGT TGTGTGATGTGCAGTATTTATATACAAGGTTTTGTAGTCAATCCCTAAAGTTTAGGAATTACGCTATCAACTAAGTAGGA AAACTTTGATAACGAGATTACTAAGGAAATATAATCCTAATCAATCATTGAACTATTCATAGAAATAGGGAAGCACTATA ATGACCAGGGTTTTAACTATCACTCTGAAACACAAATATCAACCGCAACAAAATAGTACCGCTGGTCAACAATATCGAAT GGAACAATATGACGGTGAATCGCACGTCACGACCGCAATAGAGCGGTGTTGCAGACGCCACAGACCTTGACCTAACACCG TTCAGCCGGTACCAGCGTTTGGTAAAATGAAATGAATGCACGTCGTGGTGTGGGGTCAAGTGGAATTGAGTTTCGAGGAG GGGGGGACATTTATTGGGTGGTTTGGAGGGTTTTATATGAACTTCTCTCAGAGTGTCTGTTTGAATAGTCATTGATTTAT AAATATTGATATTTGAGAAACTTAAGCATATATAAATTTTATTAAATATATTGGTAGTTACTAGTTTATTCATGTTTTTA ACATTTTGAATATAGTCATTTACTTTGAAAGTTGAATATTACACAATAATGAAAAAATATAGATTATTAGATTTTGCACA TTATATAAATTATTATAATAAAGTTTGTGCGAAATTGTGAATAAATCAACCGCTACCCACATCCCAGCACACACAATACC CGTAAAGATGAAAACTGTAATGTGCCCGCAATTTAGTACCATGGTAATAACATAAATCTAAACAGTGCGGACTCTGACTT GCTGGAAAAGTTACTGTAACAAATTTACTTGATCAACAATAGGTTATACTGGAAATTTTACTGCTAGCTATCACTTCCTG CCACATGAGCAGATTTATGTGGTCCTTTTAACAGGTTTTTATGCAAATTTTATTACATCGTAACTGGTGCAGTCATTGAA GTAGTAATTAGGAGCCTTTCTATGTTATTTTAGATATACTCATCTTCATTCTCATATATTTGTAATTCTTATTTTATAGA TTAAAGTAGAGAAAGGAAAGATATTTGCAAAATTTTAAAATTGAAAATGCAACTTGCTTCAAATATTATTCTCCTGAGCT TCACTGTAAATATAAAGCCATTGTAAACTGGTCATGGAAATAGAATGGAATGAAATGAATGCATGGTGCATACTATCAGT ATTAGAATTTTTCTAGAGATGAGGATTTATTCAAGTCTTCATAACAAACATTTTGGTCATATACCTAGTTGATGTGGGAT CTTTACGTCCTTCATGCTTAGGGTTGGGCATCTGGAATGAGAAGTTCACAATACTGGATATCTACGAGTGCCCCAATAAC AAATCTATAATATACTTAGACACCTTATTAGAATTTTTGGTCTACTCAAGTCCAAAAGCTAGCTCAAGGGGTGAGAGTTG TCCAAGTTTTTGAAAGAAACATACCTAGTCGGTGTCGGATCTTAACGATGACAAAGCTAGTTTCACGTTAACAAATCTTT CAACTTGTGTATCTAAGTTAATGGTGATTCGGCATGATATATATTCAGGAAAGCATATTGCAATGACGAGGAATTGAGTT GTTTCTAATAATTTAGTTGTCTGATGAATTTATGTTTGCACTTTGCACCTATCTTGTTTTGTACTTCCTTTTAGGATTTA TCTTATGAACTTGTATGCTCTTTTATCCTGATTATTCCTATCCAACGAATCAGGTATGTGAAAAGACAGCATCTTATTGA TGTTACTGAAGTGTTTAGAGTACTTAATGCTGAGAAGAGATTTCGGATAGCCAAACTTGTTTTGTACTTAACAGTCCTCA TCGTCACTATCTTCAGGTTCGTTGCACTCATAAAATAACCAATGCTTAACTGATGTGCCTTAGATTGTGCTTACTGCTTA TAATTGTGTCTGTTTCTTTTTCTAATTAAGGTCTTCCATTAGGCTTCTTGCTGCAGGAAGACTAAAATTATACAATTCGA GGTTTGAAGAATTAGACATTCGGGTGAATACTCTAGGATTCTAG
CDS sequence (LotjaGi5g1v0145500.4) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGTTGGAATCTCTTCTTTTGGCTTGTAATTTGTTTCCCCTCCAATATTGCTCTTCTCGCTTCAACTTTCTACCAGAT TTTGATCCTGTCTGATTTGGAAGCTGACTATGTCAACCCATTTGATGCTTCATCTCGGATTAACTACTTCGTGCTTCCTG AGTTCATTGGGCAGGGAGTGTTATGTGCCCTTTGCCTCTTCACTGGCCACTGGGTCATGTTTTTGCTCACTGTTCCTGTT ACTTGCTATCATGTCATGCTGTATGTGAAAAGACAGCATCTTATTGATGTTACTGAAGTGTTTAGAGTACTTAATGCTGA GAAGAGATTTCGGATAGCCAAACTTGTTTTGTACTTAACAGTCCTCATCGTCACTATCTTCAGGAAGACTAAAATTATAC AATTCGAGGTTTGA
Protein sequence (LotjaGi5g1v0145500.4) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGWNLFFWLVICFPSNIALLASTFYQILILSDLEADYVNPFDASSRINYFVLPEFIGQGVLCALCLFTGHWVMFLLTVPV TCYHVMLYVKRQHLIDVTEVFRVLNAEKRFRIAKLVLYLTVLIVTIFRKTKIIQFEV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 131 | 131 | 2.6E-53 | – | |
| PANTHER | 1 | 131 | 131 | 2.6E-53 | – | |
| Phobius | 1 | 4 | 4 | - | – | |
| Phobius | 5 | 27 | 23 | - | – | |
| SMART | 6 | 127 | 122 | 7.6E-53 | ||
| Pfam | 7 | 127 | 121 | 1.5E-35 | ||
| TMHMM | 7 | 29 | 23 | - | – | |
| Phobius | 28 | 46 | 19 | - | – | |
| Phobius | 47 | 66 | 20 | - | – | |
| TMHMM | 67 | 89 | 23 | - | – | |
| Phobius | 67 | 70 | 4 | - | – | |
| Phobius | 71 | 89 | 19 | - | – | |
| Phobius | 90 | 108 | 19 | - | – | |
| Phobius | 109 | 127 | 19 | - | – | |
| TMHMM | 110 | 127 | 18 | - | – | |
| Phobius | 128 | 137 | 10 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Vesicle-mediated transport | A cellular transport process in which transported substances are moved in membrane-bounded vesicles; transported substances are enclosed in the vesicle lumen or located in the vesicle membrane. The process begins with a step that directs a substance to the forming vesicle, and includes vesicle budding and coating. Vesicles are then targeted to, and fuse with, an acceptor membrane. |
Expression pattern of LotjaGi5g1v0145500.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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