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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0146800 |
| Transcript ID | LotjaGi5g1v0146800.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Zinc finger A20 and AN1 domain stress-associated protein; TAIR: AT1G51200.1 A20/AN1-like zinc finger family protein; Swiss-Prot: sp|A2YEZ6|SAP8_ORYSI Zinc finger A20 and AN1 domain-containing stress-associated protein 8; TrEMBL-Plants: tr|V7BIA3|V7BIA3_PHAVU Uncharacterized protein; Found in the gene: LotjaGi5g1v0146800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:37352616..37355513) extracted from Lotus japonicus Gifu genome v1.2.
TTTGATATTTCCACCTGATACAGACATTGGACCGAACCAACCCAAAAACAGCACTCTCCTTCTTATCTTGTCTCTCTCCA ATCTCTCAAGCGCCTTTTAAATATCTCTATTTTCGCGTAATTCCTGCTCTTTTCGTCGATTATTATTATTATTATTACCA TCCATTGTTCTTTCCTCCATAATAAAGGTCACGATTATTTCCACCCTGTACTGCTGTTTTTTCTCTATTCTCTCCTTTTA ATAATTATTTATCTCTGATATTTCTCTTCTTTCAGTATTTGCCTGATCACACTGTCAGCACCCTTGAAACCAACCACACA GGTCAGAATTTTATTTCTTATTCCTGCGTTTTTCTTTTCAAAAAATCATATGCAATTCGTTTTTATTCTTTTTAAAAAAT TGATTTTTTTATTTTAGTTTATCTTGATGGAGTTGTGAAATCTGTTTCCAGATGATGGGGTTTAAAATTTTTTGAACTTT TTCCCCTGTTTCGGTGGCTTATTGGTTTGCTCCGTTTGTTTGAATGCTCGAATTATTGGTACATATTTACTTAAGGGGTT GTTGGGTTTTTGTTTGCACTTTTGCATGATTGAATTTGAATCTTTGATGTTGTGATTGGTTAGGTAATGTGTTGGTTAAA ATTTGGAACTATGCCCCCAAAGTTTCATATTGATTTCAGAGGGCTCTTGGTGTTTCCTCAATCCTCATTGTTTCTACTTG AAATTTGAAAATTATTTTGTGGCAACATTAGCAAGATGCGTGAAGAGTAGTGATGAAAAGTGGATGAATACTGCTAGTTA GTTCCTCCTTTTCAGTCAGAGTTGAGATTGGGAATGGGCATGAATGACTACTTGATATTGAATATTGTTCTTGTTGTAAT TCTTGTGTTAATTTAGTACCTGCCTGCTGCTCTCTTAATTCATGCAAGTGCAATTTATCTGTATTATTAAGGATCTCGGC CTGTTTTACTTGGCTGCCGAAGACCTAACACAACCCTCTTTCCTTACTGGGGCTTGGGACCGCCGGACCGGCTATGCAAG CATTGGTGGAGTTTAAGGGAAAACCTTTTGATATAAAGCTCCGCTATGCGCGAGGTCCAGGCAGGATCCACTTTGTGGAT CTAATGTAAGCCGCCTTACCTTGCATTTTTGCAAGAGGTTGATTCCACGGTTCAAACCTGTGACCGCAAAGTCACATGGT AGTAACCTTACTTTGGAAAGCATAGGCGGAGTTATCTGTATTAATTTACTATATTAGTTTTGCTTGTGTAGGAGCAATTT TTTGTAGTTATCTAGAAGATAGGTTTTTCTTCTATGCATAATTTTTCTATAGATGCTCAGTTGCTACGATACTTGCAGGC GGTCATAAAATAATGGAGTCTCATGAAGAAACAGGATGCCAGGCTCCAGAACGTCCCATACTTTGCATTAATAATTGTGG CTTCTTTGGAAGGGCTGCTACTATGAATATGTGTTCCAAATGTTACAAGGACATGCTGTTGAAGCAGGAACAGGACAAAC TTGCAGCAGCGTCGGTTGAAAACATTGTGAACGGAGCCTCCGGCTGCAGCGGGAAACAGGCTCTGACCGTAGATGTACAA GTTGGAAATGCAGAGTTCAAGACAGTCTGCACTGAGATCCGCGAGGATTCATCTTCTGGTGAGAATTCGGAGGTGAAAGC CAAGACAGGTCCCAACAGATGTGCTACTTGTCGGAAGCGTGTTGGATTCACTGGTTTCAGCTGCAAGTGCGGAAATCTCT TTTGTGCAATTCACCGGTATTCTGACAAACACGATTGCCCCTTTGATTATCAGACTCTTGGTCGGGATTCCATAGCGAAA GCCAACCCTGTAATTAAGGCTGATAAGCTTGACAAAATCTAGGGGTGTACTTGACTGAAGGGTATTGTATGAAGCTGAAT GTCTCATCCTTTGTGTGCAAGTTTTCATAAACTTATGGTTGGCACTCATGATAGCAAGCACATGTTTAGGGAAAACCTGC ATTCCTTGTTAGTTATTGTAGGAGTATTTGTGCTGATTTGATGAACATCTTTGGCACATATGCAATTTCATTTCCTGGTT GGTCTGCATTTGTTTTTCATATTGCCATTATGGTATTTACTGCTTAGTATGTATATGCTTTTGCTTTTGTGTTCAGACAT CATTTATAAAAATGTTGATAGGAGCTGTTATTAATATTGAAAAGGGCATAGAACTGAAGGACATATATCCTTTACAGAGT AGAAATACTGAATGAAGTTACTGGAACAGTAGAAATGCAGAATTAAGAAATAACAGCATGAGATGATAAACATCACTCTG AAATTATGTTTTCCTCTCTACTATTCCCCACGTCCTCTTTCATGTTGCCTTTCACTTTTCTCATCATTGAACTAGCTACT CAGATTCTTTTCTGTCAAATGTACATTTGGTTTCTCTGTTTCATACTGTTTCCTCCTTAATCCTAGGCAGGGTTGTCAAA TAGCCGATATAGCGGCGCTATAGCGTAGGGCTGTAAGGGCTCACCGCTTTCCGCTTTTTGCTGCTATTTTCTACTATAAG GACGTATGATAGTGGATTTTTGGCTTTTCGCTATTATTTACGATCGGTGATTAACAACGCTGATCCTAGCAAAGATGATA TTCATCCTGTCTTAAATATGCTAAATCTTTCCCCGGCCAACACTGTCCATATCACTCTCCCTTGTTCTTCTAGTATACAC GTGTTAGAGATCCAGTAAGAGTGTTTGGTTTTCAGTCGGTTTCATCCTAAAAGCACATTGGCATCATTCCAATGCAAGAA AGCCAAGTACCTACGAGGTTGGATTGAGTTTATGTGCTTTCACTTTTTGGAGAATGACACTCTAAATGTGCATTTCGTTT TCTCGTGTGCAAAATATT
CDS sequence (LotjaGi5g1v0146800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGTCTCATGAAGAAACAGGATGCCAGGCTCCAGAACGTCCCATACTTTGCATTAATAATTGTGGCTTCTTTGGAAG GGCTGCTACTATGAATATGTGTTCCAAATGTTACAAGGACATGCTGTTGAAGCAGGAACAGGACAAACTTGCAGCAGCGT CGGTTGAAAACATTGTGAACGGAGCCTCCGGCTGCAGCGGGAAACAGGCTCTGACCGTAGATGTACAAGTTGGAAATGCA GAGTTCAAGACAGTCTGCACTGAGATCCGCGAGGATTCATCTTCTGGTGAGAATTCGGAGGTGAAAGCCAAGACAGGTCC CAACAGATGTGCTACTTGTCGGAAGCGTGTTGGATTCACTGGTTTCAGCTGCAAGTGCGGAAATCTCTTTTGTGCAATTC ACCGGTATTCTGACAAACACGATTGCCCCTTTGATTATCAGACTCTTGGTCGGGATTCCATAGCGAAAGCCAACCCTGTA ATTAAGGCTGATAAGCTTGACAAAATCTAG
Protein sequence (LotjaGi5g1v0146800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MESHEETGCQAPERPILCINNCGFFGRAATMNMCSKCYKDMLLKQEQDKLAAASVENIVNGASGCSGKQALTVDVQVGNA EFKTVCTEIREDSSSGENSEVKAKTGPNRCATCRKRVGFTGFSCKCGNLFCAIHRYSDKHDCPFDYQTLGRDSIAKANPV IKADKLDKI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 168 | 168 | 3.1E-81 | – | |
| PANTHER | 1 | 168 | 168 | 3.1E-81 | – | |
| ProSiteProfiles | 12 | 46 | 35 | 9.847 | ||
| SMART | 15 | 39 | 25 | 9.6E-7 | ||
| Pfam | 16 | 39 | 24 | 5.0E-12 | ||
| SUPERFAMILY | 17 | 53 | 37 | 2.99E-13 | – | |
| Gene3D | 84 | 165 | 82 | 6.9E-27 | ||
| SUPERFAMILY | 95 | 164 | 70 | 8.77E-29 | ||
| ProSiteProfiles | 107 | 150 | 44 | 12.327 | ||
| SMART | 110 | 147 | 38 | 8.3E-16 | ||
| Pfam | 110 | 147 | 38 | 2.2E-9 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Molecular function | Zinc ion binding | Interacting selectively and non-covalently with zinc (Zn) ions. |
Expression pattern of LotjaGi5g1v0146800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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