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Field | Value |
---|---|
Gene ID | LotjaGi5g1v0148200 |
Transcript ID | LotjaGi5g1v0148200.4 |
Related isoforms 3 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | Prohibitin, putative; TAIR: AT4G28510.1 prohibitin 1; Swiss-Prot: sp|O49460|PHB1_ARATH Prohibitin-1, mitochondrial; TrEMBL-Plants: tr|I3SJG9|I3SJG9_LOTJA Uncharacterized protein; Found in the gene: LotjaGi5g1v0148200 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:38240976..38242838) extracted from Lotus japonicus Gifu genome v1.2.
TTCAACAACGTGAATGTCCCAAAGGTTCCTGGCGGTGGAGTCGCTGCTTTGCTTAAAGTCAGCATTATCGGTGGGCTTGT TGTGTATGGGGCTACTAACAGCTTGTACAATGTTGAGGGTGGTCATCGTGCCATTGTCTTCAACCGTATTATTGGTGTCA AAGATAAGGTTATTCAATTTCCCATCACTGTTTAATAGATTAGAGTAGTAACCTTGTTGCATAATATCAATATCTTATAT GCAGGTCTATCCTGAAGGAACACATATCATGATTCCTTGGTTTGAGAGGCCTGTCATTTATGATGTTCGTGCACGACCTC ATTTGGTCGAGAGTACTTCAGGAAGCCGTGATCTCCAAATGGTGAATCTCAACTCTCAAGTTGTTCATACATATTTGCTA AGATCCCTTTAATTTGAACTATTACATTCTACGACTATGATATTCTAGGTTTATGGTGGAATTGTTAATACTTTTGTTAT TAGGATCATGGAAAAAGCTTTACTATGGACACTTCTCTTGACTTTTTATTTTTATTCGATGCAGCATAGACCACGGTGGC TTCACTACATTTTCCATTGATCATAGATCTTTTGTTTTGCTAGGTGAAAATTGGACTTAGGGTCCTTACCCGTCCTCTAC CAGACCAATTGCCTACCGTTTACCGTACTCTGGGTGAGAATTATAATGAAAGGGTCCTACCTTCTATTATACATGAAACT CTCAAAGCTGTTGTTGCACAGTATAATGCCAGTCAGCTCATTACCCAGAGAGAGGTTAGTATTTACAAAGACCCTCTGCT ATCTTTGTTCAATTAGTAACTGGATTAATTTTAACTATGCCTCTTTATTCCTTAGTTGGAATTTGTACCTTTTCAAATCA AGTAGATTCACTTCTGGATAGATATTTACAAGTAAATTACAACCTTATGGTTGAGACTGATTATTTGTTAAATGTGCTAT TGTACAGAATGTTAGTCGAGAAATAAGGAAGATATTGACTGAAAGGGCCTCCCAATTTAGTATTGCTTTGGATGATGTTT CAATCACAAGTTTGACGTTTGGGAGGGAATTTACAGCTGCAATTGAAGCCAAGCAGGTTGCTGCTCAAGAAGCTGAGAGA GCTAAATTTGTTGTAGAAAAAGCTGAACAAGACAAAAGAAGTGCTGTCATTAGAGCTCAGGTAAAATACTCTCCCACCCC TATATTTATGAAATATGATGGTACTTAATATCTATAGAAGTTGCTTGCCGTGCTTCAATGGTTTTGGAATTGGAATTGCT ACTGAACCGTACAAAATAAAATAATCAAAGAAAGTGAAAGGAATAATCATTTTTAAGGTATTTGCTGATTGTCCTGCTTG AGTGGTACACCATGACTGTTAATTATAACTGTGGTTGAACTTCACCAACACTATAGAATTATGAACGAATCTTCTACTCC AGCTTCCTCCCTCTCCCCTCAGCTTTTTTTCTTTTGAATTGTCATGTCCTGTCTGTAACAAGTAAATAGTAATGTATGGA TAAGCTATCCAGAAAGGAAATTAAATTTCTTTAAGCATGACGCTATAGTACTTTTTTCTACAAAAGTAACAAAACAATAT AGATGGCTGCTTTTACAACTCATCATTATTGATATATTCCTTCTTTTTTATTACTTTTTGGCAAACAGGGTGAAGCTAAG AGTGCCCAGTTGATTGGTCAAGCAATTGCTAATAATCCTGCATTTATCACCTTAAGGAGAATTGAAGCTGCTAGGGAAAT TGCTCAAACAATATCAAATTCTGCCAACAAGGTTTACTTGAATTCGAATGATCTCCTATTGAATCTTCAGGGGTTAAAGT TGGAACCTATTGGGAAGAGATAG
CDS sequence (LotjaGi5g1v0148200.4) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCAGGTCTATCCTGAAGGAACACATATCATGATTCCTTGGTTTGAGAGGCCTGTCATTTATGATGTTCGTGCACGACC TCATTTGGTCGAGAGTACTTCAGGAAGCCGTGATCTCCAAATGGTGAAAATTGGACTTAGGGTCCTTACCCGTCCTCTAC CAGACCAATTGCCTACCGTTTACCGTACTCTGGGTGAGAATTATAATGAAAGGGTCCTACCTTCTATTATACATGAAACT CTCAAAGCTGTTGTTGCACAGTATAATGCCAGTCAGCTCATTACCCAGAGAGAGAATGTTAGTCGAGAAATAAGGAAGAT ATTGACTGAAAGGGCCTCCCAATTTAGTATTGCTTTGGATGATGTTTCAATCACAAGTTTGACGTTTGGGAGGGAATTTA CAGCTGCAATTGAAGCCAAGCAGGTTGCTGCTCAAGAAGCTGAGAGAGCTAAATTTGTTGTAGAAAAAGCTGAACAAGAC AAAAGAAGTGCTGTCATTAGAGCTCAGGGTGAAGCTAAGAGTGCCCAGTTGATTGGTCAAGCAATTGCTAATAATCCTGC ATTTATCACCTTAAGGAGAATTGAAGCTGCTAGGGAAATTGCTCAAACAATATCAAATTCTGCCAACAAGGTTTACTTGA ATTCGAATGATCTCCTATTGAATCTTCAGGGGTTAAAGTTGGAACCTATTGGGAAGAGATAG
Protein sequence (LotjaGi5g1v0148200.4) extracted from Lotus japonicus Gifu v1.2 Proteins.
MQVYPEGTHIMIPWFERPVIYDVRARPHLVESTSGSRDLQMVKIGLRVLTRPLPDQLPTVYRTLGENYNERVLPSIIHET LKAVVAQYNASQLITQRENVSREIRKILTERASQFSIALDDVSITSLTFGREFTAAIEAKQVAAQEAERAKFVVEKAEQD KRSAVIRAQGEAKSAQLIGQAIANNPAFITLRRIEAAREIAQTISNSANKVYLNSNDLLLNLQGLKLEPIGKR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 2 | 233 | 232 | 5.4E-153 | – | |
SMART | 2 | 141 | 140 | 5.6E-31 | ||
PANTHER | 2 | 233 | 232 | 5.4E-153 | ||
CDD | 2 | 175 | 174 | 8.46564E-78 | ||
Pfam | 3 | 159 | 157 | 7.9E-23 | ||
SUPERFAMILY | 12 | 148 | 137 | 5.36E-16 | ||
Gene3D | 18 | 143 | 126 | 4.6E-6 | – | |
PRINTS | 24 | 40 | 17 | 3.7E-65 | ||
PRINTS | 42 | 61 | 20 | 3.7E-65 | ||
PRINTS | 65 | 83 | 19 | 3.7E-65 | ||
PRINTS | 88 | 104 | 17 | 3.7E-65 | ||
PRINTS | 111 | 130 | 20 | 3.7E-65 | ||
PRINTS | 136 | 159 | 24 | 3.7E-65 | ||
Coils | 140 | 160 | 21 | - | – | |
PRINTS | 159 | 175 | 17 | 3.7E-65 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. |
Expression pattern of LotjaGi5g1v0148200.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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