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Field | Value |
---|---|
Gene ID | LotjaGi5g1v0149600 |
Transcript ID | LotjaGi5g1v0149600.1 |
Lotus japonicus genome version | Gifu v1.2 |
Description | HIT zinc finger protein; TAIR: AT4G28820.2 HIT-type Zinc finger family protein; Swiss-Prot: sp|Q15649|ZNHI3_HUMAN Zinc finger HIT domain-containing protein 3; TrEMBL-Plants: tr|K7LZG3|K7LZG3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0149600 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:38820043..38826577) extracted from Lotus japonicus Gifu genome v1.2.
CTTTTAAGTGGGGTGGCAAATCTAATGCATGGGGTGGGAAATCTAATTCCCCTCAAATCACTCAAATGTAATTTGCTGAG ATAGGGTTTTAAACCTTAAAGAGGTTGCAAAACCCAAGGTGTATGTTTTTCCTTTCTTTTGGTTGATGCTTCCATCCTCT TCCTCCTTCGATTCTCCAGCGCCAAAAATCAAAGAAGCTCTTGCAAAACCAAAACCGTTTCTACTGCGTGAAACTCAAAA AGGTTTAATTTTTCTCCATCCAATTCAAATTGTTGATTCTATTCTACGTGATTTCGGTTTTATTGAACCCTTGAGCACAT ATGCTTCTGTTTCAGGGAACCCCTTTTGATTTTTTGGGTTCACTGGTTCAGTTCAAGTTCAATGGGTCCTCGACAATGTC AAGTTTGCAACCTAGTTCAGTCCAAATACAAGTGCGCTTCATGTTATTTACCTTAGTATGTAAAACCCAGATGTTCCTTC CTTGATTCTGTTGTTGTTTGATTTCCTGAAAGTTTTTTGTGCTCTCATTTGATGTTGTTTCTTCTTCATGTAGTTGTTCT CTGGTTTGCTTCAAGAAGCACAAAGGTATGATGCCCTTTAGTGCATTTTCTCCTCAAGTTATTTGATTGCTTGATAAGTG TTTGATGTAATGCCTGTGAAAGGTGGATGTGCTGGGTTTCTCAATTAAGGGTTTACACCATAGAGCGATGGTTCTATAAT CGTTGACCTATGTTGAATTGATCAGACTTACTTGTTTTGCAGAATCTCCATGTGTCAAGCCACCGTCTTCAGAAGTCAAA ACATGTAAGAGTTTAATTCACCTCCATAATTACTTCTGTGAAGTAGTCTGCATAATGGTAAATTTTCATTGACATCCCTC CCATGGAGGATATGAGAATTTGTGGGTTTATATAGATGAGCACAAGTCATTTCATCACACCATTTAACATCAGGATTCTC TTGCCTCCTAAGCCCTATCTGCCTTATTGATTTTTCACATGCAGAAGTTAAGGGCATTTTCTTGCTAGAAAGGTCATGCA ATGCTATGCGTAGGGATTAGGGAACTCACTATAGGTCTATACTAAGGAACCCTTATCTTCTGTTTTCAAGTGGCTGATTC CACCACAACCTTAGCTTTCATCAGCAATAATATTGCTTCAAAATTTATGTTTTACATTTGGCTGAAACTTGAGTGACATA TATGCTCCTTGTAGATATCTGCCGTTTTGCAGTTTGCACTTTGTCCTTGTAGTTGTAGTTTTTCTGCCAATTTTCTTAAA AAAAAAAAAAAAACTTGTGATGTGCTATTGGAAGCATGCTGTACTTTGCTGTCAAACTGAAGCAATCAAGTGAATCAACT ATGTTTTAATTTTGATCTAAACTTTAGGTTTTTGGCAACTAGTTTCCATGCAAATAGTTTATTGCGCTTAAGCACTTTTT GTGATCTCATCTGATATTATCTTTCACTATTTTTCATCAGCTGCTGCTTTGGAATCACCTGTAAAAAAGCCAATAGTCAT TGATGAACCAATTGAAGTGTTGCAAAAATTCCAACTGGAGGCTATAGGTATTTTTGTTTGTTTATAAGAATGTAACCATG CCCGAGATGCAGCGTTAAAGTACTGAAATTCCAGTAGTAAAACCCGAGTAATGATATATACACACCTCATTTTTTAAACA CTTCATTTCCACCTCTTTTTATTTCTATCTCTCTCATCTTATCATCTATCACATCTCATATTTTCTCTCTCTTACTTTTT CTTTTCTTCCTATCTCTCTCACCATTCCACCTCTCCACCTCAAAAGAGAAGTGTGAATGAAACATTATCCGTAAAACCCT GATTGGTTAATGTTTGTCTTTTGCAGCCTCTTCCAGTGAGATTCGCGATGCTTTGAATGATCAAGCGCTTCAAGAACTAA TTTGCCGCATTGATTGTTCCCCAAATGCAGAGAATGTAAGACAAATGAAGCTTTCTTATTTCTCACTTTCACTTGTGATA AAATTTCACAATTTTTGCCTAGAAATCACAATCTGATATTTATAATTTACTACTCCTTATTGTACTAGTTTTAATACTCA ATCCGCAAAAACTTGAAGAGATTATTCCTTTAAAATTGGTGTTGCTATGATTAGGAATTTGATAAAGCTATGGCGGAGGA GGCATTTCGCTTGTTCACAGACAAGGTCACCATTTACTGATTCTTATGTGCTTTCTCCGACATTGCATGTGAAGCCTTTA TAGGGTTGTCACATTGGTTAAGCTCAAGTAGTTAAGTACCTTAAACCTTGCTCTTACTTCGTATTTTATTTTTTTCCATT GGATTCCAGATTTTATCAACCATCAACCCCTAACTGCAAGCACACGCCGCGGAAAGCAAAATTTGTGGAAGAAAGTTAAA TATGAAAGGAACAACAGATAGAACCGCTAAAGTCTGCAGGTTTAGTTTAATAGATATATTTATTTTTCTGCTGTACAGCT CAACCCCATTATTCAGCTTTTTATGTGTAAGAAACTCTATCTTCATTGAGCTAGTGTAGTGTATGGGCCAAAGATTGATC TTGATACACTTAGATTTTGATGGTATAATATAATCCTCAAATCTGTGAGTGTTGTCCTTTGCTCTATGGAATTTTAGCTT TACATAAATCCCAATTTAACTGGACGACAAGTCGTGGTGTTTGTGTTGACAATGAGGCATGATAAGTGAACCAACTTTGT TATTCAATTATTGGACATGATGAAAAAGATGAAAAATGAGTAGATTCAATTATTTCGACAGTTAATGGATTTTTTTTAGA GAATTATAAAGCTTTAGTTGATTAGATATTCAACAGTTGAATCATTGACTATGAACTTCCACCTCAACATGATCTATTAA TGCCCTCTTGTGAAGCTGCTGTCATAACCCAATCCCATGTCAGTATATCTCACTTTAACCACTGACCAAGCGTTAGAAGT TATGTTGAAAGCGTTTGATTTGCAAAATCAACTTGTTTCATGAAGTAGCATTAGAAGCTTGTTATGATTTTGTCATTTCT GTAGTTTAATTGATCCAACGTGTAGGAAATTTCTAGGAAGCACTTGTACTTTATAACAGCCATTGTATGAGGCATCCTTT TGCTTTTGATTGGCAATATAAATAAAATTATACTAATTTATACATGGACATTTTACTTACTATATTTTATTTTAACCAAA TTCTGTCGGGTAACTCTTTTAAGTTTATAATTTACTTCATTTACGAACTATATTTGCATGAGTGATGAAAATATAAAATT GTTACTATCTCTTTAAATAATCATCACAAAGAGCAGTAACATGAGCTTGAAGCAATTTTAAGACTGAAAATAAAGCAACT CCCACGATTGAGGTAGACTGTATAAAGAACTATACTTCCCGTAACAAATCATCTATAAATATAGAATGAAGTTTATTTTT GTGGATGGTTGGGGTTTTTGTATTTGTTATCCTCACCCTCCTATACTCAAACTTAGCCTCTTCCTTCTTTATTATTATTA CTATATTTGGACTTCCAAAAAAAAAAGTTTAAGTTGGAAGAAAAGGTACAGAAAGGGGACAAAAATACTATAAGGGTAAC AATAATTTACATGTTAGTCGTGTATAGATTAGCTTGCTATTGAGAACTCCGCAAAAAAGTTAGTTCTCATACATTACACC ACCATGGCAGCAAGGATAAAACTGCTGGAAAATATAACTTGCAGTGTATGCAAGTAAGTTGTTAATGGTAGTCGTCCTTC TTTAGAGCAAGAATACTAAAATGACTTGGAAGCCACTATCGTGTGAGTCTGGAACCAGTGATAAAATGGCAAACAACACC ATCTAATTTGTCAGCGGTTGTTTGTAGATTTCAACAGATCATGTTTCTTCTGAAAAAATTGAAATACAAATAGTTATGTT TACAACATACAGGCCGCGAGATTAACTAGAGTTATCTAACATTTCGGAGTTTTCCGCGTAATATTCTTGAATTGTGATTG TGTTCCTGTTATACTATATATATATATCAGGAGCGCAAATGGCAATTTACCTGATTGATGCTTTTCTGGATTCTCTTGGC CCCTACTGGTACTTGGCTTATTGACATTCAGTTGATTCATTGCCTGATTTCACATATCAATGAAGTTACAAAAATATCAG AGCATGTGGCTTGGAAACCAGCAGAGTTTCCCCGCTGCCTTATCATCTCAAAAATGGACAAGGGTACTAGCTACCATGAT GCAACATACTACCTCAAAGTCAAATAAAAACAAAGACTCAGAAATAAAAGTAAGGACAAAATTACCTGCATTAACTGTAT CTGTACCTGATGGGAACCAAGGTATTGTTGAAAAGGATCTGTGAAGTTTGGGAAGCGTGATTGATCTGGAGGCAGTGTAG CAAATGAGTTAAGCACATGATCAGACTGATTTGGTGGTTGCTGCATTCCGGACGAATCAGGTGCAGCAGGAACATGGGGG ATATTTTGGAAAGGAGGCACAGGGAACCTTGGTCCCAAATGAGCAGCTGCTGCTGCTGTTGCTGGCATAGCTGAATTGGC GGTTAACATGTTTGGAAATGGCATTATTGGCCTGTTCATTCCCATTCCCATTTCCATGCCCATTCCCATTCCCATCCCCA TTCCCATTCCCATTGGTGGCATATACTGTTGCACTCCAGGAAACATCATAGGCACCATTCCACATCCCATGGACATCATC TGCATAAATCAATTTCACCCTCTTCTTGTCACCAATATGCAAATTTCAGGTATGAAGACATGAAGAAAGAATTTACCTGC ACTTGTAACTGCAGTGACTTCAAGTATTCAATTGCTTCATCCAGCATTGAAGCTTTGTCAGACTAACAAGTTCAGAAAAG GAATCAATATTAGAAACAGCTAACAAGGTAGGAAGTAAAATCCAGAATACTCTCAATGAAAACAAAAGAAGTACTGTAAA TTTAGAGAAGTCTCTTGACCTTGTTGCACCGAGGTATCAATTCTTGTAAAGCTCTCATCTTTTCATTGATTCTATCTCGA CGCTTCTGCATACAAATTCAACATGAAGACTCAGAAAAACAGATGAAATTTACGGACTCGTTAATGTTATGTATGTACTG ATTACAGACCCTCTCTGATAGATTATGGATCTCCGCGGCACGAGATTTCTTCGCACCACGGCCTTGTTTTTTAGCTTCCA GAGATTCAAAATCAACATCCTTTTGCAGTGAAAAAAAGACAGATCAGAATACATAGAAGCAGCATATAACAAATTTATAT AGCTTGCAGAAAATGGAAAACAGAAAACACAAATTTGACATTGTTTATTAGACTATTGATCCTCTAATCTTTTCTCACAG AATTTTATTGGTTAGTTTAAAAATTATTTGAGAAAAAAAAAGAGAAACTGAATATTACTCAACTGAATGAACATGCTCAC TCACCTCGCTTTGAAACTCCGATTCCTCCAGTTCCCGGCTCTTCCTCTTCCGGTCCACCACCGGTTCCTTCTGATCCGGT TCAGCACTCCCGCTAGAACCGCCAGGCGATGAAGTCACAGTCATGTCGAACGTTGCCGTCGAAGGCCCAGCTATTCCGGC AGCGCTCATGCTCCCGCGGCCGGATTCCGGCGAGCTCCTGACGGTCTCTGATAGCCTGGAAGCTGCAGCCGCCGTCACGA TTGGAGTCTCGCACGAATCAAGCACAGTCAATTCCCTCGTCGCCGCCGACCGTGGCTCACCTTTCACATCGCTGTGCTTC GAGAAGTACGTGAAGTTCTGAATCCTATTCACCGCTCGCTCCGGCGGCGCACGGGCCGAGGCTTGCACGACACCGCTGTG ATTCTGACCGCCGTTAGCACCCGTCAGCTGGCAGAGGATGTCGGCGCAGAAATCTCGGTGGTCGAAAACAGGATCTTCGT CTATTGAACCGTGAAGCCATGAAGCCGTTTCGTGTTCTTCCATGAACAGGTGTTGGTTGCTGTAGTTTTCCGCTCGAATC CCCCTCGTCGGAAACGGTTGCGGTGGTTTCCTTAACGGTGGCCGTTGGTTTTGGCTCTGCATCACGACCTGGCCGTTTTG CCATAACAGTTCCATGATCTCGTCGTTTTGCATGGAGGGTTTCTTTGAGATGTGTATTGGGTACTCTTCTTCGTTGTGGA TTCGGATTTCGAAATCTGGAACACAGTGATTCATTTTTGCTCTGTTCAGTATCAGTGATAAGAACAAAAATTCAGATTAC AGAAGAGAGGAATTGGAATAGCAAATAGCAACTGAAGATGCAAAAGAGGAGCACTTACTGTTATCAGAGCTAGCTAGTTG AGCATGGTTGTTAATGGTTGCCGGAGCAGTTGTGGTTGTTGCTTGCCTCTCGAGCAGAGCAGAGCAAAGATAAGGAGTCG AGAATAAAGGACGAAAAGGGATTTTGACGGTTTGCATCAATTCACACTCTTATTCAATATTCATTATTTCCAACCACAAG GTTAAGGTAGAGGTGATTAGCTCACATCGTCTTTAACTGTGAAGTTGTGGATTTA
CDS sequence (LotjaGi5g1v0149600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGTCCTCGACAATGTCAAGTTTGCAACCTAGTTCAGTCCAAATACAAGTGCGCTTCATGTTATTTACCTTATTGTTC TCTGGTTTGCTTCAAGAAGCACAAAGAATCTCCATGTGTCAAGCCACCGTCTTCAGAAGTCAAAACATCTGCTGCTTTGG AATCACCTGTAAAAAAGCCAATAGTCATTGATGAACCAATTGAAGTGTTGCAAAAATTCCAACTGGAGGCTATAGCCTCT TCCAGTGAGATTCGCGATGCTTTGAATGATCAAGCGCTTCAAGAACTAATTTGCCGCATTGATTGTTCCCCAAATGCAGA GAATGAATTTGATAAAGCTATGGCGGAGGAGGCATTTCGCTTGTTCACAGACAAGATTTTATCAACCATCAACCCCTAA
Protein sequence (LotjaGi5g1v0149600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGPRQCQVCNLVQSKYKCASCYLPYCSLVCFKKHKESPCVKPPSSEVKTSAALESPVKKPIVIDEPIEVLQKFQLEAIAS SSEIRDALNDQALQELICRIDCSPNAENEFDKAMAEEAFRLFTDKILSTINP
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
Gene3D | 2 | 42 | 41 | 8.3E-7 | – | |
PANTHER | 3 | 131 | 129 | 1.7E-29 | – | |
PANTHER | 3 | 131 | 129 | 1.7E-29 | ||
SUPERFAMILY | 4 | 36 | 33 | 2.62E-8 | – | |
Pfam | 5 | 32 | 28 | 1.5E-8 | ||
ProSiteProfiles | 6 | 39 | 34 | 10.753 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi5g1v0149600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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