Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

LotjaGi5g1v0154900.3

Overview

Field Value
Gene ID LotjaGi5g1v0154900
Transcript ID LotjaGi5g1v0154900.3
Related isoforms 3
Lotus japonicus genome version Gifu v1.2
Description TBC1 domain family member; TAIR: AT4G28550.1 Ypt/Rab-GAP domain of gyp1p superfamily protein; Swiss-Prot: sp|Q9CXF4|TBC15_MOUSE TBC1 domain family member 15; TrEMBL-Plants: tr|K7LHB7|K7LHB7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0154900
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr5:40178614..40183541) extracted from Lotus japonicus Gifu genome v1.2.

ATGATTGGTTGTGGGGGACTGTGCAGAGTTCTTATGAGGAGTTCTGGAACTACTGAATTGAATACTTTCTACCCCATTCG ACCAGAATGCCAAGCTGACGCTCCAACCACTCGATTTAAACCAAGGGTGCAGTTTTGCTTCTCTACTAATGCTACCTTAA TCACACTTGCTATTGTCTATGCTGATTTAGTTTTGTTCCCAGATGAACATCAATTCAATTTATGCTATGTGGAATGATTA TTCGTTTGTGGATGTGATAAGCAACATACTATTGCATGATTGACATTTTTTGCTTATGTTTTGCCTGTGCATACAAGATA GATGTTTTTCATCATTGTTGTTTTATGTGCTTGTGTGAGAAGAGAAAGAGTTTTATTTTCTGCTAAAAAAGTAGGTGCTT GTGTTTTGTCTTCTGATTTATCCACTTCTTTTTCTGTTTCCACAGTCTGGCAAAACTCTAAGTGCAAGAAGATGGCAAGC TTCATTTTCTGAAGATGGTCGCTTGGACATTGCAAAAGTTCTTAGACGAATCCAGCGGGGGGTAACCATTTTTGTTTGCT TGTATATTGTTTTACAGTGCATTACATTGCTGAATTTGTCAATAATAAGTAATTGTAGTCCTCCTTTTGGCTTCCTCTAT GAGTATGTGTGTTTGTATGTTTACAAATCTACTTCATGGTGACCCATTCACTATGGTTTGCAGACTGGCAATATCTGTAA ACTTTACCCCCTTAGAGGATGAGATATTTTTCTCTGTAAAAGAGACACCATATGATAATAGTTTATGATAACCCCTTGAT GCACTATTTTTCTTGCAACATACATCAAAGAAGTTGAAATCATCTTCTTTTTATTATTATTCAAGTTTATGTTCCTTCTG TTTTGTGCTTATTCCTGTATTTATTTCTGTAAATTATGTAGGGTGTCCACCCTTCAATCAAAGGGGAAGTATGGGAGTTC TTGCTCGGTTGCTATGATCCTAACAGCACAGATGAAGAACGTAATGCTCTCAAGCAGCGTAGGAGGTATATTTTCATTTC AATGTATATATGCATAATCAGATTAAGGGGACTAAGAGTACATTAACACTACGCCACAGTTTTTTGTTGTCCTCTGAATT CTGGTAATCGTTTCTTTGGAATATAATCTGTGCTAAATTGCCACATTTCTTAGTGGCTAATATAGGTGGAGAGGTAACAA AACATATAAATAAGTAGACTGTATTAAACTCTCATCTGCCATTATCACCTTCCTCCATTTGTCACTGCCAGCACCACTTT TCTGCTGCTGCCACTACCAGTGCCTCCTATCATTTTTGTCACTTATCTCCATTTTTATGACTTAGACCATTGCCTTATCA GTTATCACTGCCAGCAATGTTGTATAACTGTTGAGTGCAGACCAAATATGTGTCACAATTTTTGAATGTCCATTCTTCTG ATTAAGTTTTTTTCTTTGTTCCTTATAATATGTGAACAATAAGAATAATGCTCTCTACTTTATCTCCCATATAATCTAGA CTATATTAAGATGAGACGGCTTTCTAGGTTTCCTCCTGCAGTCTTATGTAGGTTTTCCTAATAAGCATCTGGTGTAACTT TCTTCAAGGTGTAAATTATAGTATTTTCTCCCTTGTTTTACTTCTTTGTATTGATTAAGAATAGACCAAACAGTTAAGTC TTGTATAAATTTCTTACTCAGGGGGCAATATGATATGTGGAAAGCTGAATGTCAAAAGTTTGTCCCAGTCATAGGTAGTG GAAAATTTATCACCACACCCCTCACTAATGAAGATGGTCAGCCAATAAATAATTCTTTGGTAGGTGTCCGGTCTTCAGAT AAGAAAGTTGTACAGTGGATGCAGTTATTACATCAAATTGGTATGTATATGTTGCTGCTGAAATACTGGATATTTTCTTA TTCTGTTTGGCTTTTGTTTAGTTTGATGAAATATAATCGTTACATAAGTTAATGCGGGTATTTTTCCTTTAAATATTGTT TCTTTGTGGTTTACTAATAATCAATTTGTTTTAACAAGCATCTAAAGTTACAATTGATTATTTTGCATTGTAGGGTTGGA TGTTGTTCGAACAGATCGAACACTTGTCTTTTATGAAAGTGAAGCTAATCAAGCAAAACTTTGGGATCTTCTTGCAGTTT ATGCTTATTTGGACAATGATATTGGTTACGTGCAAGGTGAATGAATGAATCACTACAACTTTCATTTTTTTAATGGTAAC CTGAAAGAGCTTCAAGAAGTTTGAGACATTCTTAAGCAAGGATTTTCTTTGCAGGAATGAATGATATTTGCTCACCTTTG GTTATGCTTATTGAGAATGAAGCAGACTGCTATTGGTGCTTTGAGCGTGCGATGCGAAGGCTGGTATGCTAGACATAGCT GGAGCAATTTTGCTTAAAAGTGCTAGTTCTATATGTTTCTTGTGTGGGTAATTGATTTGTAAAAACTACAATCTAGTGGG CAGTAACTATAAAACTACCGGCATAAAATTTTATTGGACTGTTAATTCTTGTGCTTTAGTTTTTTAGGTTTGAGCATGTC AATATATTGTGATGTTCCCACAGCTTGTTTAATCCTTACATTTTATAGTTTTTGAGACTAGAAACTAAGGGGCACAATTA GTAATTTCTCTAGATTTTTCGCACGTCTGTTATTTTTGCATATAGGTTTCCACTAAATATTGTTGTACAAGAAGTAATTG CTTCTTTCTTATTTTCTTATGGGTACCGTTTGGATGCAGACTAAAGAGCACTTATTTGTGTTTATGTACTAGAAAAAGCA CTAAATAAGCTCCAATAGGTGCTCTTTGCTCTGCAGCCAAAACGTGCTCATTGTTGCACCTGGTCCTTAATAAAATGTAG AAAATCAATATACTACAATTAAACATTATATTAATGCATCTGGTTCGAAGGATAACTTTTAGCATGTTCTATCTACTGCT TTAGTTTTCATCTGCAGACCACAAATTTTTTTTCTCTGACAATTAAATTTTCTAGTCTTTTTTAAATTGCTGCCTTTGTT TCCATAACAGAGAGAGAACTTCAAGTGCGATGCCAGTTCAATGGGGGTGCAATCTCAGTTGGGTACACTCTCACAGATAA TGAAAACAGTTGATCCCAAACTTCACCATCATCTTGGTATGTAAAACTTGTTTGGACAGCTTCTAATATGCTATGAGTAG TAGTTTTGAAGTTCAGATTCTACTATCTTTTTAATTTGAACCAGAATCAGCATCAAATATCACACATTTTCATCACACAG TTTAGGATGGTCGATTATTGTGGAAAATACTTCTTTTTTTGACAATCATATTATGACGTGGCTTTTTAACAGAAAATTGT ATATGTATTTGCACCTACATGATAAAAAAAATTATAGTCTAAAGTAATCAGTACACCTATCCTATGTTTTGATATTTACT CTCTATGTTCCTTAATATGTGTCACTTTAAGGTTTTGACACATGTATTAAGAAATAGTATCAAATGTTCTTGTTTTTATT AAAATCACTACCTAACTTCCTAATATACCATTTATCTCTCTTATTAATTCTGACTTTTCAATTTTCCTATCATCATATTA AGGAACAGAGGGAGTAATAAATAGTGGAGTGGAAATGAATGAGATAAAACAAAATAGAGTAGAATGAAACAAAGCTAAGA TTCCATTGTTTAGATATTTTTATGATTTAATTGTGAAAAAAGTTGGTTCCATTTCATACCTCCAAGTTGGAGAGAAAGAA AAGGTAGTGTATTAAATGAATTGGATGAAACGTATTCCATCATGTTCCATTCCATTACATCTTATTGTAAATAATTCAAA CGATTCTATTCTACTATATTCCATCATTTTCCATCAATCCAAACATAACCTAAGGAAGACCGTGTCAAGTTGATCACCTG AAAGCTAGTGTCAAGTTTGTCTCAACATGCAGAAGCTCTCTTATGTATCAATGTGCAAGAAGCCTACCTTTATCAACTTC ATATCTTCGTATTTTGCAGAGGATTTAGATGGTGGAGAATATCTCTTTGCATTTCGCATGCTGATGGTTCTTTTCCGAAG AGAGTTTTCTTTCGCTGATACATTATATCTTTGGGAGGTAAGGATGAATTTCTCTAATGATATAAAGTTTCACAATAAAT GATTTATTAGAGGTTAAAGAGCTGTTGTGTTATGATTCCTTGACATTTCTTGATGAGATAGAGTATTTCACATTAATAGC TCATTTTAAGACATAATATAGATTGTTTCCAGTTGATGTGGGCAATGGAATACAACCCAAACCTCTTTGCAAGATACGAG GATCCAGATCATGCCAAATCAAAAGGCCCTTCATCTGCACTAAATGACAAGGTTTTGAAGCAATATGGAAAATTCGAGAG AAAAAACTTGAAGACTGGACAGACAGAGGAAACTGGTGCACTGGCTGTTTTTCTTGTTGCAAGTGTTCTTGAGATCAAGA ATAGGCGGATTTTAAGCGAGGCAAAGGGTGTGGACGATGTTGTCCAGGTCTTTCTCAATCTCCTATATTTGTATGGGTGC AATGTATTCATGTTCTTGTATATGTGTGTATCTGACATGAAACTATTTCTTCAGATCTTGGGTGACATAACCTCAAATAT TGATGCTAAGAAAGTGCTTACTGAAGCATTGAAAATTCAGAAAAAATACCTGAGCAAGGTAAGCTTCACTATTATCTGTG ACATTTCCCATCTTAAGTTTTCTTTGTCAGTTTTCGTTGCAAGTAGTAGGGTGTTGCTGAGAGATTTTACTATGCTACTA CATTTCTATCTATGATCTCCTTAATCAAGTAATCATTAGTAGCAGACATTTTTCCTTATGCTGCTTACATTCAATAGATG TGGATTTTTTAAGGAAAATTTTTGTTCTTGCAGACCAAGAAGGCATGA
Download Genomic Sequence

CDS sequence (LotjaGi5g1v0154900.3) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGATTGGTTGTGGGGGACTGTGCAGAGTTCTTATGAGGAGTTCTGGAACTACTGAATTGAATACTTTCTACCCCATTCG ACCAGAATGCCAAGCTGACGCTCCAACCACTCGATTTAAACCAAGGTCTGGCAAAACTCTAAGTGCAAGAAGATGGCAAG CTTCATTTTCTGAAGATGGTCGCTTGGACATTGCAAAAGTTCTTAGACGAATCCAGCGGGGGGGTGTCCACCCTTCAATC AAAGGGGAAGTATGGGAGTTCTTGCTCGGTTGCTATGATCCTAACAGCACAGATGAAGAACGTAATGCTCTCAAGCAGCG TAGGAGGGGGCAATATGATATGTGGAAAGCTGAATGTCAAAAGTTTGTCCCAGTCATAGGTAGTGGAAAATTTATCACCA CACCCCTCACTAATGAAGATGGTCAGCCAATAAATAATTCTTTGGTAGGTGTCCGGTCTTCAGATAAGAAAGTTGTACAG TGGATGCAGTTATTACATCAAATTGGGTTGGATGTTGTTCGAACAGATCGAACACTTGTCTTTTATGAAAGTGAAGCTAA TCAAGCAAAACTTTGGGATCTTCTTGCAGTTTATGCTTATTTGGACAATGATATTGGTTACGTGCAAGGAATGAATGATA TTTGCTCACCTTTGGTTATGCTTATTGAGAATGAAGCAGACTGCTATTGGTGCTTTGAGCGTGCGATGCGAAGGCTGAGA GAGAACTTCAAGTGCGATGCCAGTTCAATGGGGGTGCAATCTCAGTTGGGTACACTCTCACAGATAATGAAAACAGTTGA TCCCAAACTTCACCATCATCTTGAGGATTTAGATGGTGGAGAATATCTCTTTGCATTTCGCATGCTGATGGTTCTTTTCC GAAGAGAGTTTTCTTTCGCTGATACATTATATCTTTGGGAGTTGATGTGGGCAATGGAATACAACCCAAACCTCTTTGCA AGATACGAGGATCCAGATCATGCCAAATCAAAAGGCCCTTCATCTGCACTAAATGACAAGGTTTTGAAGCAATATGGAAA ATTCGAGAGAAAAAACTTGAAGACTGGACAGACAGAGGAAACTGGTGCACTGGCTGTTTTTCTTGTTGCAAGTGTTCTTG AGATCAAGAATAGGCGGATTTTAAGCGAGGCAAAGGGTGTGGACGATGTTGTCCAGATCTTGGGTGACATAACCTCAAAT ATTGATGCTAAGAAAGTGCTTACTGAAGCATTGAAAATTCAGAAAAAATACCTGAGCAAGACCAAGAAGGCATGA
Download CDS Sequence

Protein sequence (LotjaGi5g1v0154900.3) extracted from Lotus japonicus Gifu v1.2 Proteins.

MIGCGGLCRVLMRSSGTTELNTFYPIRPECQADAPTTRFKPRSGKTLSARRWQASFSEDGRLDIAKVLRRIQRGGVHPSI KGEVWEFLLGCYDPNSTDEERNALKQRRRGQYDMWKAECQKFVPVIGSGKFITTPLTNEDGQPINNSLVGVRSSDKKVVQ WMQLLHQIGLDVVRTDRTLVFYESEANQAKLWDLLAVYAYLDNDIGYVQGMNDICSPLVMLIENEADCYWCFERAMRRLR ENFKCDASSMGVQSQLGTLSQIMKTVDPKLHHHLEDLDGGEYLFAFRMLMVLFRREFSFADTLYLWELMWAMEYNPNLFA RYEDPDHAKSKGPSSALNDKVLKQYGKFERKNLKTGQTEETGALAVFLVASVLEIKNRRILSEAKGVDDVVQILGDITSN IDAKKVLTEALKIQKKYLSKTKKA
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR22957
10 421 412 7.0E-186 –
PANTHER
PTHR22957:SF533
10 421 412 7.0E-186 –
SUPERFAMILY
SSF47923
51 273 223 1.7E-49
IPR035969
SMART
SM00164
72 336 265 8.8E-33
IPR000195
ProSiteProfiles
PS50086
75 313 239 35.306
IPR000195
Gene3D
G3DSA:1.10.8.270
137 237 101 5.4E-15 –
Pfam
PF00566
151 311 161 4.9E-35
IPR000195
SUPERFAMILY
SSF47923
251 417 167 1.07E-28
IPR035969

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

Unable to find any GO terms for the transcript with the identifier.

Genome browser

Expression data

Expression pattern

Expression pattern of LotjaGi5g1v0154900.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…