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Field | Value |
---|---|
Gene ID | LotjaGi5g1v0154900 |
Transcript ID | LotjaGi5g1v0154900.4 |
Related isoforms 3 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | TBC1 domain family member; TAIR: AT2G20440.1 Ypt/Rab-GAP domain of gyp1p superfamily protein; Swiss-Prot: sp|Q9CXF4|TBC15_MOUSE TBC1 domain family member 15; TrEMBL-Plants: tr|V7BH61|V7BH61_PHAVU Uncharacterized protein; Found in the gene: LotjaGi5g1v0154900 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:40179266..40183541) extracted from Lotus japonicus Gifu genome v1.2.
ATGATTGGTTGTGGGGGACTGTGCAGAGTTCTTATGAGGAGTTCTGGAACTACTGAATTGAATACTTTCTACCCCATTCG ACCAGAATGCCAAGCTGACGCTCCAACCACTCGATTTAAACCAAGGGTGCAGTTTTGCTTCTCTACTAATGCTACCTTAA TCACACTTGCTATTGTCTATGCTGATTTAGTTTTGTTCCCAGATGAACATCAATTCAATTTATGCTATGTGGAATGATTA TTCGTTTGTGGATGTGATAAGCAACATACTATTGCATGATTGACATTTTTTGCTTATGTTTTGCCTGTGCATACAAGATA GATGTTTTTCATCATTGTTGTTTTATGTGCTTGTGTGAGAAGAGAAAGAGTTTTATTTTCTGCTAAAAAAGTAGGTGCTT GTGTTTTGTCTTCTGATTTATCCACTTCTTTTTCTGTTTCCACAGTCTGGCAAAACTCTAAGTGCAAGAAGATGGCAAGC TTCATTTTCTGAAGATGGTCGCTTGGACATTGCAAAAGTTCTTAGACGAATCCAGCGGGGGGTAACCATTTTTGTTTGCT TGTATATTGTTTTACAGTGCATTACATTGCTGAATTTGTCAATAATAAGTAATTGTAGTCCTCCTTTTGGCTTCCTCTAT GAGTATGTGTGTTTGTATGTTTACAAATCTACTTCATGGTGACCCATTCACTATGGTTTGCAGACTGGCAATATCTGTAA ACTTTACCCCCTTAGAGGATGAGATATTTTTCTCTGTAAAAGAGACACCATATGATAATAGTTTATGATAACCCCTTGAT GCACTATTTTTCTTGCAACATACATCAAAGAAGTTGAAATCATCTTCTTTTTATTATTATTCAAGTTTATGTTCCTTCTG TTTTGTGCTTATTCCTGTATTTATTTCTGTAAATTATGTAGGGTGTCCACCCTTCAATCAAAGGGGAAGTATGGGAGTTC TTGCTCGGTTGCTATGATCCTAACAGCACAGATGAAGAACGTAATGCTCTCAAGCAGCGTAGGAGGTATATTTTCATTTC AATGTATATATGCATAATCAGATTAAGGGGACTAAGAGTACATTAACACTACGCCACAGTTTTTTGTTGTCCTCTGAATT CTGGTAATCGTTTCTTTGGAATATAATCTGTGCTAAATTGCCACATTTCTTAGTGGCTAATATAGGTGGAGAGGTAACAA AACATATAAATAAGTAGACTGTATTAAACTCTCATCTGCCATTATCACCTTCCTCCATTTGTCACTGCCAGCACCACTTT TCTGCTGCTGCCACTACCAGTGCCTCCTATCATTTTTGTCACTTATCTCCATTTTTATGACTTAGACCATTGCCTTATCA GTTATCACTGCCAGCAATGTTGTATAACTGTTGAGTGCAGACCAAATATGTGTCACAATTTTTGAATGTCCATTCTTCTG ATTAAGTTTTTTTCTTTGTTCCTTATAATATGTGAACAATAAGAATAATGCTCTCTACTTTATCTCCCATATAATCTAGA CTATATTAAGATGAGACGGCTTTCTAGGTTTCCTCCTGCAGTCTTATGTAGGTTTTCCTAATAAGCATCTGGTGTAACTT TCTTCAAGGTGTAAATTATAGTATTTTCTCCCTTGTTTTACTTCTTTGTATTGATTAAGAATAGACCAAACAGTTAAGTC TTGTATAAATTTCTTACTCAGGGGGCAATATGATATGTGGAAAGCTGAATGTCAAAAGTTTGTCCCAGTCATAGGTAGTG GAAAATTTATCACCACACCCCTCACTAATGAAGATGGTCAGCCAATAAATAATTCTTTGGTAGGTGTCCGGTCTTCAGAT AAGAAAGTTGTACAGTGGATGCAGTTATTACATCAAATTGGTATGTATATGTTGCTGCTGAAATACTGGATATTTTCTTA TTCTGTTTGGCTTTTGTTTAGTTTGATGAAATATAATCGTTACATAAGTTAATGCGGGTATTTTTCCTTTAAATATTGTT TCTTTGTGGTTTACTAATAATCAATTTGTTTTAACAAGCATCTAAAGTTACAATTGATTATTTTGCATTGTAGGGTTGGA TGTTGTTCGAACAGATCGAACACTTGTCTTTTATGAAAGTGAAGCTAATCAAGCAAAACTTTGGGATCTTCTTGCAGTTT ATGCTTATTTGGACAATGATATTGGTTACGTGCAAGGTGAATGAATGAATCACTACAACTTTCATTTTTTTAATGGTAAC CTGAAAGAGCTTCAAGAAGTTTGAGACATTCTTAAGCAAGGATTTTCTTTGCAGGAATGAATGATATTTGCTCACCTTTG GTTATGCTTATTGAGAATGAAGCAGACTGCTATTGGTGCTTTGAGCGTGCGATGCGAAGGCTGGTATGCTAGACATAGCT GGAGCAATTTTGCTTAAAAGTGCTAGTTCTATATGTTTCTTGTGTGGGTAATTGATTTGTAAAAACTACAATCTAGTGGG CAGTAACTATAAAACTACCGGCATAAAATTTTATTGGACTGTTAATTCTTGTGCTTTAGTTTTTTAGGTTTGAGCATGTC AATATATTGTGATGTTCCCACAGCTTGTTTAATCCTTACATTTTATAGTTTTTGAGACTAGAAACTAAGGGGCACAATTA GTAATTTCTCTAGATTTTTCGCACGTCTGTTATTTTTGCATATAGGTTTCCACTAAATATTGTTGTACAAGAAGTAATTG CTTCTTTCTTATTTTCTTATGGGTACCGTTTGGATGCAGACTAAAGAGCACTTATTTGTGTTTATGTACTAGAAAAAGCA CTAAATAAGCTCCAATAGGTGCTCTTTGCTCTGCAGCCAAAACGTGCTCATTGTTGCACCTGGTCCTTAATAAAATGTAG AAAATCAATATACTACAATTAAACATTATATTAATGCATCTGGTTCGAAGGATAACTTTTAGCATGTTCTATCTACTGCT TTAGTTTTCATCTGCAGACCACAAATTTTTTTTCTCTGACAATTAAATTTTCTAGTCTTTTTTAAATTGCTGCCTTTGTT TCCATAACAGAGAGAGAACTTCAAGTGCGATGCCAGTTCAATGGGGGTGCAATCTCAGTTGGGTACACTCTCACAGATAA TGAAAACAGTTGATCCCAAACTTCACCATCATCTTGGTATGTAAAACTTGTTTGGACAGCTTCTAATATGCTATGAGTAG TAGTTTTGAAGTTCAGATTCTACTATCTTTTTAATTTGAACCAGAATCAGCATCAAATATCACACATTTTCATCACACAG TTTAGGATGGTCGATTATTGTGGAAAATACTTCTTTTTTTGACAATCATATTATGACGTGGCTTTTTAACAGAAAATTGT ATATGTATTTGCACCTACATGATAAAAAAAATTATAGTCTAAAGTAATCAGTACACCTATCCTATGTTTTGATATTTACT CTCTATGTTCCTTAATATGTGTCACTTTAAGGTTTTGACACATGTATTAAGAAATAGTATCAAATGTTCTTGTTTTTATT AAAATCACTACCTAACTTCCTAATATACCATTTATCTCTCTTATTAATTCTGACTTTTCAATTTTCCTATCATCATATTA AGGAACAGAGGGAGTAATAAATAGTGGAGTGGAAATGAATGAGATAAAACAAAATAGAGTAGAATGAAACAAAGCTAAGA TTCCATTGTTTAGATATTTTTATGATTTAATTGTGAAAAAAGTTGGTTCCATTTCATACCTCCAAGTTGGAGAGAAAGAA AAGGTAGTGTATTAAATGAATTGGATGAAACGTATTCCATCATGTTCCATTCCATTACATCTTATTGTAAATAATTCAAA CGATTCTATTCTACTATATTCCATCATTTTCCATCAATCCAAACATAACCTAAGGAAGACCGTGTCAAGTTGATCACCTG AAAGCTAGTGTCAAGTTTGTCTCAACATGCAGAAGCTCTCTTATGTATCAATGTGCAAGAAGCCTACCTTTATCAACTTC ATATCTTCGTATTTTGCAGAGGATTTAGATGGTGGAGAATATCTCTTTGCATTTCGCATGCTGATGGTTCTTTTCCGAAG AGAGTTTTCTTTCGCTGATACATTATATCTTTGGGAGGTAAGGATGAATTTCTCTAATGATATAAAGTTTCACAATAAAT GATTTATTAGAGGTTAAAGAGCTGTTGTGTTATGATTCCTTGACATTTCTTGATGAGATAGAGTATTTCACATTAATAGC TCATTTTAAGACATAATATAGATTGTTTCCAGTTGA
CDS sequence (LotjaGi5g1v0154900.4) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATTGGTTGTGGGGGACTGTGCAGAGTTCTTATGAGGAGTTCTGGAACTACTGAATTGAATACTTTCTACCCCATTCG ACCAGAATGCCAAGCTGACGCTCCAACCACTCGATTTAAACCAAGGTCTGGCAAAACTCTAAGTGCAAGAAGATGGCAAG CTTCATTTTCTGAAGATGGTCGCTTGGACATTGCAAAAGTTCTTAGACGAATCCAGCGGGGGGGTGTCCACCCTTCAATC AAAGGGGAAGTATGGGAGTTCTTGCTCGGTTGCTATGATCCTAACAGCACAGATGAAGAACGTAATGCTCTCAAGCAGCG TAGGAGGGGGCAATATGATATGTGGAAAGCTGAATGTCAAAAGTTTGTCCCAGTCATAGGTAGTGGAAAATTTATCACCA CACCCCTCACTAATGAAGATGGTCAGCCAATAAATAATTCTTTGGTAGGTGTCCGGTCTTCAGATAAGAAAGTTGTACAG TGGATGCAGTTATTACATCAAATTGGGTTGGATGTTGTTCGAACAGATCGAACACTTGTCTTTTATGAAAGTGAAGCTAA TCAAGCAAAACTTTGGGATCTTCTTGCAGTTTATGCTTATTTGGACAATGATATTGGTTACGTGCAAGGAATGAATGATA TTTGCTCACCTTTGGTTATGCTTATTGAGAATGAAGCAGACTGCTATTGGTGCTTTGAGCGTGCGATGCGAAGGCTGAGA GAGAACTTCAAGTGCGATGCCAGTTCAATGGGGGTGCAATCTCAGTTGGGTACACTCTCACAGATAATGAAAACAGTTGA TCCCAAACTTCACCATCATCTTGAGGATTTAGATGGTGGAGAATATCTCTTTGCATTTCGCATGCTGATGGTTCTTTTCC GAAGAGAGTTTTCTTTCGCTGATACATTATATCTTTGGGAGATTGTTTCCAGTTGA
Protein sequence (LotjaGi5g1v0154900.4) extracted from Lotus japonicus Gifu v1.2 Proteins.
MIGCGGLCRVLMRSSGTTELNTFYPIRPECQADAPTTRFKPRSGKTLSARRWQASFSEDGRLDIAKVLRRIQRGGVHPSI KGEVWEFLLGCYDPNSTDEERNALKQRRRGQYDMWKAECQKFVPVIGSGKFITTPLTNEDGQPINNSLVGVRSSDKKVVQ WMQLLHQIGLDVVRTDRTLVFYESEANQAKLWDLLAVYAYLDNDIGYVQGMNDICSPLVMLIENEADCYWCFERAMRRLR ENFKCDASSMGVQSQLGTLSQIMKTVDPKLHHHLEDLDGGEYLFAFRMLMVLFRREFSFADTLYLWEIVSS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 10 | 309 | 300 | 3.2E-157 | – | |
PANTHER | 10 | 309 | 300 | 3.2E-157 | – | |
SUPERFAMILY | 51 | 273 | 223 | 4.45E-50 | ||
SMART | 72 | 311 | 240 | 3.6E-23 | ||
ProSiteProfiles | 75 | 311 | 237 | 34.865 | ||
Gene3D | 137 | 237 | 101 | 3.1E-15 | – | |
Pfam | 150 | 308 | 159 | 1.3E-34 | ||
Gene3D | 249 | 311 | 63 | 5.8E-16 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi5g1v0154900.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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