Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0155900 |
| Transcript ID | LotjaGi5g1v0155900.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | FBD-associated F-box protein; TAIR: AT4G26340.1 F-box/RNI-like/FBD-like domains-containing protein; Swiss-Prot: sp|Q8H1R7|FDL27_ARATH F-box/FBD/LRR-repeat protein At4g26340; TrEMBL-Plants: tr|K7LAQ1|K7LAQ1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0155900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:40399604..40401254) extracted from Lotus japonicus Gifu genome v1.2.
ATTTTTTGTTGTTAGGAGGAAAATTAAAACAGAAAGAAAGGTAATTCCACTGCTCATAGCTCCGATTGAAACGCTGTGCC ACGCTCTCCGTTGTACGTAACACGGCTGCAAGAAGGAAACCAGGGGGTGTGATGTATTGTTTTGCTGGAATCCTAAATAA AATTATCTGCTTTATTTGATCGTGTTCCAATGGCGGATATGATTAGCATGTTGCCAGATGAAGTTCTGTGTCACATCCTC TCGTTTCTCCCAACTGAAGAAGTTGTTACAACAATGGTTCTCTCAAAGAGATGGAAACCACTCTGGCCTTTAGTCTCTAC CCTAGACTTTTACGACCATAGATATCTCGATTTCAAGGAATTTAAATCGCACTTTTCCTTCATCAGATTCGTGTACGCTA CCATGTTCTCACGAGGTTTGAATCAACCCATCAAAAACTTTACCCTCATTGTAAGGGAACAATGTCTAGATACCGATGTC AAGGTATGGTTAAACGCTGCAATACAACAACCTCAACTTGAGAATCTCAATGTCGATCTTTCCCTTTCCATATTGCCTTG CTCTATTCTCAGCAGCGCATCCCTTGTTGTTTTCAAGTTGCATAATGTAACTTTTGATGTCTTTTCTTCTGTTTACCTTC CCTCACTCAAAACACTGCATTTGGACAATGCTTGGATTACAAGGCTTCGATATTTGATGGAGCTTCTTTATGGGTGTCCA GTTCTTGAAGATTTGATACTAAATGACATAGATTTTAATGATTGTTCATTTGAGGGGAAGGTTAAGACTTTATCCAAGTT GGTCAGAGCAGATGTTATTTTTGATAGTTATCGTCATTTAATTCCTGTGAAAGCTTTTTCTAATGTAGAGTTTCTGCGCA TAGACGAGGTTTGTATATGGAAAACTAGAACATGTTTTGTTTTGTTTCGTTTGCTATTGGTTTTCTTTATAGGAAAAGTT TCTAATACTTCTGATAATTTTTCTGCAGTGCGATGTGGAGATCCCTGTGTTTTCCAATTTAATTCATTTGGAGCTTATCT TTGGAGACTTTATTAAATGGAGTTTGGCCCTTGATATGCTCAATCATTGCCCTAAGCTTCAGACTCTTGTCTTTGAACTA AATTTTGGTCATGATGATGATGATGATGAGGTCTGGCCATACCAACGATTTGTTCCCGAATGCTTTTCTTCACATCTTAG GAAGTGCTTTCTTAAATATTTTAAAGGACTGGAATGCCAGATGAGATTTGCAAGGTATGTTATGCAAAACTCAGCATCAT TACGTACCATGACAATTCATTGTAAGGGCCAAAATCGTGAGAAAGAGCTTGAAATGATAGAAGAATTGGCCTCATACCCT AGGAGTTCTTCAAACTGTAAACTCTTATTTGAGTGATTGATATGCTTCTTAGTTACCAGAAATTATTCCTAAAATGACTG CTTATGTCCTTAGTTTTACATTTAATATATCTGCTGGTTTTGGTGCTTTTGATGATACGAACTTTGTGTGTCGTTGTACT ATTTCTGCTGTTATTGTTTCGGAAATTGCTCATCTAATGCACCAACTTTTGCTGAAGATTATCAGATTTTGTAACCTTCT AAAGCTAATGTCTAGAACAAGAAGAAAATATCTTAAAGGTTTAAAATGAAG
CDS sequence (LotjaGi5g1v0155900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCGGATATGATTAGCATGTTGCCAGATGAAGTTCTGTGTCACATCCTCTCGTTTCTCCCAACTGAAGAAGTTGTTAC AACAATGGTTCTCTCAAAGAGATGGAAACCACTCTGGCCTTTAGTCTCTACCCTAGACTTTTACGACCATAGATATCTCG ATTTCAAGGAATTTAAATCGCACTTTTCCTTCATCAGATTCGTGTACGCTACCATGTTCTCACGAGGTTTGAATCAACCC ATCAAAAACTTTACCCTCATTGTAAGGGAACAATGTCTAGATACCGATGTCAAGGTATGGTTAAACGCTGCAATACAACA ACCTCAACTTGAGAATCTCAATGTCGATCTTTCCCTTTCCATATTGCCTTGCTCTATTCTCAGCAGCGCATCCCTTGTTG TTTTCAAGTTGCATAATGTAACTTTTGATGTCTTTTCTTCTGTTTACCTTCCCTCACTCAAAACACTGCATTTGGACAAT GCTTGGATTACAAGGCTTCGATATTTGATGGAGCTTCTTTATGGGTGTCCAGTTCTTGAAGATTTGATACTAAATGACAT AGATTTTAATGATTGTTCATTTGAGGGGAAGGTTAAGACTTTATCCAAGTTGGTCAGAGCAGATGTTATTTTTGATAGTT ATCGTCATTTAATTCCTGTGAAAGCTTTTTCTAATGTAGAGTTTCTGCGCATAGACGAGTGCGATGTGGAGATCCCTGTG TTTTCCAATTTAATTCATTTGGAGCTTATCTTTGGAGACTTTATTAAATGGAGTTTGGCCCTTGATATGCTCAATCATTG CCCTAAGCTTCAGACTCTTGTCTTTGAACTAAATTTTGGTCATGATGATGATGATGATGAGGTCTGGCCATACCAACGAT TTGTTCCCGAATGCTTTTCTTCACATCTTAGGAAGTGCTTTCTTAAATATTTTAAAGGACTGGAATGCCAGATGAGATTT GCAAGGTATGTTATGCAAAACTCAGCATCATTACGTACCATGACAATTCATTGTAAGGGCCAAAATCGTGAGAAAGAGCT TGAAATGATAGAAGAATTGGCCTCATACCCTAGGAGTTCTTCAAACTGTAAACTCTTATTTGAGTGA
Protein sequence (LotjaGi5g1v0155900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MADMISMLPDEVLCHILSFLPTEEVVTTMVLSKRWKPLWPLVSTLDFYDHRYLDFKEFKSHFSFIRFVYATMFSRGLNQP IKNFTLIVREQCLDTDVKVWLNAAIQQPQLENLNVDLSLSILPCSILSSASLVVFKLHNVTFDVFSSVYLPSLKTLHLDN AWITRLRYLMELLYGCPVLEDLILNDIDFNDCSFEGKVKTLSKLVRADVIFDSYRHLIPVKAFSNVEFLRIDECDVEIPV FSNLIHLELIFGDFIKWSLALDMLNHCPKLQTLVFELNFGHDDDDDEVWPYQRFVPECFSSHLRKCFLKYFKGLECQMRF ARYVMQNSASLRTMTIHCKGQNREKELEMIEELASYPRSSSNCKLLFE
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 2 | 365 | 364 | 3.9E-80 | – | |
| PANTHER | 2 | 365 | 364 | 3.9E-80 | – | |
| ProSiteProfiles | 2 | 55 | 54 | 10.875 | ||
| SUPERFAMILY | 3 | 58 | 56 | 4.97E-12 | ||
| Gene3D | 4 | 278 | 275 | 3.6E-23 | ||
| Pfam | 5 | 36 | 32 | 1.9E-7 | ||
| SUPERFAMILY | 108 | 282 | 175 | 1.19E-8 | – | |
| Pfam | 293 | 336 | 44 | 6.8E-13 | ||
| SMART | 297 | 368 | 72 | 8.2E-10 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi5g1v0155900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…