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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0158700 |
| Transcript ID | LotjaGi5g1v0158700.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | RNA-binding protein-like; TAIR: AT2G33410.1 RNA-binding (RRM/RBD/RNP motifs) family protein; Swiss-Prot: sp|Q8W034|RNP1_ARATH Heterogeneous nuclear ribonucleoprotein 1; TrEMBL-Plants: tr|I1NI06|I1NI06_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0158700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:40819665..40824730) extracted from Lotus japonicus Gifu genome v1.2.
CTGAGCCGTCAAAAGAGCATACTACATTTTTGCTGACAGAACAAAACCGCAACACTCTCATTTGTTTCCCTTCTCTCTCA CAGCCACAACACCACCAAACCCTTTTCCCTCTCTTCTTCTTCTTCTTCGTCTTCGCTTCACCCTTCCCCAAATCCCCACC TCTCTGCTCTGCAATCACCAATTCGTATCGAGTGTGTGTGAGAGAGAGCGAGATTGGTTCAGAGAGAGAAAGGGAAATGG ATTCGGATCAGGGCAAGCTTTTCATCGGTGGGATTTCATGGGACACGAATGAGGACAAGCTCAAAGAGCATTTCAGCAAC TATGGTGATGTTTTGAACACTTCTGTCATGAGGGAGAAGAACACTGGAAAACCTAGAGGATTTGGGTTCGTCGTGTTTTC AGATCCTGCTGTTCTCGATGCTGTTCTTGAAGACAAGCACGTTATCGATGGGAGAACGGTTATTCCTCTTCCATTTTCTC CTTTTATTTCGCTGGAATTTTGAATTTTTTTGTTGTTGTTTTCACTTCATTTTTCGCTACCCCTTTTGGCCCTGGGTTAG GGTTTTATTTGGTGTGTTCTTTTTTTTTTGATAAAGATTTGTTTTTGATAATTTTAGTGTGGTTGTAGTTGCTGCTGTTT CTGAATTTCAGGTGGGTTTCCCCCAATTTTTTGGGGAACGAAGTGAATCGTGGCTTCTGTTTTGTTGAATGAATGATGGA TTATTGTTTAGGGTTTTAATCATTTCCATGGTTTATTCTGAGAATTGGTTAATGTGTTGTTATATGCTCTGTTTGCTTTG TGGGATTTTTGTTTTTCAATTTTAAGTGGTGCTTCTCTGGATCGTTTGTTATCATTGGTACACACTTATTTTAGGGTTAC TGATTTTTGTAACGCGGGTCTAATCATTTTGTTCATGGCTTAGTTTGCTGGACTTAAACTAATATATGCTTTACCAAAAA CACTGGCAAAAGATGACGGATTTGAGTGTTGTGTTTGTGGACAAATTTGTTACAAAACAAATAATAGTCATGCTACTAGC TTTGATTAACTGTTGAGCGTTGTGAGTGGATCAATGTGCAATTGAATTGAATAGATGCATCTTCCCCTCTTTGTTTGCTG TGAAAACTAAAAGTTGCTTTATTACTCAAGGAAAAGATTATCTGTTATTTTTGTTGTTGTAGGCACATCATCTGCCAATT TGGAATGTATTAATGCTCAATAGTGTCCCTAGACACTTGTTAAGGATTCAAGAATAGAAAATATATAATAAAAGTTTAAG TATCTAATTTTGTTATGTGTTGCTCTTTTCATGTCTTCTCAATAACTGTCTCATAGTATTGGTTTTGCATTCCCATTTGG AATGAATATCATTTTAATGTTTTCATCTGAGGGATACTGCACTTGTAACATATTAAGGCCACTATACTTTTATATGTTTA TAAAGATCATACTATCATAGTAATGGTGTTATTTAGTATTTGAACATCTTCATCGAAATCTTGAAATATAAAGTAGCAGA ACTCTTTTGAAGTTCCAGCATGTGATCCATTTCATTCAACAACATGCTTAAGCTTGAGTGCAAAGATATGCTTGTATTTA GGGATTATGATTTATTTTTTCGTGGATAAGGATGCCTTTGCTTTAATGCAGTGTGAGTTGTGTTTCTTATGTATTTTTCC TCATGTTTTTTTTGGTTTAAATGGTTATGGTTTTTGGATATAGATATCTGAAATATGTCTTAATGTCTTAGCCTAAAATC TTAGTTTTGATAATGTCAATAATTGTGGGATATAGGTATTACATTGTTATCTTGTGTTTGCTTGTCTTCCCATTATCAAT TATAAGCTTACCTAGCAACTTATATTTTAAACTTTTATTAATCAGGTTGATGCCAAGAGGGCATTCTCAAGAGAGGATCA ACAGATTTCTGTCACTTCCAGAGCTGGAAATCCTAATTCTGGTATGAATTCTGGAAATGGTGGTAATGTTAGGACCAAAA AGATATTTGTTGGAGGGTTGCCCCCGACCCTGACTGAAGAAAAATTCCGTCAGTACTTTGAGTCTTATGGACATGTAACT GATGTAGTAGTGATGTATGATCAGAATACTGGGCGACCACGAGGATTTGGCTTTATTTCATTTGATAATGAGGATGCGGT TGATAGGGTTTTGCACAAGTCATTTCATGATTTAAATGGTAAACAGGTAGAGGTAAAGCGTGCACTTCCCAAGGATGCTA ATCCTGGTGCAAGTGGCCGTATGATGGGTGGTGCTGGAGGTGGTGGTGCTGGAATTGGTGGGTATCAAGGGTATGGGGCT TCTGGTGGCAGCCAAAATGCATATGATGGTCGTATGGATTCTAGTAGGTATATGCAGCCTCAAAGTGCTGCCGGTGGATT CCCACCTTATGGTTCTTCTGCCTATAGTGCTCCTGGATATGGGTATGGTTCAGCTAACAATGGTATTGGTTATGGTGCAT ATGGAAGTTATGGTGGCGCCACTGCTGGGTATGGTGGACCTGCTGCTGCAACTTATGGGAACCCAAATGTCCCTAATGCT GCTTATGCTGGTGCTCCACCAGGTGGCCCCAGGAGTTCATGGCCTGCTCAGGCTGCCTCTGGTTATGGGTCTATGGGCTA TGGGAATACTGCTCCTTGGGGCGCTCCAACTGGTGGTGCTGGATCTGGTGGTGGTGGCCCTGGTTCAGCAACTGCAGGTC AATCCCCTAGTGGAGCTACTGGATATGGGAATCAAGCTTATGGATATGGTGGGTACGGTGGGTATGGGGGAAGTGATAGT TCTTATGGAAATCCAGGTGTGTATGGTGCTGTTGGAGGGCGCACTGGGAGTACCCCAAATAGTAATGCCAGTGGTCCTGG TGGGAGTGAGCTACAAGGTAGTGGTGGCAGTGGTAGTTATATGGGTAGTGGCTATGGGGATGCAAATGGAAATTCAGGTT ATGGAAATGCAGCTTGGAGATCTGAACAAGCTCAAGCAACTGGAAATTATGGGACTCCTCAGGGAAATGGCTCCCATGGT GGGCAAGTTGGTTATGGTGGAGGCTATGGCGGTGCTCAGTCTCGACAAGCCCAACAACAGTAATTTTGGTAGTTATATCT CTTGCTGGATCTTGAACTAACCGGAGGATCCCTGCCTTTAATCTTATATCATGAGCTCATAATGAATTCTTCCAGCAAAG GAACGACTCTATGTTCGATGTCAATGCACAATGGGACTGGTTGGGTTCCTTGAATCCCACTAGTTTGCAGTTTCTGCTTT CCTAGTTTATAATAAGTAGTATGGTTGAAGAGATACTAGATGATACTTTCTATTTAGTATTCATTTCTGCGTGTAGTTTT AAATTGCGTGCTTTTGGTTTTAGTTGATCTGGAGTTCTCAGTTCTTGTAGCATTTCAGCTATAGTATTATACTTAACCTA TATGATGGTTTGATGCTATTATTTATCTTTGTTGTCTTTTTCATGCTGTTTTCATTTTTTCCCTTCTACTCTCTTGTGAT TACAGTTTGGCAGTAGGAAATATTTTTGCTTAGACAAAGATATAGTCAAGGTAGTTACTGATAGCAGTGGACACTTGGGT TGATCACTTCGTAATGGGTAGCGATAATGGTAGTAATAGTAAAAACTTTGAGGATGGCATAATCATTTTCCCCCTGTATT TGCACTTGTGTTGTACAGGAGGAGAAGAAGTGCACGAGTATTGAAGTGGAGCCAAGTGTCCACTCATGGCTATGGGATGA ACTTTGTTCAGTGGTATTGTGTTTCTCTGGGCCAACGCATCATCAAATTTGGAGATTCCTGGCTTTTCAACTGATAAAAT CTCATAACCTTCAATCTGGTTTGTGGTGGCTGACAGAAGTTGTGAGGGGTGGTATGCGGCACGTTGACTAAATCTGTTGG CTGTGCTTCATTAGAATTTTTGCCTAATTTATGTGTCCAGTTGATTGATACACTAGATTTTGGCATTTGTTTGAAAATTC ATTCTCTGAATAATTCCATGTCCAAAACATTTTCTGTGATTTGGTAAGATTTTTATAAGTAGAAACTTCTCATCATATCT TCATTCCTAGCACTTATGGTTGTTCTTCAGTTTTTGCTTTTGTGTCACCCCTAAAGATGTTGTATTAGTATTTTTTTTGG CAAGTATTTTCTGTTTGACCCCTCAAGGGTTTAAATTGGCCTTTGCTTTATGTGGCAACTGGCCCCACTTGATATTGTTG CAGTCATTATCTGGTGGTAATTTGAAGGTCTAGTATGTGATTGGATGGATGGTTTTGGAGTGAAAGGAAAGGTAGAATAA ATTTTCATTTTTGAATTAAAAGAATTTCAGTGTTACACAGAAGGGATCAGAACATTACATTTTATGCTAATTAACATTTT CTTTCCTTCATTTTATACTTATTCTTGCTTCACTTATCTTCAAAATTCCTCTTTTCCAGGTATATCCTAAGCCAATTATG TGTTATTATCTGTTGCTACTTTGGCATAGGAAAAAGCTAATATATACTACTATTGATTTGAAGATGCTAATTAGTTATTT GCTTGTTGGGCTTATATATGCTCAACAAGTTTTGTTCCTATATTTACTATTTGAGAATTTTGTTTGCCTTTGATATTTCA TGTTTTGTGGCTCTGCGTATTTCATTAGCTCTATGTGTAGTTTGTCAAAAAAAAAACCTCTGTAGTTCATGTTTGATTCT GCGTCCTGCACTTCTTGCACTTGTAGAATCACGTGTATCATGACCAAAAGCTACAGGGCTATGCGTCTACTTTACATGGT TATAGGCTGTACAAGATCTTGATGTTATTTTGCAAACAAGCAGAGGAAATTTTTCAACCAATTTTTTTCTTGGAAAATAT TATAATTTACTCTATATTTGTCAAATGCATCCTCGTTTTACTTACAATTGACATAAGTTAATTCCGCTATGCTGGTGTTG TTTGTGTATTTTGCTTGCGATAAAAATTGATGAAGATTTAGTCGACCGTGATTGGCTTTGATAGTGATATGTTAGCAATG CTACTCGTTTGGGAGAAAGAACATGC
CDS sequence (LotjaGi5g1v0158700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGATTCGGATCAGGGCAAGCTTTTCATCGGTGGGATTTCATGGGACACGAATGAGGACAAGCTCAAAGAGCATTTCAG CAACTATGGTGATGTTTTGAACACTTCTGTCATGAGGGAGAAGAACACTGGAAAACCTAGAGGATTTGGGTTCGTCGTGT TTTCAGATCCTGCTGTTCTCGATGCTGTTCTTGAAGACAAGCACGTTATCGATGGGAGAACGGTTGATGCCAAGAGGGCA TTCTCAAGAGAGGATCAACAGATTTCTGTCACTTCCAGAGCTGGAAATCCTAATTCTGGTATGAATTCTGGAAATGGTGG TAATGTTAGGACCAAAAAGATATTTGTTGGAGGGTTGCCCCCGACCCTGACTGAAGAAAAATTCCGTCAGTACTTTGAGT CTTATGGACATGTAACTGATGTAGTAGTGATGTATGATCAGAATACTGGGCGACCACGAGGATTTGGCTTTATTTCATTT GATAATGAGGATGCGGTTGATAGGGTTTTGCACAAGTCATTTCATGATTTAAATGGTAAACAGGTAGAGGTAAAGCGTGC ACTTCCCAAGGATGCTAATCCTGGTGCAAGTGGCCGTATGATGGGTGGTGCTGGAGGTGGTGGTGCTGGAATTGGTGGGT ATCAAGGGTATGGGGCTTCTGGTGGCAGCCAAAATGCATATGATGGTCGTATGGATTCTAGTAGGTATATGCAGCCTCAA AGTGCTGCCGGTGGATTCCCACCTTATGGTTCTTCTGCCTATAGTGCTCCTGGATATGGGTATGGTTCAGCTAACAATGG TATTGGTTATGGTGCATATGGAAGTTATGGTGGCGCCACTGCTGGGTATGGTGGACCTGCTGCTGCAACTTATGGGAACC CAAATGTCCCTAATGCTGCTTATGCTGGTGCTCCACCAGGTGGCCCCAGGAGTTCATGGCCTGCTCAGGCTGCCTCTGGT TATGGGTCTATGGGCTATGGGAATACTGCTCCTTGGGGCGCTCCAACTGGTGGTGCTGGATCTGGTGGTGGTGGCCCTGG TTCAGCAACTGCAGGTCAATCCCCTAGTGGAGCTACTGGATATGGGAATCAAGCTTATGGATATGGTGGGTACGGTGGGT ATGGGGGAAGTGATAGTTCTTATGGAAATCCAGGTGTGTATGGTGCTGTTGGAGGGCGCACTGGGAGTACCCCAAATAGT AATGCCAGTGGTCCTGGTGGGAGTGAGCTACAAGGTAGTGGTGGCAGTGGTAGTTATATGGGTAGTGGCTATGGGGATGC AAATGGAAATTCAGGTTATGGAAATGCAGCTTGGAGATCTGAACAAGCTCAAGCAACTGGAAATTATGGGACTCCTCAGG GAAATGGCTCCCATGGTGGGCAAGTTGGTTATGGTGGAGGCTATGGCGGTGCTCAGTCTCGACAAGCCCAACAACAGTAA
Protein sequence (LotjaGi5g1v0158700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDSDQGKLFIGGISWDTNEDKLKEHFSNYGDVLNTSVMREKNTGKPRGFGFVVFSDPAVLDAVLEDKHVIDGRTVDAKRA FSREDQQISVTSRAGNPNSGMNSGNGGNVRTKKIFVGGLPPTLTEEKFRQYFESYGHVTDVVVMYDQNTGRPRGFGFISF DNEDAVDRVLHKSFHDLNGKQVEVKRALPKDANPGASGRMMGGAGGGGAGIGGYQGYGASGGSQNAYDGRMDSSRYMQPQ SAAGGFPPYGSSAYSAPGYGYGSANNGIGYGAYGSYGGATAGYGGPAAATYGNPNVPNAAYAGAPPGGPRSSWPAQAASG YGSMGYGNTAPWGAPTGGAGSGGGGPGSATAGQSPSGATGYGNQAYGYGGYGGYGGSDSSYGNPGVYGAVGGRTGSTPNS NASGPGGSELQGSGGSGSYMGSGYGDANGNSGYGNAAWRSEQAQATGNYGTPQGNGSHGGQVGYGGGYGGAQSRQAQQQ
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 1 | 93 | 93 | 2.0E-24 | ||
| SUPERFAMILY | 3 | 109 | 107 | 2.55E-26 | ||
| ProSiteProfiles | 6 | 82 | 77 | 16.62 | ||
| SMART | 7 | 78 | 72 | 5.1E-22 | ||
| Pfam | 8 | 75 | 68 | 9.8E-16 | ||
| CDD | 8 | 78 | 71 | 1.99973E-35 | – | |
| PANTHER | 12 | 298 | 287 | 2.6E-138 | – | |
| PANTHER | 12 | 298 | 287 | 2.6E-138 | – | |
| MobiDBLite | 84 | 109 | 26 | - | – | |
| Gene3D | 107 | 187 | 81 | 2.9E-27 | ||
| CDD | 110 | 189 | 80 | 2.84858E-45 | ||
| SUPERFAMILY | 110 | 218 | 109 | 1.75E-28 | ||
| ProSiteProfiles | 112 | 189 | 78 | 19.212 | ||
| SMART | 113 | 185 | 73 | 1.9E-26 | ||
| Pfam | 114 | 180 | 67 | 2.7E-17 | ||
| MobiDBLite | 337 | 356 | 20 | - | – | |
| MobiDBLite | 392 | 479 | 88 | - | – | |
| MobiDBLite | 393 | 458 | 66 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. | ||
| Molecular function | RNA binding | Interacting selectively and non-covalently with an RNA molecule or a portion thereof. |
Expression pattern of LotjaGi5g1v0158700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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