Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0158800 |
| Transcript ID | LotjaGi5g1v0158800.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | F-box/LRR protein; TAIR: AT4G05460.1 RNI-like superfamily protein; Swiss-Prot: sp|Q9M0U9|SKI19_ARATH F-box protein SKIP19; TrEMBL-Plants: tr|A0A072UZ00|A0A072UZ00_MEDTR F-box/LRR protein; Found in the gene: LotjaGi5g1v0158800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:40841129..40846001) extracted from Lotus japonicus Gifu genome v1.2.
TCCTCATCCTCATCCTCATCCTCATCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCTCTCTCTCTCTCTCT CTCTCTCTCTCTCTCTCTCTATAACTTTCCCTCATCTTCCTGATCTCTCCCTATCGCCTTTTGTCCAGAAACCCTAAATG TAACCTTGAACTTTGCATTGCTTCGGTGGATACAACATTCATAGCGATCTTTAATTACATTTTCTCTATCATCGCAATCG GCGAATTCATCTTCAACGCAATTAGGTACGAGTTTTGTTTCCTTTTTTCCATTTCTGTTTTCTTCATTTTCATTATTCTC ATGTTTGATTTCATTTAGATAATTTGTAAGGTATAATTTTTACATCACACTCTCTGTCTCTCTCTCTCTCTCTAACTTTT CCTCATCTCCTTGATCTCTCCCTATCGCCCTTTGTCCAGAAACCCTAAATGTAACCCTGAACTTTGCATTGCTTCAGTGG ATACAACATTCTTAGCGATCTTTAATTACATTTTCTCTATCATCGCAATCAGCGACTTCATCTTCAACGCAATCAGGTAC GAGTTTTGTTTCCTTTTTTCCATTTCTGTTTTTTCATTTTCATTATTCTCATGTTTGATTTCATTTAGATAATATGTAAG GTTGAATTTTTACATCATTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCCCCTCATCTTCTTGATCTCTCCCTATCGCCC TTTGTCCAGAAACCCTAAAAGTAACCCTATACTTTGCATTGCTTCGGTGGATACAACATTCGTAGAGATATTTAATTACA TCTTCTTTATCATCACAATCGGCGACTTCATCTTCAACGCTATCAGGTACGAGTTTTGTTTCCTTTTTTCCATTTCTGTT TTTTTAATTTTCATTATTATCATGTTTGATTTCATTTAGATAATATGTAAAGTATAATTTACATCACTGCTAGTAGCCTA GTCAATGCTGCAATTAATGCTCTTCGAATAACTTCCAAGAATCTCATTAGGTAAATTGGCGGTGCATTTATACATAAGTT TTTTTTTTTTTTGTTTTAAATGTTTTTGATTCATTGGACTTTTTTCAATTAAAACCTATGTTAATGTTTTGCTAAAAGTA ATCTTTGATATAGTGGAGACTAGGATGGACCTTTTTTTATTTTGCTCCACAAGTGCCCCAAGGTGCATTTTGTACCAAAT AAATCTTCTCTCTCGCTCCCACTCTACTGCTTCTAACATGCTCCTCGCTCCTTCATCTTCCTCACCCCAATTCATCCACC ATCCAGATCTAACAAACCTTCTTCAAATTCAACAATAACTCATCACCACAAAATCGACACTCTCAACCTCCACCATCCAT ATTTACGCAACCTCCTTTAAATCTATCAATAACCCATCACCTCACCTTCTCTTCCTCCTCCTTCGACCTCCATTAGTGAA AACCTCCCCCGCTTCACCCACCATGATAACCACCATTTCTCAACCCTCACTTGAAGCCTTCAACCATCACCTAATCATCA TCCTACCCAAACCTGCGGCTGTACCCAAACCAAAAGCATCCTTCAACAAGATTTTCACCTAAAAACATAGAAGCAATCAG ATAAACAAGAAACCTTTCTCTTTTCAGGAGGGGAAACCTTCACACAAAGGGGAGAAAAGAGAATGTTAAAACCCTTGTTG TCCATACTCTCTAATCTTACTCTTGTGCTTGAAGCATATATGACTTGAAGAGGAATTGGTTGCGGTTTGAAGATTGTCGT TATGGGTTGAAAAAGCGGTGTGGAGGTTGTGGCGTGGTGGTGATATTTGGGAGTGAGAGAAATGAGCTTGTGATGGTATC ACGATAACCTTTTTCGTGCAAATTCAATCCTAAATTTTAAGTAATGCGTAGACACTTAATTCTAATTAAACAAGAAAACA AGTATATTTAAGAAGTAATCTAAACTATCTAAAATAAGATCACGATATGATAAGACACTCTAAGATACTACAAGGTATCT TCATATTCTAAACTCCCCTCAAATTTAAACTAACTTAGCTTTAAACTTCTTACAAATATAACCTTTAGAAAAAAGTAAAA ATTAATCGGTCTGCATTGCCTTTGTCATTGCTACCATTGTCATTTCCATACCCATAGAGAATAGGAGAAACCAAAGAGAA AAGAATAGAACTCATTGCCATTGTGAACCACCAATCTGTGTCTCCATCAAGAACAACACAATTCAAAGACACCACACCTC TATTACCAACACAAAGACAATCAACCTTTTTTTAAGCTTCAGGACTCCATAACAAATATTATAGAGTATATGGTGGGGGT TTTTCAAAGTTGAAGTTGTCGGAACCCATGGGATGAGACACCACCTTATGCCATTATCAAGGAAATGCCACCTCTGCAAT GAACCTTGCGTCGTCGTTGGGAAAAGGGTGTGGCCTTACGCCGTCATGAGAAGGAGGGTTCGACACAAACATTGCGCTGT CGTGAGTAGAGGAAGTGAGAGAAAGAAGAAAGAAGGACCATGGCCTTGTGTTGAGCACGAGTGTCATCTAGCACCACTAA ACTAACACCATGGTTCTAGGAAGCCATTGTTAGGGAAACAAAAAGAGTTGAAGAGACAGATAGAAAAAGACATTTAGTTT TTAGGAGAGAAGTGATCGAACCTACACTCCAAAGTTGGATCCATGAAATTGGTTTCAAGATCAAACCTACTCTGGGTATC ATGTTGAGTGAAGCAATGCGAAGAAAAGAGAGAGAAGATAAGTGGAATTGTGCTAGGGTTTACATTGTGCATAATTGATT GATTAAAAGATAAAATTCTTACACATATTTATAGTAATGGGTAGACTCCTAATCATAATTAAATAGGGAAACAAATCAAT TTAAGCAATAATTTAACTACCTAGAATAAAATCAAGATATGAGAAGATAGTCTATGATATTATTAATATATTAGAAGATA TCTTTTTCATATTCTAACAAGTACTCATCAATTAAAGCATATGTTTTATCATAATACAATGATAAGAACGTTACTCATCA AGTGCTACTATTATTGTTTATAAATAGAGTTATCAATCATTTTGTTTGCAGGATGGCTTCTTGTTCAAGAGTAGTGAAAG ATGCATATGAGGAGAGCACTGAGAAGCCAAACTGGCTTGAACTTCCTAAAGAAGTGACTACAAATATATTTCACAAACTT GGTGCGTTTGAAGTTTTGACAAGTGCGCGCCAAGTGTGCTCTCTATGGTGGAACATCTCCAAGGACCCTCTCATGTGGCG CACCGTTGACTTGACCAAACCCCCTTACTATCCACAGTCAACATTAGTGAATCTTTGCTGCTATGCCATTGAACAAAGTT GTGGTCATTTAGAAGATATTAGTATTGAATATTTTGCCACCGACGAAATCCTGAAATGCATCGCTAACAGGTAAGGCTTG TCATCATTTTCATTTGGCTCGCATCCATTTTTTATGTGTAGGATGAATTATGATAGTTTTATCGATTCTCATTTTTAAAG ATTGAAATAGTAGAGACACAACTCATACACCTCATTTTTAAAAACTTAAAAAGTAGAGACACAATTCATACACCTCTCAA TGATCATTTATCTTTTTTATCTTAATTTCTCACTTTTCTTATTTGGGATGTTTATACACTTCATGAAGCGTGTACTAAAC ATTGCCTATTTTTAAATACCAAAAAATATTTTTTTAATCTAGCACATGTATCATCTACAAAGGACAATCTTGTTTGAGTC TAAACTTTCACATCTGGTGTGGCTAGCTCTTTTAAATTTCTAATGGAATCCCAATAAGCGATTTTTCACACTGAGAGAGA TAACTTCCAAAAATAATACATTTTATTTTCTATGTCTGCTACCATACTTTGCTTTATTTTTTAGTGATTGGAAAATGATC ATTTATAGTTTTATTTATTTATTTTGAAAAATATAGCATGTATAAATTTTAGTGACAACTCAATCATTATTATAATTATG CATTTGGTATCATAGTTTAGTTTAATCATGTTAGCATTTATTTGTTTTTTTTTTCTTTTTTCAAATTTTACAGCGGAAGT CACCTACGACGAATGAGGCTTATAAAATGTTGGGCAGTTTCAAATAAAGGATTGCGAGAGGCTGTAATCAAGCTTCCATT GTTGGAGGAATTTGAAATTTCATTTAATAACGTATCTAATGATACTTTTGCAGTTATGGGCCAATGTTGCCCACTATTGA AAGTGTTGAAATTTAATATGTGCCCATACAAAGGCTTCAAGTGTAATGGTGATGCATTTGCTATTGCAAGAAACATGCCT AACCTACGTCATCTCCAACTTATGGGAAACTGGCTCACAAATGATGGCTTGGTTTCCATTCTTGACGGTTGTCTTTATCT TGAATCTCTGAATCTCAAGGCTTGTTTGAATATTGACTTGAGTGGAAGTTTGGGGGAAAGGTGTTATAAGCAAATCAGAG AGTTACATTCTTCAAAAGACTTAAGTGGCGATGATTATAATGAGGATGCACATTTTGAATTTGACTATGATGTTGAAGAA GCATATCATGATATGGTCTGTTTCAATATTTAGCTTTGTTGTTAAGTGTTGATTATATGTTCAAATCAGAAGTGTGGATC ACCTAGTACCGATCCATAAGACATTTTAGGTCTTTCTTGAAAGAGACTTGATATTTCTTTTGAATGACATAATATTTTCA TTTTTGTAATAGTTAACTTAAGTTGAGATATAATTTCATACTTATGAGTAGCTAGATGTTTTATTATGATGATTTAAGTT TTATTTTTCTTTTGAATCTCATTGGCTTCAATGTGGTATGTTACTGTTTGAAGTTTCTTTTTTTTATTCTTTC
CDS sequence (LotjaGi5g1v0158800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTTCTTGTTCAAGAGTAGTGAAAGATGCATATGAGGAGAGCACTGAGAAGCCAAACTGGCTTGAACTTCCTAAAGA AGTGACTACAAATATATTTCACAAACTTGGTGCGTTTGAAGTTTTGACAAGTGCGCGCCAAGTGTGCTCTCTATGGTGGA ACATCTCCAAGGACCCTCTCATGTGGCGCACCGTTGACTTGACCAAACCCCCTTACTATCCACAGTCAACATTAGTGAAT CTTTGCTGCTATGCCATTGAACAAAGTTGTGGTCATTTAGAAGATATTAGTATTGAATATTTTGCCACCGACGAAATCCT GAAATGCATCGCTAACAGCGGAAGTCACCTACGACGAATGAGGCTTATAAAATGTTGGGCAGTTTCAAATAAAGGATTGC GAGAGGCTGTAATCAAGCTTCCATTGTTGGAGGAATTTGAAATTTCATTTAATAACGTATCTAATGATACTTTTGCAGTT ATGGGCCAATGTTGCCCACTATTGAAAGTGTTGAAATTTAATATGTGCCCATACAAAGGCTTCAAGTGTAATGGTGATGC ATTTGCTATTGCAAGAAACATGCCTAACCTACGTCATCTCCAACTTATGGGAAACTGGCTCACAAATGATGGCTTGGTTT CCATTCTTGACGGTTGTCTTTATCTTGAATCTCTGAATCTCAAGGCTTGTTTGAATATTGACTTGAGTGGAAGTTTGGGG GAAAGGTGTTATAAGCAAATCAGAGAGTTACATTCTTCAAAAGACTTAAGTGGCGATGATTATAATGAGGATGCACATTT TGAATTTGACTATGATGTTGAAGAAGCATATCATGATATGGTCTGTTTCAATATTTAG
Protein sequence (LotjaGi5g1v0158800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MASCSRVVKDAYEESTEKPNWLELPKEVTTNIFHKLGAFEVLTSARQVCSLWWNISKDPLMWRTVDLTKPPYYPQSTLVN LCCYAIEQSCGHLEDISIEYFATDEILKCIANSGSHLRRMRLIKCWAVSNKGLREAVIKLPLLEEFEISFNNVSNDTFAV MGQCCPLLKVLKFNMCPYKGFKCNGDAFAIARNMPNLRHLQLMGNWLTNDGLVSILDGCLYLESLNLKACLNIDLSGSLG ERCYKQIRELHSSKDLSGDDYNEDAHFEFDYDVEEAYHDMVCFNI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 9 | 249 | 241 | 3.8E-85 | – | |
| PANTHER | 9 | 249 | 241 | 3.8E-85 | – | |
| SUPERFAMILY | 9 | 75 | 67 | 2.22E-11 | ||
| Gene3D | 13 | 64 | 52 | 5.1E-10 | – | |
| ProSiteProfiles | 18 | 65 | 48 | 9.842 | ||
| Pfam | 21 | 67 | 47 | 2.0E-8 | ||
| Gene3D | 65 | 260 | 196 | 1.4E-23 | ||
| SUPERFAMILY | 81 | 234 | 154 | 1.63E-19 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi5g1v0158800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…