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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0165700 |
| Transcript ID | LotjaGi5g1v0165700.3 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | F-box protein family; TAIR: AT2G27310.1 F-box family protein; Swiss-Prot: sp|Q9XIN8|FB119_ARATH F-box protein At2g27310; TrEMBL-Plants: tr|I3SZS8|I3SZS8_LOTJA Uncharacterized protein; Found in the gene: LotjaGi5g1v0165700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:42316532..42317661) extracted from Lotus japonicus Gifu genome v1.2.
ATGTCTGTTGCACCAGTTGAGAGTATCGGCTCGTTGAATAGTGATATCTTCTACGACATATTAAGACGTCTTGATGGCCC TGAGTTGGCTAGCGTAGCTTGCACTTGTGCAGCATTTTGTTCCATCTCCAAAGAGGAAAGTTTATGGGAAAATGTATGTT CATCTGTGTGGCCTTCAACCAATAGGGAGGATGTCAAAACTTTGATATCCTCTATCGGTGGATTCAGAAAATTTTATGCA GATTGTTTCCCTCTTATTGTGAACAAGGAGGTTGGCCAGTATCAGTGGAATAACTTTCTTGATTACCCTGATGATTGGAC CGAAGCTGAATATTATGGGGACACAAATGAATCTGAAAGCATCTCTCCTTTAGATTTTGTCTCTATTATAGATATCAGGT TTAAGGAGAAACCTATCTGCTCCAAAGTCCTATGGGGAATCCCAAATGCAAATGGCTCTGATGGGTGGTTTCACAACTGT CCTTTTCGGATCGATCTTCTTAATTATGCAGATGGAGATGGCAACAGTGATGGTGTTGTGACCCTTTCGGTAACTGACGG TCTGCCGCCAATCACATCCATGGAACGGGAAAGAAAAGACGGGAAGCTATGGCTCGAGCTTCGTGGCGGTCTCATGCTTA GTTGGATTATTGTAAACACGAAAATGAAGCAAGCTGCGAATCTTGCTAGCTGGAGTCCTCTTGATGGGCTAAGACATTGG CCAACCGATAAGGATTTCATCCTTCGTTTCGGATCCGTTCTTCCAGCCAAGAACATTCTTCCTTCTCAAGTTGTGCAGTG TATCCTCATTATGAAGTTTACAGTGGTTCACACTGAAGAAGAGGGGGTTCAAACAAGTCTTAAACTAACAGAGCTGAGCA TGAAGTTGGAAGACATGGAAGGTGCTCACGTCAATGGAAGGAACAGTTTGCTTATTCTGAAGGAAGCACTTAGCTGCAGA AGGAGCAAAAATTATAGTGAGGTTCTTGAATCTTGTCATATGTACTCAAAAGTGGCAAATGAGTTAAAAGAGGTGAAGAT GAGAAATGAAAGTTGGTTGGATACGCTTTGTATTTTAACTGGCATTACTGCTTTTATGACATTCTGGTACTGCGTTTTGT GAAATGGTAG
CDS sequence (LotjaGi5g1v0165700.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCTGTTGCACCAGTTGAGAGTATCGGCTCGTTGAATAGTGATATCTTCTACGACATATTAAGACGTCTTGATGGCCC TGAGTTGGCTAGCGTAGCTTGCACTTGTGCAGCATTTTGTTCCATCTCCAAAGAGGAAAGTTTATGGGAAAATGTATGTT CATCTGTGTGGCCTTCAACCAATAGGGAGGATGTCAAAACTTTGATATCCTCTATCGGTGGATTCAGAAAATTTTATGCA GATTGTTTCCCTCTTATTGTGAACAAGGAGGTTGGCCAGTATCAGTGGAATAACTTTCTTGATTACCCTGATGATTGGAC CGAAGCTGAATATTATGGGGACACAAATGAATCTGAAAGCATCTCTCCTTTAGATTTTGTCTCTATTATAGATATCAGGT TTAAGGAGAAACCTATCTGCTCCAAAGTCCTATGGGGAATCCCAAATGCAAATGGCTCTGATGGGTGGTTTCACAACTGT CCTTTTCGGATCGATCTTCTTAATTATGCAGATGGAGATGGCAACAGTGATGGTGTTGTGACCCTTTCGGTAACTGACGG TCTGCCGCCAATCACATCCATGGAACGGGAAAGAAAAGACGGGAAGCTATGGCTCGAGCTTCGTGGCGGTCTCATGCTTA GTTGGATTATTGTAAACACGAAAATGAAGCAAGCTGCGAATCTTGCTAGCTGGAGTCCTCTTGATGGGCTAAGACATTGG CCAACCGATAAGGATTTCATCCTTCGTTTCGGATCCGTTCTTCCAGCCAAGAACATTCTTCCTTCTCAAGTTGTGCAGTG TATCCTCATTATGAAGTTTACAGTGGTTCACACTGAAGAAGAGGGGGTTCAAACAAGTCTTAAACTAACAGAGCTGAGCA TGAAGTTGGAAGACATGGAAGGTGCTCACGTCAATGGAAGGAACAGTTTGCTTATTCTGAAGGAAGCACTTAGCTGCAGA AGGAGCAAAAATTATAGTGAGGTTCTTGAATCTTGTCATATGTACTCAAAAGTGGCAAATGAGTTAAAAGAGGTGAAGAT GAGAAATGAAAGTTGGTTGGATACGCTTTGTATTTTAACTGGCATTACTGCTTTTATGACATTCTGGTACTGCGTTTTGT GA
Protein sequence (LotjaGi5g1v0165700.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSVAPVESIGSLNSDIFYDILRRLDGPELASVACTCAAFCSISKEESLWENVCSSVWPSTNREDVKTLISSIGGFRKFYA DCFPLIVNKEVGQYQWNNFLDYPDDWTEAEYYGDTNESESISPLDFVSIIDIRFKEKPICSKVLWGIPNANGSDGWFHNC PFRIDLLNYADGDGNSDGVVTLSVTDGLPPITSMERERKDGKLWLELRGGLMLSWIIVNTKMKQAANLASWSPLDGLRHW PTDKDFILRFGSVLPAKNILPSQVVQCILIMKFTVVHTEEEGVQTSLKLTELSMKLEDMEGAHVNGRNSLLILKEALSCR RSKNYSEVLESCHMYSKVANELKEVKMRNESWLDTLCILTGITAFMTFWYCVL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 369 | 369 | 4.0E-210 | – | |
| Phobius | 1 | 351 | 351 | - | – | |
| PANTHER | 1 | 369 | 369 | 4.0E-210 | – | |
| Gene3D | 4 | 106 | 103 | 4.9E-7 | – | |
| ProSiteProfiles | 6 | 52 | 47 | 8.782 | ||
| SUPERFAMILY | 7 | 79 | 73 | 5.89E-11 | ||
| Phobius | 352 | 372 | 21 | - | – | |
| Phobius | 373 | 373 | 1 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi5g1v0165700.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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