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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0166800 |
| Transcript ID | LotjaGi5g1v0166800.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Ribonuclease H; TAIR: AT5G42905.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein; Swiss-Prot: sp|P0C2F6|RNHX1_ARATH Putative ribonuclease H protein At1g65750; TrEMBL-Plants: tr|A0A061FPX3|A0A061FPX3_THECC Uncharacterized protein; Found in the gene: LotjaGi5g1v0166800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:42586378..42591023) extracted from Lotus japonicus Gifu genome v1.2.
AAACACGAGGACGCAAATTCAATCCTCAGAAAACTTCCGAGAAGGATAGAGGGGTGATTACAGATATTGGTGTCAGGTTA TCCTCAGAAGGTTACGAATCAAGGGCAAGGAAAGCATGGGAAGTGGGGAAAGCTCTTGGATTACAGTTTGATGGGCCAGA TAGCAAAGCCGTGGAAGGTTTGGAGGCAGAGTTAAGGCAAATTCGCCTGGGATAACCCATGGAATGCAAGTGGGTGTCAT GGAATGTGAGAGGGTTAGGTGGGGCTGAAAAAAGAAGGTCAGTAAAGGAGGCTCTGAGAAGATCCAACGCCCATGTTATC CTCTTACAAGAGACTAAATTGGATGCTACTAGGTAAAAATTCATTCAGTGTTTTGCAAATTCCCTCAATTACGAGTGGGA GGTCATACATGCTAGAGACTCAGCAGGTGAATTGATTACTATGTGGAAACCACACAATTTTACTGTACTCGAAATAATTA AAGAGGAAAGGTTCTTGGGCTTGTTAGTTAACTTCAGCAGCAGTAACCAAAATTGCCTCATAGGGAATTCATATGGGCCA AATGTAGATGCTGAAAAACAGGCTTTCTACGAAACACTGGGAAGGGTTTTGAGCAATAGAAACTGTTGTGTTGTTACGGG TGGTGATTTTAATGGAACTTTGAATTTAGGAGAGAGGAAAGGTGTTAGAGATGAGGTTGATCTATTGCTGGGCAGTTTTG TGTCAAGCTCTCATCTGCTTGACTTACCATTGCAAAACTCGGAGTTTACTGATATAGCTCTCGATGTGGGGGACTTTGGA GCAGGATTGATCGATGGCTAATCAACGAAGAGGCAATGCTTCTATTCCAAGGTTGTTACCAGAGTGCTGAAAACTGGGGA TTATCCGACCATAGGCCTGTGATTCTATCCTTGGGGCTGTCTAACTTTGGTCCCAAACCATTTCGATTTTTTAATAGTTG GCTGCTGGATAAGGAGTTTAACACCCTTGTGGGTGAATGGTGGTCTTCTGCAACAGTGGAAAGTTGGTCCGGTTATGTTT TGCAGCATCAATTGAATAACCTTAAGACCAAAATTAAGGGATGGAAAGGCTATTCTATGAGGGGCAGTGGTGAAGCAGTA AAGGCTTTGGAAGCGGACTTACAGAATGTCATAAGTAGGTTAGAACTGGAAGGCCCATCAATTGAGCTGCGTATTCAGAG GATTGAAATTCTTGGGGCTATTTGGGATAATTTCAGAAGGGGGGAGAGCATTTGGAGACAAAAGTCCAGGCTTAGATGGC TCAAGGACGGTGACAAAAACACGTCTTTCTTCCACTCTATTTGTAGAGCTCGCCAAAGTCGCAAAAGCATTAATTCCCTA GTGGTTCATGGACAGCTAGTTGTGGATCCCACAACAATCAAACTAGCAATCCCTGATCACTTCAAATCTTTCTTTGCCAA AGAAGTCAAGTCCAGGCCAACGCTTTGATGTAGTAACCTTCCTAAACTCAGCCGGTCAGAGGCAACTGAGTTGGAAGCTC CTTTCTCTGAGGAGGAAATCTGGGAGGTTATCAAGTCTTGTGATGGGAATCGTGCCCCGGGACCCGATGGTTTTAACCTT GCTTTCTTTAAGCATTTCTGGCCTGTTATTAAAGAATATGTGATCAGATTTTTTGCATAATTTCATGAAACTGGGAGATT GGTAAAGGGTCTAAATGCGGCATTCATATGTCTCATCCCAAAACAGAATCAGCTTGAATCAGTGGTAGATTATAGGCCCA TCAGCTTAATAAGCAGCGCCTATAAACTCATTTCGAAAGTATTGGCGGCACGTCTGAAACTTGTTATGCCAAAACTTCTC ACCCCCAACCAATTCGCCTTCACCCATGGTCGCCAAATAGCAAACTGCATTGTAATAGAAAATGAGGTAGTCGATTTTAT GAAGAAAAAATCCGAAGGGGGCTTCTTGCTAAAGATCGATTTCGCCAAGGCATACGACAATATCGACTGGGGTTCTTACT TGATGTGCTAGTGGCTATGAAGTTTGGGTATAAGTGGATTAAATGGATGCGATCATGCATATCCACTGCTTCTTTGGCTA TCTTGGTAAACGGATCACCGACTGATTTTTTTAGTATAGAAAAAGGTCTCCGTCAAGGAGATCCTTTATCTCCATTTCTA TTCAACCTATGTGCTAATGGGCTATCCTGCATGCTTAATCAACTGTTGGAGGATAATAGATTCAGCGGGGTTAGGATCGG ACCGGAATTGCGATTGAATCACCTTCAATTCACAGATGACACATTGTTGTTTTGTGAGAACGATTTCGATCAGGTGGATC TCTTATGCAATACCTTGCTGGCTTTTTTATTTGCATCAGGTCTGAAAATTAATATGTCCAAATCCACTCTTATCGGGTGT AATATTCCTGACTCAATTGTTGAAGCCGTGGCTGAGTTCTATGGGTGGAGCTCGGGGAAGCTTCCGGTTCAGTATTTGGG GGCACCTCTAGAAGGAAATCCAAAGCGGAAAATTTTCTGGGAACCAATGCTGGATAAATTAAGGAGGAAAAGTCGCTCTT TGAACTCTAAATACACCTCCTTGAGCGGCAGATTGGTTTTAGCCAAAGCGTCACAGTGTTCGATCCCTACTTACCTAATG TCTATTTTCAAGGCTCCAGTGGGAGTTGTGGGGGAAATAGAGAAAATAATTCGTGGCTTCATTTGGGGCAAAGGTAGTGG AGATAGGAAAGTGAACTGGATACCTTGGTATCTTATATGCCAATCAAAGGAATCCGGTGGACTTGGTTTGGGATTCATAA GCTGGAAAAACAAGGCATTGTTGGAAAAATGGGCTTGGAGGTATGGAGTTGAAAAGGACAGTTTATGGAGAAATGTAATA TCAACAAAATATAACCTCAATGGGGAGTTGCTGTTGTTTCAGACAGTAATGTTAGAAGGGAGAAGCTGGTCCTCTATTTT GATCGATATCGTGAACACTTTGAAAGAGAACTCGTTGATATCGAAAGGCTTAAAAGAAGGTCTGTTATGCAAAGTGGGAG ATGGAAAGAACACCAGATTCTGGTCTGATCCGTGGCAAGATTCATCTCCTCTTTACCTTAAATTCCCACGGGTTTTTGTT GTTTGTTCAAATAAGACAGGGATGATAGCGGATATGGGTTTAGTGGTCCAGGGAAGATGGGTATGGGATCTAGCTTTTCA GAGAACTTTCTTTGATTGGGAGGTTGATATCTACAATCAATTTCTAAACTCGATTAATGGCCTTTTTCCAGCTCTTGGAG AACATGATAGCTTGATTTGGGGGCTGGATAACTCATGAGTGTTTTCAGTTAAATCACTGTATAAATGGGCTGAAAGTAGA GTGTTCTCAGCAGGAGAATGTGAAACCCCAGCAAAAAATCGTAAAGCTATCCCACCAAAGGCCAATCTTCTGTTTTGGCA GGTGTGCAACAACAAGCTAGCTACAAAGGAGAATTTGATGAGAAGGGGCGTGTCTCTAAGTGATAATGGTATGTGTTCAC TGTGTGGCCTAGTCCTGGAAACCGGTTCTCATCTCTTCCTCCATTGCCAGGCCACTTGGCCTCTTTGGTGTGCTGTGCTA CATAGAGAGGGGCTATCTTGGGCTATGCCACGGTCATTGAGTGAGGTTGCTTCAGAATGGAATTCTCTTGCTGTTTTTTC TGATTTATTGCTATGGAATCTTACCTCTTATGCTATGGTATGGTCAATTTGGATCGGCAGAAATGATCTACAATTCAACA ACAAACAATTCAAGGTTAGTGAGGTTTGGGAGTTGCACATTCTGAGGGTGGCATGGTGGACAAAAACACTCTGGTATGAT TGTCCATACAATGTCAATCAATTCTCCTCCAATTTCTGCAATATAAAAGTTAGCAAGAAGATAACTCTTCCTAAGGTGGC TGTTTGGGTACCACCCAGCTTGGGTTATTTTAAGTTTAATGTCGACGGGGCTTCTCAGGGCAATCCAGGGCCTTGTGGGG TGGGTGGAGTGTTGCGTAACCACAACAACGAAATTCTGGGTTACTTCTCCAAAGGCATTGGCCAAGGATGGGCTTTCGAA GCTGAACTGCAGGCCATTCTAACGGCTCTTCTCTTTTGTCAGCAATTTATGTTCAGTAATATTTATATTGAGAGCGATGC TTCAATTGTGGTGGGTTGGGTAAACTCAAAGTCTAGTAGACCAAGTGCCCTTTTAAATGACCTGAATCACATTGACTTCC TGAGGGCTCAAGTAAACTGCCTTGGTGTCCAGCACATCTTCCGGGAGGCTAATGACAAAGCTAATCATCTTGCAAAATGC GGCGTCACAAGGACTGAGACTTTGTGGGTTTGTGTGGACATAAGAGTATGATGACTGTTTTGGACGGTAAAGTGTGTTGC TGTTTTGAGGATCCCCCCTCTGTTTGCGCTTCTGCCTGTTGCTGTTGAAGCCGCTGTTGTTGCTTTCTGTTCTTATGTTG TTTGTTGATGTCTTTTGCTGCCATTTGTGGCTCCTTTGTTTCTGTTTGTTTACTGTCTGTTTTTCCTTTCCTTTAGCTTT GTAATTCTCGTTCTATCTGTTATTTCCTTGTATTGTTACTGTTTGGGCTTTGCCCCTCTATATAATATTTGGTATTTCCA AAAAAA
CDS sequence (LotjaGi5g1v0166800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGAAGGGGCGTGTCTCTAAGTGATAATGGTATGTGTTCACTGTGTGGCCTAGTCCTGGAAACCGGTTCTCATCTCTT CCTCCATTGCCAGGCCACTTGGCCTCTTTGGTGTGCTGTGCTACATAGAGAGGGGCTATCTTGGGCTATGCCACGGTCAT TGAGTGAGGTTGCTTCAGAATGGAATTCTCTTGCTGTTTTTTCTGATTTATTGCTATGGAATCTTACCTCTTATGCTATG GTATGGTCAATTTGGATCGGCAGAAATGATCTACAATTCAACAACAAACAATTCAAGGTTAGTGAGGTTTGGGAGTTGCA CATTCTGAGGGTGGCATGGTGGACAAAAACACTCTGGTATGATTGTCCATACAATGTCAATCAATTCTCCTCCAATTTCT GCAATATAAAAGTTAGCAAGAAGATAACTCTTCCTAAGGTGGCTGTTTGGGTACCACCCAGCTTGGGTTATTTTAAGTTT AATGTCGACGGGGCTTCTCAGGGCAATCCAGGGCCTTGTGGGGTGGGTGGAGTGTTGCGTAACCACAACAACGAAATTCT GGGTTACTTCTCCAAAGGCATTGGCCAAGGATGGGCTTTCGAAGCTGAACTGCAGGCCATTCTAACGGCTCTTCTCTTTT GTCAGCAATTTATGTTCAGTAATATTTATATTGAGAGCGATGCTTCAATTGTGGTGGGTTGGGTAAACTCAAAGTCTAGT AGACCAAGTGCCCTTTTAAATGACCTGAATCACATTGACTTCCTGAGGGCTCAAGTAAACTGCCTTGGTGTCCAGCACAT CTTCCGGGAGGCTAATGACAAAGCTAATCATCTTGCAAAATGCGGCGTCACAAGGACTGAGACTTTGTGGGTTTGTGTGG ACATAAGAGTATGA
Protein sequence (LotjaGi5g1v0166800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MRRGVSLSDNGMCSLCGLVLETGSHLFLHCQATWPLWCAVLHREGLSWAMPRSLSEVASEWNSLAVFSDLLLWNLTSYAM VWSIWIGRNDLQFNNKQFKVSEVWELHILRVAWWTKTLWYDCPYNVNQFSSNFCNIKVSKKITLPKVAVWVPPSLGYFKF NVDGASQGNPGPCGVGGVLRNHNNEILGYFSKGIGQGWAFEAELQAILTALLFCQQFMFSNIYIESDASIVVGWVNSKSS RPSALLNDLNHIDFLRAQVNCLGVQHIFREANDKANHLAKCGVTRTETLWVCVDIRV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 12 | 12 | - | – | |
| Phobius | 1 | 38 | 38 | - | – | |
| Phobius | 13 | 20 | 8 | - | – | |
| Phobius | 21 | 38 | 18 | - | – | |
| Phobius | 39 | 61 | 23 | - | – | |
| PANTHER | 59 | 293 | 235 | 5.8E-38 | – | |
| PANTHER | 59 | 293 | 235 | 5.8E-38 | – | |
| Phobius | 62 | 86 | 25 | - | – | |
| Phobius | 87 | 297 | 211 | - | – | |
| ProSiteProfiles | 154 | 284 | 131 | 10.895 | ||
| Gene3D | 157 | 283 | 127 | 8.6E-22 | ||
| SUPERFAMILY | 158 | 285 | 128 | 3.79E-18 | ||
| CDD | 161 | 280 | 120 | 1.83034E-27 | – | |
| Pfam | 161 | 280 | 120 | 4.9E-19 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. | ||
| Molecular function | RNA-DNA hybrid ribonuclease activity | Catalysis of the endonucleolytic cleavage of RNA in RNA-DNA hybrids to 5'-phosphomonoesters. |
Expression pattern of LotjaGi5g1v0166800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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