Transcript — View — Lotus Base

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LotjaGi5g1v0166900.3

Overview

Field	Value
Gene ID	LotjaGi5g1v0166900
Transcript ID	LotjaGi5g1v0166900.3
Related isoforms 2	LotjaGi5g1v0166900.1 LotjaGi5g1v0166900.2
Lotus japonicus genome version	Gifu v1.2
Description	DNA-directed RNA polymerases I, II, and III subunit RPABC3; TAIR: AT3G59600.1 RNA polymerase Rpb8; Swiss-Prot: sp\|Q9M1A8\|RPB8B_ARATH DNA-directed RNA polymerases II, IV and V subunit 8B; TrEMBL-Plants: tr\|I3T9W4\|I3T9W4_LOTJA Uncharacterized protein; Found in the gene: LotjaGi5g1v0166900
Working Lj name	n.a.

Genomic sequence (LjG1.1_chr5:42593207..42596565) extracted from Lotus japonicus Gifu genome v1.2.

ATGGTTGAGATTCTCTTTGACGATATCTTTAGAGTGGAAAAATTAAACCCAGATGACAAGAAATTATTTGAGAAAGGTAT TATTATTATTTATCATGTATATTTTTCAATTTTGTCTGTATATTGGCTTAGTTTAACTTGCTGTTCTTTATTATTTCTGA ATGATGAAAGAAGATTCATATTCACATGTTTGTATATTGTTGTTAATGTCACGATGAAGATGAAGAGTGAAAGACTTTAA CTTTAGTTCAAAAGATATATCTGGAGGCAAGTCACCCTTTGTAATGCATGTCTTCCTAGAAAAATGAATTCTCTTTTGTT AGAAATCTTATAGATAAGTGTTAGATATCTTATACTTATTATTATTAGGTAACACAATTTCATGTAAATAGGGAAACTAG GATATGATATATTATTATCAGGTAACTATAATGCTTGACCTCCGCTGTGTAGTTTACACACACCGATTCAGTCTAATGTT GTCTCTCGGTTTATCCTTATTCAACATCATTTTTCAGAGCTTGCTGTTTTTAGTTGCATTCCCTGTTTATGCTACATGTC CTTTTTTTCTTCTGTATCTTGTGTTCCCATCTGCCTTTTTGTAGTCTCAATTTTTTAACATGAATATGATGAGTGGGATC ATTTGCTCCTATTAGTGACATGCAATATTGTTGTGTATTCTATTCTAATTCTAATCCTTTGGTTTTCTGCTCAAGTTACC CGCATTGAAGCAAGAAGTGAAAGATTTGACATGTTTATGCACCTAGACATCAATTCTGAGTTATATCCGTTAAAGGTGGG TCAGAAATTCGCTCTTTTACTGGTTCCAACACTGAATCCAGATGGTACCCCAGACACTGGCTACTATATTCCGGTAATTA GTTTATTCTTTTTCTAGTACAAGGAATGTTGAATTGATCCCCAATCCCTATTTCTGTACCATTGTGATACTGGAACATAG TCAAAGGTTAAGAGTATATCAATGATTACCCAGGTGTTTGAGTAACCTGAAACTCCTTCCAAATATTCAGCAAAATATCT GATGACCCGTAGCTCTCTCCCGTTCTCTTTATAGCCAATCTCTGTCAATTCTGTTAGACTCTATCTTACAATCACTAACT CCCTGAAATAATAGAGACCAGCCTGCTGGGCTTACGTAACAGATTATTTACCTCTCTTCAATGTCTATCCTTCATGTGCA TTTTGTGGCTGAGTGCATAGGCTTGTGAAAACCCTGGGCGTTTGCCAATCTTTGTTTATTTTACATTCATCAAGATTTTT GTTCTGTGGTTGGGGGCTTTTGGTCTTCATGATTTTGGAATTCAAAACAGAAATATGGTTAATGTTAAATATGCATGTGA ATGTTGGGGGGGGGGGGTAAGAGTGGTTTAATTTTCTACCAAAGATTTCTTGGAAGGTGTGATCTAGTTGATATATGCAT TACTTGTTACTTAAAACAAGCATCTGTGGTCAAGTAAGTTTTAATGCGTCGATTTTGATGATCAGGTGACATTACATAGC TTAGTTTAAGCAGGTGGATGCCATGTTTTCTGGTTGTTCAATTTCAATACTTAGTTTGCTCTTTCAATTTTTTTATCTAC TATTTTGTGTCTTTTTTTTATTTGTATGATACCTGTTTTTTTGGGTTCACTCTAGGAAGTATGAAGTAGGTAAGTTCTGT GCATCTTTTGTACATAGCTTTTGTCAGTCCTCTGATCATTGTCATTACGAGATTCAAATTTTTAGACTCCAGTGCACAGC TTATGGTTGGGTTTGAAAATTTACTGGAAGATGTAACCAATGTTGGTCCAATCTTAGGTGCTGAAAATTTACTAGAAAAT ATGGGTTGTGAACATGATGGAGCATATTGTTGTCTAAATATTTGGGCATTGCAACTATTTAAAAGCACTTGATTTCAGAA TCAGATACGTAAGGAGCTTAATTTTTGTTGGTTCATGTAAAATCTGTTTCAATTGCCTGGGGTCAAGCAACAACTACTAT ATTAAATGAGTGGAGGGTGATCTAGTGTTGCAATCTTATGAATGCAGGTTTTCCATGTAGGATAGAAGACTAGATCTTGT AGCCCTTAAGAGATTCAGTAGAGAAGGATGGGTGAAAGAGTTGTGAACCCCAGAACCCAAAGAGGACTATTGTTCTGATT AACTATGATAGAAACCAGCAATGGATCAACAAGAAAACTGATATTATTGAAGTAACCCCAGGTTATTTGAGAGAACCTGG GCTCTCCTTTTCCCATTTACAATCTGATCCAGAAGATGACTAATGCTCTCTCTAACTCTCTCATTTATAGTCTCATTCTC TAATTAACTCCCACAACCAACTAACCAACTATTAACTACTAACTACTAATGGATACGGGTACCTAACGATCTAGAAAAAT AGAGAAAAAACAGATATGTTTTTAAATACTAGTCATACCCATTTTACAACCCTTAAATCCCTAAACATCCAAATTAAAAA CAATTCCTACCCCTTGCAATAAACCAAGACACAAGTACAATGTAAAATAGCATTACTACTGCACAGATGGCATAATAGTG TGAAAAAAGAATGTGTGGTAGTAACAGTAGTGTGAGATGTTAGCCCAATTTATAACTATAGCTCTCTTTGCCCTTCATTT TTCTTTTTATGTTTGCTATTTCCCTTTTCCCTGTTGTGTCAAATCGGTCAGGTCCAACCATGTGTAAATCAGACATCCTG GATTTGCCTAATAGAATTCATCTGCTTGTTTCTTTCCCAGGGCAATCGGCAATCACTGGCTGATAATTTTGAATATGTTA TGTATGGCAAGCTCTACAAGATATCAGAAGGTTCAGGACGTGAAAAAGCGTATGTCCATCACTGGTTTTGACTTTTGAGT AGCAGAACACTGGAATTACTGTTTAGTTTCTGCATAGCATGCATGTCTTTTTGATTAACCATTTAGAGACTAGTTACTGG GGGCTGTGGACTTTTCTTCCTTGAGATATGAATTATCATGAGCATGAATGAATCATGTGTAGTTTGTATGGTACAGCGCA TGTTTCCAAGTAGCAGTGTTCACTAATTAAAGATGGGATTTGTCATGTTATTTAGTTCTGTAGTGCTAATCAGTGGATGT TATTTCCAAGTAGCAGCTCTCCTCCTGTTAGAGAGGAATGTAGATCATTACATGATACAATTTAATGTCGTAGTATATTT TATGGTTTCCCCCCTTACTGGTCTTGACTTTGGGCTTTGAATTGTAGGGAGTTAAATATTTCATTTGGTGGGCTTCTGAT GATGATGAAGGGAGATCACTCTCATTGCAACAAGTTTGAGCTTGATCAAAGGTTGTATCTTCTGATGAGGAAAGTCTGA

Download Genomic Sequence

CDS sequence (LotjaGi5g1v0166900.3) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGTTGAGATTCTCTTTGACGATATCTTTAGAGTGGAAAAATTAAACCCAGATGACAAGAAATTATTTGAGAAAGTTAC CCGCATTGAAGCAAGAAGTGAAAGATTTGACATGTTTATGCACCTAGACATCAATTCTGAGTTATATCCGTTAAAGGTGG GTCAGAAATTCGCTCTTTTACTGGTTCCAACACTGAATCCAGATGGTACCCCAGACACTGGCTACTATATTCCGGGCAAT CGGCAATCACTGGCTGATAATTTTGAATATGTTATGTATGGCAAGCTCTACAAGATATCAGAAGGTTCAGGACGTGAAAA AGCGGAGTTAAATATTTCATTTGGTGGGCTTCTGATGATGATGAAGGGAGATCACTCTCATTGCAACAAGTTTGAGCTTG ATCAAAGGTTGTATCTTCTGATGAGGAAAGTCTGA

Download CDS Sequence

Protein sequence (LotjaGi5g1v0166900.3) extracted from Lotus japonicus Gifu v1.2 Proteins.

MVEILFDDIFRVEKLNPDDKKLFEKVTRIEARSERFDMFMHLDINSELYPLKVGQKFALLLVPTLNPDGTPDTGYYIPGN RQSLADNFEYVMYGKLYKISEGSGREKAELNISFGGLLMMMKGDHSHCNKFELDQRLYLLMRKV

Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Prediction algorithm	Identifier	Start	End	Length	E-value	InterPro ID
PIRSF	PIRSF000779 View details on PIRSF000779 Search for proteins/transripts with this domain View external data on PIRSF000779	1	144	144	1.7E-47	IPR005570 Show description in modal box View details on IPR005570 Search for proteins/transripts with this domain View on EBI InterPro Service
PANTHER	PTHR10917 View details on PTHR10917 Search for proteins/transripts with this domain View external data on PTHR10917	1	144	144	1.2E-59	IPR005570 Show description in modal box View details on IPR005570 Search for proteins/transripts with this domain View on EBI InterPro Service
SMART	SM00658 View details on SM00658 Search for proteins/transripts with this domain View external data on SM00658	2	143	142	2.3E-64	IPR005570 Show description in modal box View details on IPR005570 Search for proteins/transripts with this domain View on EBI InterPro Service
SUPERFAMILY	SSF50249 View details on SSF50249 Search for proteins/transripts with this domain View external data on SSF50249	3	143	141	5.31E-42	IPR012340 Show description in modal box View details on IPR012340 Search for proteins/transripts with this domain View on EBI InterPro Service
Gene3D	G3DSA:2.40.50.140 View details on G3DSA:2.40.50.140 Search for proteins/transripts with this domain View external data on G3DSA:2.40.50.140	6	144	139	8.0E-51	–
Pfam	PF03870 View details on PF03870 Search for proteins/transripts with this domain View external data on PF03870	7	143	137	1.3E-47	IPR005570 Show description in modal box View details on IPR005570 Search for proteins/transripts with this domain View on EBI InterPro Service

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

GO term	Namespace	Name	Definition	Relationships
GO:0006351 View details of GO:0006351 AmiGO InterPro QuickGO	Biological process	Transcription, DNA-templated	The cellular synthesis of RNA on a template of DNA.	Subterm of View details of GO:0034645 View details of GO:0097659 Part of View details of GO:0010467

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Expression data

Expression pattern

Expression pattern of LotjaGi5g1v0166900.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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