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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0167000 |
| Transcript ID | LotjaGi5g1v0167000.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Chloroplast stem-loop binding protein; TAIR: AT3G63140.1 chloroplast stem-loop binding protein of 41 kDa; Swiss-Prot: sp|Q9LYA9|CP41A_ARATH Chloroplast stem-loop binding protein of 41 kDa a, chloroplastic; TrEMBL-Plants: tr|G7IED1|G7IED1_MEDTR Stem-loop-binding protein of 41 kDa protein A; Found in the gene: LotjaGi5g1v0167000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:42603001..42605732) extracted from Lotus japonicus Gifu genome v1.2.
ATCCTTATAACCCCATATATGTTGGTAATGATAGAAGGGGCGGGTAGGTTGTTTAGCTTTATCTGAAACTGCTGGTTCAC ATACTCTTCACTGTGAAAGCAGAAAACTTAACAACCATATATGGCCATGGCCACGCTAGCTTCCTCTTCACCTTCGTTGC TCTGTTCCCCAACCTCTTCCAAGCTCCTCCCACTTTCACATTCTTCTACTTTGCGCCTTTCTTTCTCTTCATCCTTTCAC TCATCCTCTCTATCAGTTTCTCCCACCTTTCTAGCACACCCTTCTTCAGTTTCTGGACGTTTTGGTAAACATGCTGCTGC ATTCAGCATCAGTGCCAGTGCTGCAGAGAAGAAGAAGGTGCTCATCGTGAACACCAACAGTGGAGGGCATGCTGTGATTG GTTTCTACTTTGCAAAAGAGCTTCTAGGTGCCAGCCATGAGGTCACCATACTCACTGTTGGTGAAGAAAGCTCAGACAAG ATGAAGAAACCTCCTTTTAACAGATTCTCAGTAATTGATCTTCATCTCAGACTAATGATTACACTCTATGCTTGCTGTTT ATGTCTGTGTCCTGTTTTGGTTGTCCGAATTCAGCTAATACTAACTTGCATTGAAAGAAAATTGTGAATTACAATGATAA CAACAAAGTTTTATTGTAAGATTTGAAAAATATGCAGGAAATTGTGAGTGCTGGAGGCCGCACAGTGTGGGGGAATCCGG CTGAAGTAGGGAGCGTTTTAGGAGGGGAAGCTTTTGATGTGGTTTTGGACAACAATGGCAAGGATCTTGAGTCTGTGAGG TTTGTTGTATTGATTCTTGTATACTTGTGTTCAATGCTTGACTTGAAAATGCCCGCAGTGACATAGAACTCATACAAGTT GTTTTAATACATGATTGGAAATCTTTCTACAATTGATTTTAAAGTTAGAGTCAATTACGAGAAGAAGCTTATGCGAATAG CTTTAAGTGTCACAATTGATTCTGGGAAAAGAGAAGTTGATCCAAACATGTTATTGATAAAATTATGGCACTCTGCTAAC AAAAAAACAGACACTTCTCTGATAAATGCAGGTGTAATATCTAAGACAGACATCCTAATAACTCAATCTTCATTTGTAGG CCGGTGATAGATTGGGCCAAGAGTTCTGGTGCCAAGCAATTCTTGTTTATCAGTAGTGCTGGAATCTACAAAACCACAGA TGAACCTCCACATGTTGAAGGGGTGTGTTGAATATTCCCCATCATAGCATTTTGTAAAACTGATAGGCCAATTGCAATTT ATATAAGCTGAAGAGAAAAATCAACTATTCTGCAGGATGCTGTTAAAGCAGATGCTGGTCATGTTGGTGTGGAGAAATAC ATTGAAGAAACTTTTGAGAGTTGGGCAGTGTTCCGGCCACAGTACATGATTGGGTCTGGCAACAACAAAGACAATGAGGA GTGGTTCTTTGATAGTAAGGGGGAATTTTTCAACAAGCTTTATTTTTAACCTTTAATAATCAAATATGATGTAGAGGATC TGTGTTAATTTTGCACCTACTAAATATGTGTGTTGCCATTTGTAGGGATTGTTAGGGACAGACCAGTGCCAATTCCTAAC TCAGGATTGCAGCTCACAAACATAGCTCATGTTAGGGACTTGTCCTCAATGCTTACGCTAGCTGTGGAGAACCCAGATGC TGCAAATCATACAATTTTCAACTGTGTGAGTGATCGTGCCGTGACTCTGGATGGAATGGCCAAACTTTGTGCTCAAGCTG CAGGGCGCCCTGTTAACATAGTGCATTATGATCCAAAAGCTATTGGCATTGATGCAAAGAAAGCTTTCCCTTTCCGTAAT GTGGTAGTTACTAATATCCTATCTTCTGATCTACTCTAAAACCTGATTGCATAATTCACAGATTCTTGCCTATAGAATCT CTTGCTTAACACAAATCATTGAACTGATAAGGGAGGAAAATAGAAATCCCCCCTTGTTGATCAGTTTAGTCATTGCTTAC AAGCAGTGTAATAAATTCATGCAAGTTAGATATTTTAGCCTAACAATTTCTATGAACCATAAACGATGCAGCACTTCTAT GCTGAACCTAGAGCAGCCAAAACTAAATTGGGGTGGAGTTCAACCACAAACCTCCCTGAAGACCTGAAGGAACGGTTTGA GGAGTACATAAAGATTGGGAGAGACAAGAAGCCCATAAAATTCGAGCTAGATGATAAGATATTAGAGGCCTTGAAAGTTC CTGTGCCTGTGTGATCCATTCAAGTTCAAAATAAATAAAACATTGATTTGACAAGATTGTAAGAATTTTTGTTACTTATT CAATTGATGCGTACTGAAGAAAGTTACTTCTCTCCTTATTGAGTATCATGCAGCTAAACGAAACCTATCTGAATTAAGCA GTGATATTTTTACCTATAATAACAAGAACAGCAGTTGTATTGTTAACACTTACAAGACAAGCAAGCATAGGGTGATTACT AGATTCATTACGACTGGATAACCACAAAAGATCCACACAAACTGGTATCAAATGCTTGACAGAGAAAGTGACACCAGATA AAACCCGAAACAAATTAGAACCTGAATCATGGAGGCACTATCAGGTAAACTATGCAGATGAAAAAAAAAATATGGTATGA ACATCGAGAGGGAGGAAGTGTGTTTCGACCGATCACATTCATGGAAGGAACTTGAGTGAAATTTCCATGAAATGGATGGA TGCATGCAAAAT
CDS sequence (LotjaGi5g1v0167000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCCATGGCCACGCTAGCTTCCTCTTCACCTTCGTTGCTCTGTTCCCCAACCTCTTCCAAGCTCCTCCCACTTTCACA TTCTTCTACTTTGCGCCTTTCTTTCTCTTCATCCTTTCACTCATCCTCTCTATCAGTTTCTCCCACCTTTCTAGCACACC CTTCTTCAGTTTCTGGACGTTTTGGTAAACATGCTGCTGCATTCAGCATCAGTGCCAGTGCTGCAGAGAAGAAGAAGGTG CTCATCGTGAACACCAACAGTGGAGGGCATGCTGTGATTGGTTTCTACTTTGCAAAAGAGCTTCTAGGTGCCAGCCATGA GGTCACCATACTCACTGTTGGTGAAGAAAGCTCAGACAAGATGAAGAAACCTCCTTTTAACAGATTCTCAGAAATTGTGA GTGCTGGAGGCCGCACAGTGTGGGGGAATCCGGCTGAAGTAGGGAGCGTTTTAGGAGGGGAAGCTTTTGATGTGGTTTTG GACAACAATGGCAAGGATCTTGAGTCTGTGAGGCCGGTGATAGATTGGGCCAAGAGTTCTGGTGCCAAGCAATTCTTGTT TATCAGTAGTGCTGGAATCTACAAAACCACAGATGAACCTCCACATGTTGAAGGGGATGCTGTTAAAGCAGATGCTGGTC ATGTTGGTGTGGAGAAATACATTGAAGAAACTTTTGAGAGTTGGGCAGTGTTCCGGCCACAGTACATGATTGGGTCTGGC AACAACAAAGACAATGAGGAGTGGTTCTTTGATAGGATTGTTAGGGACAGACCAGTGCCAATTCCTAACTCAGGATTGCA GCTCACAAACATAGCTCATGTTAGGGACTTGTCCTCAATGCTTACGCTAGCTGTGGAGAACCCAGATGCTGCAAATCATA CAATTTTCAACTGTGTGAGTGATCGTGCCGTGACTCTGGATGGAATGGCCAAACTTTGTGCTCAAGCTGCAGGGCGCCCT GTTAACATAGTGCATTATGATCCAAAAGCTATTGGCATTGATGCAAAGAAAGCTTTCCCTTTCCGTAATGTGCACTTCTA TGCTGAACCTAGAGCAGCCAAAACTAAATTGGGGTGGAGTTCAACCACAAACCTCCCTGAAGACCTGAAGGAACGGTTTG AGGAGTACATAAAGATTGGGAGAGACAAGAAGCCCATAAAATTCGAGCTAGATGATAAGATATTAGAGGCCTTGAAAGTT CCTGTGCCTGTGTGA
Protein sequence (LotjaGi5g1v0167000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAMATLASSSPSLLCSPTSSKLLPLSHSSTLRLSFSSSFHSSSLSVSPTFLAHPSSVSGRFGKHAAAFSISASAAEKKKV LIVNTNSGGHAVIGFYFAKELLGASHEVTILTVGEESSDKMKKPPFNRFSEIVSAGGRTVWGNPAEVGSVLGGEAFDVVL DNNGKDLESVRPVIDWAKSSGAKQFLFISSAGIYKTTDEPPHVEGDAVKADAGHVGVEKYIEETFESWAVFRPQYMIGSG NNKDNEEWFFDRIVRDRPVPIPNSGLQLTNIAHVRDLSSMLTLAVENPDAANHTIFNCVSDRAVTLDGMAKLCAQAAGRP VNIVHYDPKAIGIDAKKAFPFRNVHFYAEPRAAKTKLGWSSTTNLPEDLKERFEEYIKIGRDKKPIKFELDDKILEALKV PVPV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 20 | 20 | - | – | |
| Phobius | 1 | 3 | 3 | - | – | |
| SignalP_GRAM_POSITIVE | 1 | 16 | 16 | - | – | |
| Phobius | 4 | 15 | 12 | - | – | |
| Phobius | 16 | 20 | 5 | - | – | |
| Phobius | 21 | 404 | 384 | - | – | |
| PANTHER | 58 | 398 | 341 | 1.0E-190 | – | |
| PANTHER | 58 | 398 | 341 | 1.0E-190 | – | |
| Gene3D | 62 | 383 | 322 | 1.3E-31 | – | |
| SUPERFAMILY | 74 | 381 | 308 | 3.01E-42 | ||
| Pfam | 166 | 297 | 132 | 1.0E-5 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Catalytic activity | Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. | ||
| Molecular function | Coenzyme binding | Interacting selectively and non-covalently with a coenzyme, any of various nonprotein organic cofactors that are required, in addition to an enzyme and a substrate, for an enzymatic reaction to proceed. |
Expression pattern of LotjaGi5g1v0167000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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