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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0167700 |
| Transcript ID | LotjaGi5g1v0167700.2 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | F-box family protein; TAIR: AT4G02740.1 F-box/RNI-like superfamily protein; Swiss-Prot: sp|Q0WRC9|SKI17_ARATH F-box protein SKIP17; TrEMBL-Plants: tr|A0A151RLJ8|A0A151RLJ8_CAJCA F-box protein SKIP17; Found in the gene: LotjaGi5g1v0167700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:42789748..42794078) extracted from Lotus japonicus Gifu genome v1.2.
GAGAGAGAAAACCAAGCGAGAGTGAGTGAAGAGTGAAATGGAAGAATCACCATAGCCACCACTTCCCACCACCGCTATGG CGACATCGACGAACACTTTCCTCCTCGCAGCTCCGTCGTCAACGGCGAAGCGACCGTGTCCGTCGCAAAACCCTAGACCA CCGCCGGAGACACTCAACCAGGTGGAAGAGCATGTCCTCGATGCATTTCTCGCTCTCTCTGATTCCCCTTCTCTCTCCCT CGATCTCCCCCTTGAGAGCCTTCTCGAATCGCTCCCTTCTGATTCTGATCAGACGGAACTCATCGATCGCGCTCTCAAAA TTGGATCCATGCTGCTTGATGCTGCTAAACAGTCCTCAAGGAAACGTGCTTCCAAGCATAATTCAATCGCTTGGCCTCTC CCTCCTGACCTCACTATCAAGGTATTCATTGCTTCTTTCATGGTAGTTTGCTTTTTTACATCAGAATTTTCAGTTTTTTG CTTGGTGGGCATTTTTCAATTTGCCCCTTTTTGATTGTATGAACTTTCGTTTTGCATTGGTGGTTTGAATTCAACCTTAC TATTTTACTTGACCTGTGTTATTGATGGCTTGGCTGAATTTGTAAACCTTTTTCATATTTGGGGATACCAAATTTGATAC TATTATCTATTCTCTGAACACACTACCTAGGTACTTAGATTTGTGCCTCTGCTAGGATGTGAGCTTCTTTCGGGTGTTGA TTCATTGTTGTTGTGATGTGCAGGTGTTCTCAGCTCTTGATACTCAGAGCCTGTGCTATGCGTCTGCTACTTGTACATTG TTTAATAAATGTGCTAAGGATCCTTTGTGCTATGAGAATCTTGATTTGACCACACTTGTTCCCAAGGTTAACAATTCAGT GGTTTCAACAATGATTCAGCGAGCTGGAAAGGCACTGAGGTAAACTTCTATTAACTGGTAACTGGTTATATAGTGGTATA ATTTATGAACTGGTAATCTGGTCTGGTGGGGATCATTTGTCTATTGCAGAACTTCATCTTTGGCCAGTAAATGCAAAAAA TGGGGGGCCAGTGGGGTATGTTTGATGGCATATTGATTATTTGTTTTGATATCTGCGTTTTATGCATTGCTCCACATTTT TTCGGTCCCTGAGAGAAACTTTTGTATTTTAATTTGTTTGTTAGCTCTATCAGCTACGGGTAGAGAAGAAAGTGAAAAAC TTCATCCATTTTAACCTATACCAACTTGCGTGTGCATTACATTCTTATGTATTTTTCCTCATTATCTTCTTATGTTCATT TTATTAATTTGTGGATCAGGTCTCTTAAGCTTGGTGTGATCCCTGGTGCTACTCCTTCACCTGGGTGTTGTCAACCATTG GTTTGTCCCATCAGAAATGCCATTGTAGACGTATCCAACTTCTCATGGACTGATAAGAGATCTCGACAGGGGAGAGAATC TTCTATTCTTACAAGATCCTGTTTAAGCCCCTTAAGTAGGGATGTTGGTGCAGCTGCTCCAGGGTATGTTGTTCATTCAC CCTAGAATTCAGTACTTTGGGTTACTTGTTTTAAATGAGCTATTTTATTTTCATTTACAGGGCTCTTTTGAGAAGGCTGA AATTGTACAATATTGAAAGGATGGATAATGTATCACTTAGTGGGGCATTATCAGCATGCCCTTCTCTTCTTGACTTGGAA ATTGTCGGGCTGTAAGTTAGTTTCCGTCTGCTTTATTTCTCTCGCTTCATTTCCTTATTTCTCTCGCTTCATTTCCTTAT AAAACTACAAATCTTGACCTTTCCTTGAGTTATGACGAGTATACTGATGGTACATACTTTTAATAAAAATGTGATTTTTG CTGATTCTAGTTGCATTTGTGATACTTAGTTATCCGGTTAAGTTCTTAATTCGTCACAGTAGCAGTTTCATTTTGAAATT CATTCCACTAATTTATTTCTTATGAGAAGTTTGTTTCCAAAGGATTATTTTTTCATTGGACGTGATTTTTTCTTTGTTTT AAATGCTAGTCATGTTGAATTGAGGCTAACGTTGATGTCAGTAAGCGCGCACTGCCACTTGATTGAGCGTTTGTTTTTTG AGTCTTCCAAAACAGGTAAGTTATTTTCTCACTATGTTTTGTCATATATATAAACTCTCTTTATTTCCCTGCTTATCTGC TTTTAATTATCAGGTAGAGACGACAGTTTGAAAACGCAAACCTGTGTTGAGCTAGTGGATAATTGTCCTCATCTAACTTC TCTGTCCCTTAGAGGTTTTAAGCTACATGATTATAAAGTTCGTGTACTGGTTAAGGTATGTTCTCAGGAAATTCTCAACT ATTGCAATGACTCTTGTTAACTCTGGGCTAATTTTCTTACGTTAAAATTATTCATTAAGAAGTTGTTTCCCTATATATAT AGTGTTTAATTTCAGCATTGTTCTTAGTAATTTGTTTAAGGCATATGGGAAAGGGGGGAAGAGTTGAGAATGTTAGAAAG CCTCGAGTCCGAGATGGCTGCATTAGTTCAGGTTAAAGGAAGCTGGTGAACTTTGCAAATTGCAGCTTACAAGTCTTCAT TAAGTGTGACAGTCAGTCTAAAGGGCTTTATAAATAGGGTTAACAACTGTTCTATTTTGAGCATGGGCTTTTCTTACCCA AGCGGGGTCTTATTTTCACCATTGACTATTTTCCTTGGTTAACAGTAATTGTAGTTTTGCCAATTGCTGGGGGTTCTTCC AAAATTTTAGGTTAACTATTTATGTATGCTTTATCAATCTCGTTCCAACAATGAACGACCTATATGTTTTGTCCTAATTT CTAATTAGATGATCCACTAATTCAACTGATGCTGAATTAGTTATTTCTTGTGGTAGCTGGTAAGTGAATTTAGTTTATCT AAGTAATAGTTCTCCAATGATACATATCCCTGTGCATTGAAATGACTGTTTTGAGTAAGTGAGCAAAGTGTTATTTTCTT GGTTTTCATTATCCTAGTTCTCACTTTTGCATAAAAGAAATAGAGGGTTATTAATTTCAATTTGTTCATGCAGGGATTTC GTAAACTGAAATATGTTGATTTTTCTACATCCTATTCAATCACCGGAAGCTTCTTAAGGTTTGTTATTTTTAAAAACATT TTACAAGAACTCTTCACATTATCTACCTGTTAGAATGATTTCTTTGTATCTGTTTTTTTCAGTCCAATTATCTCACAATA TTAAAACCTTCATTTTCAGAAACCTTGGAAGCTACAATGGTGGGAATTCTCTTGAGGCTTTAATTTTAAGGGATTGCATG CATTTGAAAGAGGTTTTACTTCTAATGTATTTGTATTTCATTTTGTTTTTCTAATATATTGCTTCTGAAATGTTTATACT TTCATCTGCAGGTGGAAGTTGCCAGGTTGCTGACAGCAATTCTTGCAGGCGATTTCAAATCGCTCCTACATCTTGTGGGT GCATCAAAATATGTTACATAGTAAAACAGCTTAAATGTGTTTTTGATTTCTAAATTTTATGACTTTTATAAATCATACCT ATCGGAGTTTTATTTGATTTATTCCCTATATTTATAAAAAATTCTGTGTTTGTAATTCAGCGTGTGTTTTTGTTCCTTGT TGAGGACTAGAAATGAACATTTTTGTTAGATATTGGGATTGAAAAATGAATAATATTCAAATAGGGACTAATGTAAAAAA ACGTTATATTTTCTGAAACCATCAACATATTTAAGCCTATAAATGTTCCTGCTCGACTTTCTTTTAATTTTGCTTCTAGT TCTTATTGTTTCCTTTATCAGGATATTTCCAATCGGGAAGGCTTAGCATCTGAGGGTGATTGGTACCATAGGTGCTACAA CTCTAGGTAGTGAATCATTTCTAGATTAGATAATTTAGTCTCAAATTTCTGAATGACTGATGTTTTGAATGGGGTTTCTC TATGGGGTGCAGTATCATGCCTGTAAAGCAGGTTTTAGAAGCAAGGCCTGATATGTGTCTGGTAGCTGAATATCCTCAAG AAGGAAGGTTAGATACTTTTCCAATAGACTAATTTGGTGCAGTGTCATTCATATTTGCAGATGGAGTTATGTTTTTGTTT CCCTTCTAAAATTTGCCATTTTATGTTCTGGATTTGGTTGCAGTTACATGGACTCGTTTGACACTGATATGAACAGTGAG ATAAGTCTTCCATCACAATTGAGCTTTCATAGTTCAGATGGATTGGTTTTTTTAAGTACATCTGAAAGCAGCTACAATAG TGACCATGGTAGTGGTAATGAGGATGGTCAAGAGGCCAACTATGTAATTTACGAGGAAAGTTCAGACGAGATAGACTTCT TGTCCCTGTAG
CDS sequence (LotjaGi5g1v0167700.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCTGCTTGATGCTGCTAAACAGTCCTCAAGGAAACGTGCTTCCAAGCATAATTCAATCGCTTGGCCTCTCCCTCCTGA CCTCACTATCAAGGTGTTCTCAGCTCTTGATACTCAGAGCCTGTGCTATGCGTCTGCTACTTGTACATTGTTTAATAAAT GTGCTAAGGATCCTTTGTGCTATGAGAATCTTGATTTGACCACACTTGTTCCCAAGGTTAACAATTCAGTGGTTTCAACA ATGATTCAGCGAGCTGGAAAGGCACTGAGGTCTCTTAAGCTTGGTGTGATCCCTGGTGCTACTCCTTCACCTGGGTGTTG TCAACCATTGGTTTGTCCCATCAGAAATGCCATTGTAGACGTATCCAACTTCTCATGGACTGATAAGAGATCTCGACAGG GGAGAGAATCTTCTATTCTTACAAGATCCTGTTTAAGCCCCTTAAGTAGGGATGTTGGTGCAGCTGCTCCAGGGGCTCTT TTGAGAAGGCTGAAATTGTACAATATTGAAAGGATGGATAATGTATCACTTAGTGGGGCATTATCAGCATGCCCTTCTCT TCTTGACTTGGAAATTGTCGGGCTTCATGTTGAATTGAGGCTAACGTTGATGTCAGTAAGCGCGCACTGCCACTTGATTG AGCGTTTGTTTTTTGAGTCTTCCAAAACAGGTAGAGACGACAGTTTGAAAACGCAAACCTGTGTTGAGCTAGTGGATAAT TGTCCTCATCTAACTTCTCTGTCCCTTAGAGGTTTTAAGCTACATGATTATAAAGTTCGTGTACTGGTTAAGGGATTTCG TAAACTGAAATATGTTGATTTTTCTACATCCTATTCAATCACCGGAAGCTTCTTAAGAAACCTTGGAAGCTACAATGGTG GGAATTCTCTTGAGGCTTTAATTTTAAGGGATTGCATGCATTTGAAAGAGGTGGAAGTTGCCAGGTTGCTGACAGCAATT CTTGCAGGCGATTTCAAATCGCTCCTACATCTTGATATTTCCAATCGGGAAGGCTTAGCATCTGAGGGTGATTGGTACCA TAGGTGCTACAACTCTAGTATCATGCCTGTAAAGCAGGTTTTAGAAGCAAGGCCTGATATGTGTCTGGTAGCTGAATATC CTCAAGAAGGAAGTTACATGGACTCGTTTGACACTGATATGAACAGTGAGATAAGTCTTCCATCACAATTGAGCTTTCAT AGTTCAGATGGATTGGTTTTTTTAAGTACATCTGAAAGCAGCTACAATAGTGACCATGGTAGTGGTAATGAGGATGGTCA AGAGGCCAACTATGTAATTTACGAGGAAAGTTCAGACGAGATAGACTTCTTGTCCCTGTAG
Protein sequence (LotjaGi5g1v0167700.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLLDAAKQSSRKRASKHNSIAWPLPPDLTIKVFSALDTQSLCYASATCTLFNKCAKDPLCYENLDLTTLVPKVNNSVVST MIQRAGKALRSLKLGVIPGATPSPGCCQPLVCPIRNAIVDVSNFSWTDKRSRQGRESSILTRSCLSPLSRDVGAAAPGAL LRRLKLYNIERMDNVSLSGALSACPSLLDLEIVGLHVELRLTLMSVSAHCHLIERLFFESSKTGRDDSLKTQTCVELVDN CPHLTSLSLRGFKLHDYKVRVLVKGFRKLKYVDFSTSYSITGSFLRNLGSYNGGNSLEALILRDCMHLKEVEVARLLTAI LAGDFKSLLHLDISNREGLASEGDWYHRCYNSSIMPVKQVLEARPDMCLVAEYPQEGSYMDSFDTDMNSEISLPSQLSFH SSDGLVFLSTSESSYNSDHGSGNEDGQEANYVIYEESSDEIDFLSL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 443 | 443 | 1.1E-231 | – | |
| PANTHER | 1 | 443 | 443 | 1.1E-231 | – | |
| SUPERFAMILY | 15 | 70 | 56 | 3.01E-9 | ||
| Gene3D | 23 | 350 | 328 | 2.8E-22 | ||
| Pfam | 24 | 66 | 43 | 7.9E-7 | ||
| SUPERFAMILY | 156 | 336 | 181 | 3.92E-13 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi5g1v0167700.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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