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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0168400 |
| Transcript ID | LotjaGi5g1v0168400.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Late embryogenesis abundant D-like protein; TAIR: AT3G22490.1 Seed maturation protein; Swiss-Prot: sp|P09444|LEA34_GOSHI Late embryogenesis abundant protein D-34; TrEMBL-Plants: tr|G7IDP3|G7IDP3_MEDTR Late embryogenesis abundant D-like protein; Found in the gene: LotjaGi5g1v0168400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:43120771..43123463) extracted from Lotus japonicus Gifu genome v1.2.
ATTACTTCCCATTCGGTGGAGGTGGAGAGAAAAGAGAACAATGGTGACATATACACAAGAGGACTAGAACAAGCTAGGTC CTTAAAATTTCATATTCTTCATAGAGTAATGATTTGTATACTCTCCTTTTCCACCTCCACCTCCAAGGATTAAGAAGAGA AAAAATAAAAAAGAGTGATATGATATGTGATGTGACAGGAAATGCAGAGAGAGATAGAAAGAAAAATGTGTGGAAAAGAG ATGGGAGAGAAAGTGGAGTGTGAGTAAATCATTACTCATTCTTCATACCATGTGTCAAGCACTTTGACACTTGAATGCCA CCAATAACTGGAACCACCGAACAAGCATCCATCCCAAGCTGCCACGGGTAAAACACATCCTCCCCTCTCAATTCAACCCT CCCATATATAAAAAGTTCCAAACCCACACAATCCATTTCAATTCGAAGCTCACACTTCAACTAAACTTGTATTTGTAATT TCATCATCATCATGAGCCAAGAACAACCACAACGACCTCGTGCCGAGGACGCCATCAAATACGGCGACGTATTCAACGTC TCCGGCGAGCTGGCATCCAAACCGATCATGCCAAAAGACGCATCTCTAATGCAAGCAACAGAGAATCAAGCACTCGGGAC AACCCAGAAAGGCGGCCCCGCTGCCGTCATGCAATCTGCAGCCGCCCTGAACGCCTCCGCAGGCCTCGTCGGCCGTGAAG ACATCTCCGACGTGGCCAAGGACCAAGGCCTGAGTGTGTCCGAGGCCAAAGTGGGTGCCAACCGCGTGATCACAGAGTCC GTGGGCGACCAGGTTGTGGCGCAGTATGTGGAGCCAAATGTGCTGATGAATGCTCCTGGTTCGGTTCTGGACCCGGATTC GATAACCATTGGGGAGGCGCTTGAGGCGTCGGCGCTGTCTCCGGCTGGTGATAAGCCGCTGGATCAGAGTGATGCAGCTG CGATACAAGCTGCTGAGATGAGAGCCACCGGGAAGAATGAGATCCAGCCTGGTGGTTTGGCCGCCACGGCGCAGTCGGCG GCCACAAGGAACACTCGGACGCTGCCTCAGCTTCAGAAGACAACCTTGTCTGATGTTTTATCGGTAACTTGTCCATCGTC ATAACAAATATGTGTGATTTTGGTTTAATAATTTCTGAAAAATATTTTCCTATATGTATAAAAAATTAAAATTCTGAAAA ATGCTCATATAGTGGTTCCAAAAACTTAATAGGAGTTTTTTGATGAAAAAAAAAACTTAATAGGAATTGTAAAATATTGA GGGTTGTAAATATGAGGTAAAATAGTGGTTCCAAAAACTTAATAGGAGTTTTTTAAAAACTTAATAGGAATTGTAAAATA TTGAGGGTTGTAAATATGAGGTAAAACATATATTTTATCAGTGTTAATTAAGTTAAAGTATCTACCTCACTATTAAGAGT CTTTTCAAAACAAAACAAAAAGCAAAAGAGTCTAACTAATTGAGTTTTTTTTTTTTTTTTAATTTCCAATAGTTGGGAGG CGAGATCATACTCAAATAATTATATCTCATATTTATTTACTCTGAAGAATATGTTATATAATATTTTATTAAGAGTTTAA TGGATATGCACTGAAAGTGTAAAATAATTTTACATAGACATGCAATTGAATTCCGCCAAATCAAAAAATATCTTATTATT TTAATTAAAATTAAAGTCAAATGTAATTATCTCTCCTATGTGACATGCTTTGATTGGATGACTGTGTAAAACTATTTTAC ACTGTCAGTGCATATCCATTAAATTCTTTTATTAAATTATTTGTAATTCTTCCATGAGTGTTACTTGAATGCAGGATGCG AAGGAGAAGCTGCCATCAGACAAGGCGGTGACACGAGAAGACGCGGAGGGAGTGATTGGTGCAGAGATTAGAAACAAACC GGATATGAGAACCACCCCTGGTGGTGTGGCTGCATCCATGGCTGCAGCAGCCACGCTTAACCAAAACACGTATGTTAGAA GTTAGAACTTAGGACATTTAAAAAATATTCTGGCACTATAATAGAGCAGAATGAGATTTTCTTTTTCTTTTCTTTTTCCT CTATATTTTGCATTTCTATAAATTACATATATGGTTTTGCTTTGTTGTGCAGGAAAAGTGGTGAAACTTGAAGATCAATC CAAGTTTCCGTCGTATATTTGTAGCATGCATCCATGGCAATTGGCAAGCAGTGAAATGAAGTCCCCTCTTGAGTTTGACT TATGTTTTGTTTGAAAAAAGTACAGCACTTCTCGTCTTTTTATATTTCCTTTTTCTTTTGTAGCTTTTATTTTTATTTTC TATTGCACTTCACTTTTTTTTTTTGGTCAAATTTGCACTTCACATATCTTCCCTTTTGTATTTGGGCCATTAATGTGCTT TTAAACATTTCATTTTGTCCTTCAATTCTGCGTATCTTTCTTTTCGTGTCTTTAATTTGGTACATTGTTCTTTAAATTTT TTGGTCGGTCAATGGTCTTTTACAATTGTTTATTTCAAACAAATCGTAGAACAAGTTAGGCCCATACCAAGCCCTATATT GACCCATATAATTATTGTCCCAGAAGAGCATCTCAGAAGTTTCTTATTAAGCCCTATAATTACTTTGGATCCAAGAATTA CGTTTTCCTTTTGTATTACCATCGGTGCGAATTTGGTTTTAGTTTTTCTTTTG
CDS sequence (LotjaGi5g1v0168400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGCCAAGAACAACCACAACGACCTCGTGCCGAGGACGCCATCAAATACGGCGACGTATTCAACGTCTCCGGCGAGCT GGCATCCAAACCGATCATGCCAAAAGACGCATCTCTAATGCAAGCAACAGAGAATCAAGCACTCGGGACAACCCAGAAAG GCGGCCCCGCTGCCGTCATGCAATCTGCAGCCGCCCTGAACGCCTCCGCAGGCCTCGTCGGCCGTGAAGACATCTCCGAC GTGGCCAAGGACCAAGGCCTGAGTGTGTCCGAGGCCAAAGTGGGTGCCAACCGCGTGATCACAGAGTCCGTGGGCGACCA GGTTGTGGCGCAGTATGTGGAGCCAAATGTGCTGATGAATGCTCCTGGTTCGGTTCTGGACCCGGATTCGATAACCATTG GGGAGGCGCTTGAGGCGTCGGCGCTGTCTCCGGCTGGTGATAAGCCGCTGGATCAGAGTGATGCAGCTGCGATACAAGCT GCTGAGATGAGAGCCACCGGGAAGAATGAGATCCAGCCTGGTGGTTTGGCCGCCACGGCGCAGTCGGCGGCCACAAGGAA CACTCGGACGCTGCCTCAGCTTCAGAAGACAACCTTGTCTGATGTTTTATCGGATGCGAAGGAGAAGCTGCCATCAGACA AGGCGGTGACACGAGAAGACGCGGAGGGAGTGATTGGTGCAGAGATTAGAAACAAACCGGATATGAGAACCACCCCTGGT GGTGTGGCTGCATCCATGGCTGCAGCAGCCACGCTTAACCAAAACACGAAAAGTGGTGAAACTTGA
Protein sequence (LotjaGi5g1v0168400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSQEQPQRPRAEDAIKYGDVFNVSGELASKPIMPKDASLMQATENQALGTTQKGGPAAVMQSAAALNASAGLVGREDISD VAKDQGLSVSEAKVGANRVITESVGDQVVAQYVEPNVLMNAPGSVLDPDSITIGEALEASALSPAGDKPLDQSDAAAIQA AEMRATGKNEIQPGGLAATAQSAATRNTRTLPQLQKTTLSDVLSDAKEKLPSDKAVTREDAEGVIGAEIRNKPDMRTTPG GVAASMAAAATLNQNTKSGET
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 258 | 258 | 1.4E-138 | – | |
| PANTHER | 1 | 258 | 258 | 1.4E-138 | ||
| Pfam | 15 | 69 | 55 | 4.0E-17 | ||
| Pfam | 131 | 189 | 59 | 2.6E-22 | ||
| Pfam | 197 | 255 | 59 | 3.3E-21 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi5g1v0168400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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