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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0169600 |
| Transcript ID | LotjaGi5g1v0169600.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Lipid transfer protein; TAIR: AT2G48140.1 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein; Swiss-Prot: sp|Q9LZH5|LTPG2_ARATH Non-specific lipid transfer protein GPI-anchored 2; TrEMBL-Plants: tr|G7IDM6|G7IDM6_MEDTR Lipid transfer protein; Found in the gene: LotjaGi5g1v0169600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:43435261..43437268) extracted from Lotus japonicus Gifu genome v1.2.
ACCTGTTCTCTCCCCCTGAATGTTGTCTCCCCCTGCAAATATATAATCACATCCTATAATCATTGTTTGTCAAACCCATC ACCATCCTGTGACTGACATCATTAATCTTCTAGCAAAACACCTATTCTCCAATCACAAATGGGACACCTCAATCCTTTTC AAATGACACTGGTGATTATGATGCTATTATCAGCCACATTAGTAATTAATTTGGTCACTGTCACAGGGCAGATTAGCACA CCCTGCACAACCTCTATGATCACCAATTTCACACCCTGCGCCAACTACATCACTGGAAGCACCAACAACAATGGCTTAGT GCCATCAGCTACTTGCTGTGATGCGTTCAAGTCTTTGATGGGCACTAACATGCAGTGTGCTTGCCTGCTTGTAACAGCCA ATGTTCCATTGCCACTACCAATTAATAGAGCTCTTGCACTCTTCCTTCCACAAGCGTGTAACGTTAATGGAATGCCTTCA CAGTGTAAAGGTACAAATTAATAATTCATTACTAAATGGCGATAAATTTTGACCCTTTTTCACATTTTTCTTTTTGGTAA ATGAAATAATTGGATATGTAAATATTTAATAGAGTTTTTGTGTACATTGCAGCCTCGGGTTCTCCTTTACCTGCTCCAGG TGATTCATTTATTCAATTAATTGCTTTGGTAGTATTTTATAATCAACCTAATATTTTATCTTATTAAAAGAAAACTTGTA AATTTTTTTATTTTATTTTTGGGATTGTCTAACTTACTATGGGATTGGCAGGTCCCGCTATGCTTGTACCAAAGGACCCA ACTATTCCACCAAGTGCTGCTGCTCCCTCAAGCCCACAAGGTAGTCAATTTGCTTACTTGGACCCAAAAAATGCTTTTTT TGAACGTCCCAAAAAATGCTTACAAGTTTGAAATATTGAGCTTAAATAATTGACCAACAAAAAGCGTAAATAAAGACAAG AAAATTACTAAGCGAGTAAAATAAATATGTACTACAAGATTTTTTGGTACATTAGAGGATTAAAATTTAATAAGTGTAAA TAAATAAAAAACATGGTTTTCTGATTAAGATTTTTATGTAATCTTTACAACATTTCAGTTTTAATGTAACATTTTATTGA GTTCTTGATGTGAACAAAAATTTTTATGTGTTTTACAAAAAATAATAATAAGGGTTTGTTTACCCTTTTTTTCCATTTCA GCTCAAAATAATTAGTGGGCTGATATGCATTATTTGTCTTTTTTTTTTTGAAATACATTATTTGTCATTCCGTTTGTATA TTTTTTTATTAGGTAAAAATGTGTCTTCAAACTTTATAAAATATGTGTCCACATGTAACAAAAAAATCTTTATAAAATAT TTTTAGAAAAAAGCATAGTTATAGATATTTTACAGTTAAAAAATGTGTTGAGTTTTATCTTACAAGATTTTCCATTTTGA TTCTAGTGGGAAGTTAATTTATCTAAATTTCACTGCAGTTTCTAAAACCGCTGCCATAGCTGAAGTTCGCAAATTAGAAC ATGTATTGGCACCAGCACCGTTACCAGCAAAATTAACACCAATGAAGCATAATCGCCCAAGAAAAGTCCAGATTTCAACC AGTACTCTTGAGCCAATATTTAACATATACTGAAATGTATCATTATTAATGTGAAATTTTGAATTCTGTCTTTGGGACCC GATCATGAATAAATGGATAATCCTGTTTGTGCTTAGTGTTCTTTTGTACCTTATTCATCCAAGAGGCAGAAGGCACAAAC CTCACCTAATTAATTATCGTGTTTTATATCAGTTTATATGTTCACAAATAAATTAGTCACATTTAAAAGAATTAATTTGA ATTTAGCTCATAGGGGTGATTGGTTCCAAGGAGGGGATGGAAGAGACTGAGCGAGAGAGAGATGAGATATTTTAATCTTA TCATATTTGATTTAAAGTGATAAAGGGAAGCTAATCATTTTCTTGTTTGATTTATGAGGGGATGATTGTTAATTTGTAAC AATTTTAT
CDS sequence (LotjaGi5g1v0169600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGACACCTCAATCCTTTTCAAATGACACTGGTGATTATGATGCTATTATCAGCCACATTAGTAATTAATTTGGTCAC TGTCACAGGGCAGATTAGCACACCCTGCACAACCTCTATGATCACCAATTTCACACCCTGCGCCAACTACATCACTGGAA GCACCAACAACAATGGCTTAGTGCCATCAGCTACTTGCTGTGATGCGTTCAAGTCTTTGATGGGCACTAACATGCAGTGT GCTTGCCTGCTTGTAACAGCCAATGTTCCATTGCCACTACCAATTAATAGAGCTCTTGCACTCTTCCTTCCACAAGCGTG TAACGTTAATGGAATGCCTTCACAGTGTAAAGCCTCGGGTTCTCCTTTACCTGCTCCAGGTCCCGCTATGCTTGTACCAA AGGACCCAACTATTCCACCAAGTGCTGCTGCTCCCTCAAGCCCACAAGTTTCTAAAACCGCTGCCATAGCTGAAGTTCGC AAATTAGAACATGTATTGGCACCAGCACCGTTACCAGCAAAATTAACACCAATGAAGCATAATCGCCCAAGAAAAGTCCA GATTTCAACCAGTACTCTTGAGCCAATATTTAACATATACTGA
Protein sequence (LotjaGi5g1v0169600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGHLNPFQMTLVIMMLLSATLVINLVTVTGQISTPCTTSMITNFTPCANYITGSTNNNGLVPSATCCDAFKSLMGTNMQC ACLLVTANVPLPLPINRALALFLPQACNVNGMPSQCKASGSPLPAPGPAMLVPKDPTIPPSAAAPSSPQVSKTAAIAEVR KLEHVLAPAPLPAKLTPMKHNRPRKVQISTSTLEPIFNIY
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 10 | 10 | - | – | |
| Phobius | 1 | 30 | 30 | - | – | |
| SignalP_EUK | 1 | 30 | 30 | - | – | |
| SignalP_GRAM_POSITIVE | 1 | 30 | 30 | - | – | |
| TMHMM | 10 | 32 | 23 | - | – | |
| Phobius | 11 | 22 | 12 | - | – | |
| PANTHER | 12 | 174 | 163 | 6.7E-57 | ||
| PANTHER | 12 | 174 | 163 | 6.7E-57 | – | |
| Phobius | 23 | 30 | 8 | - | – | |
| Pfam | 27 | 116 | 90 | 2.4E-14 | ||
| Phobius | 31 | 200 | 170 | - | – | |
| Gene3D | 33 | 118 | 86 | 1.9E-12 | – | |
| SMART | 36 | 116 | 81 | 6.3E-4 | ||
| SUPERFAMILY | 39 | 113 | 75 | 3.26E-13 | ||
| CDD | 44 | 109 | 66 | 7.44014E-12 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi5g1v0169600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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