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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0170700 |
| Transcript ID | LotjaGi5g1v0170700.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Auxin canalization protein (DUF828); TAIR: AT3G63300.1 FORKED 1; Swiss-Prot: sp|Q8W4K5|VAB_ARATH VAN3-binding protein; TrEMBL-Plants: tr|V7BIA1|V7BIA1_PHAVU Uncharacterized protein; Found in the gene: LotjaGi5g1v0170700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:43911960..43919492) extracted from Lotus japonicus Gifu genome v1.2.
AAAGGTCTTTTAATAATAACTCTTCCATTAATATACACTACTCGTTTCTCAACACTTTATATAGACCTTCACTTTGCCAT GCTGCCACTCTAAGCAATAAACATTCAACTTTCAAGGCCATACTTCATTTCATCACTGACATGGATCCAAAGCTCACAAT CAACTGTCACCGAAATGAGTTCCTTCCAACTAGTGCAGGCACTCAATTGCCAGAAAGCCCCAGAATACCAATGGAGTTTC TGTCAAGGTCATGGAGTGCCTCTGCTCTTGAGGTCTCTAAAGCCCTGACACCACCTCAACCACACACACCACCTTCTTGC ATAGCTTCCAAGCCTTCTAATGCTTCCTCTTGTCTCACTAATTCTATTCCTGAAGAAACTACTTACCATTCAGAGGAGTC CTCAACAATGTGTGGGAATCAGTTCTCTTTTGCTTCCTCTGCTACTTCACAGTTTGTCCTTGAGCGCATCATGTCACAGT CCACAAGAGAGGTGCTTATAACCATGTCACATTGTTTCTCATAATGATTTTTTTTCCCCATCAAATTATAGCCATATTTG GATAAGCTTATTTTTCCTAATTTTTGCACCCAGAAGCTAATAGTCTATCCATCCAGAAGAAATTTTAGCTTTAGAGTGAA TACATATTTGGATACACGCTGAAAAAACACAATAAGCCATAATCACGGAGCCAGAAACAACTTCCTTAACTTTTGTATTG TCTACAATGATTTTGACTTGTATTAATGTCTACAATGATTTTGACTTAATGTGTTTTTATACCGTGTATCCAAACATGTA CTCACAATTGTAGTATGTCTCAACTCTCAAACATGCTATATATGTGTTACATTGTTCATTGTTTACCAGCTTGAGACATT GTCTTTCTTTGTAGCAATCCTTATTGTTTTTAAAACCATTTCATTCATGTGTGATTGGTGTATTATGTGACAGGAAGTGT CTCCATTAACATCAGGTAGACTGTCCCACAGCAGTGAACCTGTGAACGGTGGTGGTGGTTCTTTAACCGGAACAGATAGT CCTCCAATTTCTCCATCTGAGGAGTACGACGATGTTGTTAAGGTAGATATCTCTCTGCTCCTTACCCTTTTCTTTTGTTT ACGGGGTGGGGCTATGAGAAACAAGCAGGATGGTGAAGTAACTGTATTGCACTGTTTTCTTCCTCTAGCAACCTTGCTTT TTCGATGACATGTTTTGTTTCTGTAATAAACTACTACTATTACTTTCTTGTTATGGAAAACACTATGCTTTTGTCAGCAC TTCTAATATACAAAGCTTATCAGATAAATGTATTGTATTAAATTATTAATGACAAACAAGTGTTTGGAATTTTTTTTTTG TTAATAGTAAATACTGAGATAGAGAAGCTACTCGTTGCACATTTAGAAACTCTTTTGAATAATCAGTATAAGAGAGAAAC TTCTATGAGTAACTATGATCTGATTTCGATGAAAGAAAAAATGATGCACACATGATATAAAAGTTTTATTTTAGAATTTA TTTTAAATTTATAATCAATTGGTATAAGGACGGCATTGGATTAAGAGGGTTTTCATATTCACCGCCACAAAAAGGAAAAC AAATTATGTTTGAAATTTTACAAGAGAAAAAAAACCTGAAAGAGTCTAACTTATTTACCCGCCAATTATATGGCTTATTT CTCATGGCTGCATGAAAGACACTAGAAAGGTTTATGTTGATATATATTAAATTAAATTACTCACTAATGGTGATGCTTAG TGCTAGCTGCTCAAGGATTTTCCATGAGAGTCAGGAGTCACTTTTACTTTATGCCACCATTCCCCCACACACTCAAAAAA AAGAGCTATATAGCCTAAAGCATAGACTTCTGAAGAGGGCTATGACTTTTTCATTTTAAAATTTTACCTTTTGAAACTTT GGAAACAACTTTTTGATGGGACCTGGTGTGTTTTAAAGAGGGTTACTGATCAAATTTAGAGGCCATGTTTCCAGTCAACT TGCCTGACTTGTTGATTGCTTCACAGCAGGATACAGAGTTTGACAGTCCACTGTACTTTTATCTCCTCATACAAGTAAAC AACCTTCTTATTTTGGCATTTTTTCTTGCTAGGCAGAAAAAGCTCAATTTGGAATGAAATCAAACATGTTGGAAATGATG AAATGAAATCAAACATGTTGGAAACTAATAAGAGCAATGAACACCAGCTGAAATAGTTAGGAAAAGACATGCCACTGACT TATGGATAATAGAATCTTGTCAGCATTTTTACTTATTTTTTATGTGATGGAACAATTTACAATGTTCAATAAATACCATG GTGGAGAATCCAATAGTAATGCTATGCTTCATCAATCTATTGCAGTTTTTCCGAGCAAACAATTCTATTCACCCCTTATT CAATGGTGGACGAGCTATGATTATGAGTACTGCTACTACTGGTAATGCCACTCCTTGCTCTGGACCTAAAACAGTTGGAA GATGGTTGAAAGAGAGAAGAGAAAAGAAGAAGGAAGAAAACAGGAGCCACAATGCTCAGCTGCACGCAGCTATTTCTGTG GCTGCTGTGGCGGCTGCGGTTGCCGCCATCACGGCTGCAACAGCAGCCTCATCTAGCAAAGATGAGAAGATGGCTAATAC AGACATGGCTGTGGCTTCTGCAGCTACTTTGGTTGCTGCTCAGTGTGTAGAAGCTGCTGAAGCAATGGGAGCTGAAAGAG ACCACCTTGCTTCTGTGATTAGCTCTGCTGTGAATGTTAGATCTCATGATGATATCACAACTCTAACTGCTGCTGCTGCC ACAGGTAAGGTTTTCTGCATTCATTGAGCACTAATGTCGTACAATAATATATCAATGATTTTATTCTTATTATTATTGAG AAGATACCACTAATAAGAATCATCTTTTATACTTCATCAAAATCGATTTTAAAAGACAGAAGCTAAACCTTGCCTTCAGG ATAAGTTGTAAATGACTTTTCAAACATGCACACCAATGAAATTATTGATATTTGAGAGAATTGATTTCAAACCCAAAATC AATTCTAGTAGAAGCTAGAGAGAGTAGATTATGCGTTGAACATAATCAATTGTGAGATTTTACAATTGAGTTTCACTACA TTACCAATAAAAATCACTTTTGCATAAATGTATTCAAACATAAATCACATCACTTTCACTATAAGTCTATAGCCAATTTT ATGAAAAAACTATTGTGACAAACGCTGATCCAAACTTGCACCTGTTTTTCCTTACATTCAATACTTATACGTAGAAATTA CTCCCAGAAGCTTCTATTAAGAATTGATTTTGACTTTAAAACCAATTTTCAAATATGCACTCAAACAATTTCCCAAAATT GTTTGTGAGAAGAGTTTCCAAAGCTATTTCTCTTAAGTTAACCAAATTTTAGAGATCACTGCATAATGGTAAAGAATCAA CTATGAAGGAGCATTCATGTGAACATGTGCTGTGAGGGGGTAGTAATAGTCCTGTTTGTATTTTGTTTCCTTATATTGCC ACTTGATGGATGTGATCCTCCACATATGCAGCTCTAAGAGGGGCAGCAACTTTGAAAGCAAGAGCATTGAAGGAGATGAG GAATATTACTGCAGTGACACCACTAGAGAGAAGCATAGGGATTGGAGTGTGTGGTAAAGCAAAAAACAGTAACTCTAGCA CCAGTGATAGTGGAGAGATTATCAATGGAGAAAATTTTCTAGGTGCCTGCAACCTTGAGCTTCTTGCCAGGGGAAGTGAA TTACTCAAACGGACCCGTAAAGGTAATGTCACTTACAAATGCAGCTAACTCCCAATCTTTTCTCTCATTTTGCATAAAGA GTAAACTTCATTTTGGTGATAACTGTAGGTGATCTTCACTGGAAAGTGGTTTCTGTTTATATACATCGATCAGGCCAGGT AATATATCTTTTCTATTACTCATTAATGGAATTGGACAAATGTCCATTCATCACAATGCTTGCAACCATTTGCATTTCAG GTGATGCTGAAAACGAAAAGCAAGCATGTTGCAGGAACCATTACTAAAAAGAAAAAGGGTAAGCTTAGCCCACCATTAAC TATTATATTAGCATGTTTGGATCAGATTTTTTCTTCTCGCAATCAATTATGAAATTTAGACTGCTTACAAAAGCTTCTAC CCCATAATTGATTTTAGCTTCAAAATCAATTGTAGAAGGATTTTCGAACATGCATTGTGCTGTGTAACTTCATTTTGGTT GCATGGAAGCCCCCATAAAAGAACTAACAACTTATGATGTTAAACTTCCAGATGTTGTGTTAGATGTGAGCACAAATTTA CCAGCATGGCCAGGAAGGCATCTTTTTGATGATGGTGAAAAAAGAAGGTATTTCGGATTGAAGACAGAGTCATGGGGGGT TGTGGAGTTTGAATGTAGAAATCAAAGAGAATATGATATCTGGACTCAAGGTGTTTCAAGACTTCTTTCCATTGTTGCCC AGAGACAGAAGCAAAACAGAAAAAAGATTTGAGCTTCCAACAAGAGTCTCTTAGCTACTGCTGACAGCTGAGCTTAGTTC AAACTATATGTACTTAGTTGTATTTTGCATCTGTTAACAGGAACTGATTCTTTTTCCGGGAGACACTCAATTTCATCCTT TATGTTTTTACATGTATCAAATTAGTCTCATAAATTAATCACATATTTAAACTCTTAACATATGATAATGTTGGACATCT TAATTCATGACAGAACTAAAATATTATGAGACTATACATGATACATCATCGAGCTTTAGCTCCAAATATATGATTTGAGT TAAAGACTAACATAGTGTACAACTTGTAAATAGAGGTTAGCACACAGTCTAACTAGTATCTAGGCACATGCTAAGAAGAG CTATACATGGCCTCATTGGCTCCGACCGCATTGATTGAACGGCATTAATGCTCTCAGACCAACAATACGAGGGAAAAATA AACTGCCCTTATATTTTAACAGAGAAGTTCCTGTCTCCATTACGCAATCCTACCAGGTTCATTTCAGTCTCATGTAACCA ACTGTCGTAACGTAGATGTGAAAAACAATGCAACATGATGAAGGCACGCGTATTTACAATTCAATTCAAAATTTGATCAC TAATCAAACCATATATATTAACAGCTTCGACAATAATCCACAGGACACTACATTAACTGACAAGAATTTGTTTTCTGAAC CCCACCATCGTCCCCACAGAAAAGAAATATGTGCCCAGGAATATATAATATACAGTGATTTCAACTATCAGCGGCTCTGA AGATATTAAGTAGAGCCAGGAAGAGGTTGATGATGTCCAGATACAAGGAGACAGCAGCCCAAATGTATTCGTCGTATGAG TATCTCTTGATCAGGTTGTCTGTGTCATACACAATGTAGCCACAAAATATAATTGATGCCACGCACCCATAGATCATCAC AGAGAGCTTACCCAGTGGAAAGAGAATCTACAAAGACATGAACACAGCCATAAGAATTCAACAGAAACGATAACAAGGGC GTAATGCACATGAAGCAACAATGTCTAAAAACCTTAAATACCTGAATAAATGAAAAGACTATAAGAACAAGCACAGAACC AAACAAGAAGGGGCCAAGAAAGTTGAAATCATAGCCTCTACTTGCAGCCCAGAATGTGTAGACAGTTAGACCGATCACCA CCACAGCAGTCAATATGACAGCTTCCAGAATAACTTTCTCTGTATTCAATCAGAAAATATTAGGACCGAGAAAAAGAAGG TAATGTTGGTTGAAAAATGCAACTTTAAGACAACAAAATTGCTCAAGACAATTTTAAAAGCGAGAAAAGTCCAATCTTAT GACAAGTAAGACCTCAAATCAGTTTCTACTGGGGTTTATTTCCTCTTCCACAAAATTAGTTACATAAATACTGGCAAATC ATAATACAATCAAATCTTGCAACTCCATTCTCAAAGGAAAGGAACTAACTAGTAGGTTTAAAAATCTAACCACAGTAAAA GTTTAGCAGATAACACTTGACCCTCACCAAAATAAAATAAAATAAACCTTCACATAAAAAATCAATCCAGGACCGAGAAT GCCAACTCATGCACATAAGCATTGGTATTATTTGGTCTCAAACTATATATCAAGAATAAGAATGATCCCAATTCCTAATC TTTTTTGTCCATTGCCCAAATTAGATTGACATCAAATTCTAATTTCAACCAAGCAGACAAACTCAAGTTCAAAGTCCAAT AACTAATCCTTAAATTATCAATCTTTTATTCCAAAAAATTAACAAAAATCCCTAACACAAAAATCTCTCCAGCAAAAGAG CATGCAATGCAACCGAAGCGCACAAGCATTGGTATTTGATCAATCACAACCCACAATGATCAAAGTTTCAAGTTTCAATC CCAAATTCTATATCAAGAATATTCCTAATTCCTACTAATTCCTAATTGCATTATCTTTTTTCTATTCCCCCCAATTAGAT TGACACACACAATCAAAGTACCAATTCTCAACCCTAAATTCTGTATCAAGTAATAAATTCTAAATTTCTAATTTTCTTTT GTCCACTGTCATAGTAGATTGACGCACCAAAGTCCAAATTTCAACCAAGCAGACCAACTCAAGTTCCAAGTTCAACAACT AAACCTTAAATTCTCAATCTTCTATTTCAAAAAAATCAACATTGACGAATTAGCCCCAAAATTTGAACCGAATAACAAAC ACAACAACAGGGAAAGGCAAATTTCTCAACAACAATCAAAAGCATGAAATTTGAAGTAAAGAAATAAAAAAGAACATAGA GATGAATCATACCGCTGGTGAAGGCGCAACTCAATCCAACAACAACAGCAAGAGAAAGCGTGAAAATCGAAAGAAGAAGG TAATTGATGGGATGCCTCTGGTAATAGTAGTAAAGCGGACACAACGCTGAAATTGCAACCAAAATCAGAATCGTTAGAGA AAAAACAAACAAAGAATTCAACACTGAGTGATAGAATCTGAAGCAATTAGGATTTAAGAAACGCACTGATGAAAGGGACA AAGACGAGGACGATGTAGACAGCGAGGCCGGCGCCGGTGGTGGCGAAGAAGGTGGCGATAGGGCGAACGGTGACAACGAC GGCGCCGACGGCGATTGTGGCGAGCAACTGAATAGCGATGATGGCGTAGACTTTTCGGATGAACGACCACCGCAGTTCGG GGCTTTCGAGCATCATCGGGTACAGTGGCCTCGCTCCGCTCTCCACATCGGTTTTTCCATATCCTTGATTCCACATCTTC TTCTTTTCTCGGATTTCGCTCTGGTGAAGATTCTCGAGAAAGTGAGGGAAAACGAGAAGGAAAGTGTGAGAGAAAATTAG TTAGGGCTTGTTCACGTGGAGAGTTGACGAACCGGTTTGTTCTGTTTATGCAGGGGTCATAAATAAATAAACTGCCACTT GCGAATTTTTTTTTATTAACCAAGGTATTCCACTGCCGCACAGCCGTGAGATTAATCTCTCTCGCCCTGGTCATCTCACT AAGCGGTAGGGAG
CDS sequence (LotjaGi5g1v0170700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGATCCAAAGCTCACAATCAACTGTCACCGAAATGAGTTCCTTCCAACTAGTGCAGGCACTCAATTGCCAGAAAGCCC CAGAATACCAATGGAGTTTCTGTCAAGGTCATGGAGTGCCTCTGCTCTTGAGGTCTCTAAAGCCCTGACACCACCTCAAC CACACACACCACCTTCTTGCATAGCTTCCAAGCCTTCTAATGCTTCCTCTTGTCTCACTAATTCTATTCCTGAAGAAACT ACTTACCATTCAGAGGAGTCCTCAACAATGTGTGGGAATCAGTTCTCTTTTGCTTCCTCTGCTACTTCACAGTTTGTCCT TGAGCGCATCATGTCACAGTCCACAAGAGAGGAAGTGTCTCCATTAACATCAGGTAGACTGTCCCACAGCAGTGAACCTG TGAACGGTGGTGGTGGTTCTTTAACCGGAACAGATAGTCCTCCAATTTCTCCATCTGAGGAGTACGACGATGTTGTTAAG TTTTTCCGAGCAAACAATTCTATTCACCCCTTATTCAATGGTGGACGAGCTATGATTATGAGTACTGCTACTACTGGTAA TGCCACTCCTTGCTCTGGACCTAAAACAGTTGGAAGATGGTTGAAAGAGAGAAGAGAAAAGAAGAAGGAAGAAAACAGGA GCCACAATGCTCAGCTGCACGCAGCTATTTCTGTGGCTGCTGTGGCGGCTGCGGTTGCCGCCATCACGGCTGCAACAGCA GCCTCATCTAGCAAAGATGAGAAGATGGCTAATACAGACATGGCTGTGGCTTCTGCAGCTACTTTGGTTGCTGCTCAGTG TGTAGAAGCTGCTGAAGCAATGGGAGCTGAAAGAGACCACCTTGCTTCTGTGATTAGCTCTGCTGTGAATGTTAGATCTC ATGATGATATCACAACTCTAACTGCTGCTGCTGCCACAGCTCTAAGAGGGGCAGCAACTTTGAAAGCAAGAGCATTGAAG GAGATGAGGAATATTACTGCAGTGACACCACTAGAGAGAAGCATAGGGATTGGAGTGTGTGGTAAAGCAAAAAACAGTAA CTCTAGCACCAGTGATAGTGGAGAGATTATCAATGGAGAAAATTTTCTAGGTGCCTGCAACCTTGAGCTTCTTGCCAGGG GAAGTGAATTACTCAAACGGACCCGTAAAGGTGATCTTCACTGGAAAGTGGTTTCTGTTTATATACATCGATCAGGCCAG GTGATGCTGAAAACGAAAAGCAAGCATGTTGCAGGAACCATTACTAAAAAGAAAAAGGATGTTGTGTTAGATGTGAGCAC AAATTTACCAGCATGGCCAGGAAGGCATCTTTTTGATGATGGTGAAAAAAGAAGGTATTTCGGATTGAAGACAGAGTCAT GGGGGGTTGTGGAGTTTGAATGTAGAAATCAAAGAGAATATGATATCTGGACTCAAGGTGTTTCAAGACTTCTTTCCATT GTTGCCCAGAGACAGAAGCAAAACAGAAAAAAGATTTGA
Protein sequence (LotjaGi5g1v0170700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDPKLTINCHRNEFLPTSAGTQLPESPRIPMEFLSRSWSASALEVSKALTPPQPHTPPSCIASKPSNASSCLTNSIPEET TYHSEESSTMCGNQFSFASSATSQFVLERIMSQSTREEVSPLTSGRLSHSSEPVNGGGGSLTGTDSPPISPSEEYDDVVK FFRANNSIHPLFNGGRAMIMSTATTGNATPCSGPKTVGRWLKERREKKKEENRSHNAQLHAAISVAAVAAAVAAITAATA ASSSKDEKMANTDMAVASAATLVAAQCVEAAEAMGAERDHLASVISSAVNVRSHDDITTLTAAAATALRGAATLKARALK EMRNITAVTPLERSIGIGVCGKAKNSNSSTSDSGEIINGENFLGACNLELLARGSELLKRTRKGDLHWKVVSVYIHRSGQ VMLKTKSKHVAGTITKKKKDVVLDVSTNLPAWPGRHLFDDGEKRRYFGLKTESWGVVEFECRNQREYDIWTQGVSRLLSI VAQRQKQNRKKI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 488 | 488 | 1.0E-257 | ||
| PANTHER | 1 | 488 | 488 | 1.0E-257 | – | |
| Phobius | 1 | 218 | 218 | - | – | |
| Pfam | 24 | 333 | 310 | 3.5E-105 | ||
| MobiDBLite | 48 | 68 | 21 | - | – | |
| MobiDBLite | 116 | 149 | 34 | - | – | |
| MobiDBLite | 116 | 152 | 37 | - | – | |
| Phobius | 219 | 241 | 23 | - | – | |
| Phobius | 242 | 492 | 251 | - | – | |
| Pfam | 376 | 481 | 106 | 2.2E-39 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi5g1v0170700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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