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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0174800 |
| Transcript ID | LotjaGi5g1v0174800.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Auxin-responsive protein; TAIR: AT4G14550.1 indole-3-acetic acid inducible 14; Swiss-Prot: sp|P13089|AUX28_SOYBN Auxin-induced protein AUX28; TrEMBL-Plants: tr|A0A0B2QB67|A0A0B2QB67_GLYSO Auxin-induced protein; Found in the gene: LotjaGi5g1v0174800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:44636317..44640048) extracted from Lotus japonicus Gifu genome v1.2.
CTCTCTATTATATAATTACATTACATCATACATCATTTTCTACTTTTTTTTTTGTTCCATTGATATTCTACAAATATCAT TATTGGATAAATAATTATAGCAGCCAGCAGTGGTGTCCACTTCCAGTTCTTCCAATGAACAATCATAGGAAGGAAACACA TGACCATGTCTTCACCTTTCCCAGCAAGGTTGGAATAGTCTAGTTCACACATTTGTCCACGTGTCGCGATCCCATTGCTG GAAGAGCTGGATGTGAAAAGACAAATCGGCCCATCCATCCATGTATTAATGGCCACCCCGCCCAAAACGCAAAGGCTTCC TTCCTTCCTTCCCCCACTTCAACGTGCCTTGCCCCTATACCTTCCCCCACTCACAGTACTATTATTGCAACCAAATCCCA AAATTCTTAGAGAGAGAAAGAGAAGTTTAGAGAGAAAAAGAGTGAAAAATTCATCATATGGAGAAGATGATGGTGTTTGA GGAAACTGAGCTGAGGCTTGGCCTTGGGTTGCCTGGAAATGGAGGCACAGCAGCAGGCACTGGTACTGAAGGTGCTGCTG CAGAAGGAGCTGTGATGAGAAAGAGAGGATTCTCTGAAACTGAGTCGACTGAGACTGAAGAAACAGCAACCACTACTGTG GATCTGATGCTTAACCTTTCCCCTAAAGAAGCTTCTTCTGCTTCGGCTGCTGCTGGTGGGGCAGATCCACGTGATAAGCT TAAGACTTCTTCGCCTAAGGAGAACACCCTGCTGGTCTCTGATTCTGCCAAGCCTCCTCCTGCTAAGTAAGTAGTTAATA ATTTACCATGCATGCTTTTTTCCTTTGTCTTAAATACCATAGTGTTAGTTATGAGTCTAATCTCTCATATCAGCATCAGC GCAATAAAAAAAAATTCATTCGCAAAAGTCTGGGTTTAACCTCTCAACCACTTGTTTAAGGATGAATTAGAAAAGGGGAA AAGGTTCGGGCTAATTTAATTTTATACTTTTTACTAACTTTCATGATTTTCCATTTAATTAGCATATAAAAACAAGGATT CATGTTTGTTGCTTATATTAAAGTTATGGTTAATTATATTTGGGGATTGCCAGAGTTAGCCAAGAGGATTTTAGATGATG AGAAATTAAATGAAAATCAAAGAAATTATTACAATATAGATCATGAGTGGGAAAGGGAGAATTAATGTCAATCCTAATCT TTAATTAAACAACATATAACACTATCAACATCTTTCCTAAGCTACATTTTTATTTTATTTCTTTCTATCACATCATATCA CATTTATCACTTTCCTCTTTCTTCTCTTCATTTTTCTCTCTCTTTTTTCTACATCTTATTGGAGTAGTGTTGACCTTAAT TTCAAAGATGCTTTCATCTCTATTACAACATACCCTTTACCCATGGCTTCATATAGTTTAGCTAGTTAGTTAAACAGTTG ACAATATAACAGTTTTTTTTGTTAATTCTTAAAGTTAACTTTGACTAAATATTTATTCATGTATGTAGAATATCATATAT ATCATAATTAAGTAACTAGGACTTCTCTAGATCTCTGATTAAGCCTTTTTTATTAGATTCATTACACAACCACATGCATA CACAAACTAATTAATTCAATGAAAAAGTGATTGATTATACGAATATTGTGATGGATTGAAATGAAACTATTAATTAGGGC GCAAGTGGTGGGTTGGCCACCAGTTCGGTCGTTCCGGAAGAACATGTTTGCGGCCCAAAAGAGCAGCGGAGATCAAGAGA GCGAGAAGAACAGCAGCCCTAATGCAAGCTTTGTGAAAGTGAGCATGGATGGAGCACCTTACCTCCGCAAAGTGGACTTG AGCATGTACAAGACTTACAAAGATCTCTCTGATGCCTTAGGCAAAATGTTTAGCTCCTTCACCATTGGTAATTATTTATT TAACCACCAAATTTATCGGCACATTTATATATGTACCTTTGTTTAAATACTTTATCGTAAATGTTTAAGTAATCATCCCT TTGATACTATGAGTTTCAGAGTTCAAACCACACTCATCAAAATGAAACCCTTTTCTAATCAGTTGTTTAACACTCAGTAC GAGTATTATAGATACACTCTCTGATCACTATTATAAGCGAAAGTTAGTTTTTTAGATTTATTGAATAAATGATGTATGTG GTCAATATTTATTCAATGAATCTAAAAAATTAATTTTTACTTATAATAGTGATCAGAAGCTGTTGGGAATTAATTTGTGT TGTGTGGGGTACTTACTTGGTCTAAAAAAAAATTAAATGAGTTGAATGAGGTCATGGTGATTGATGATAACAATTAATTA TTGCTTTGTTTGATGAATTGAAGGAAATTGCGAGTCCCAAGGCATTAAGGATTTCATGAATGAGAGTAAGTTGATGGATC TTTTGAACTCCGACTATGTCCCAACCTATGAAGACAAGGATGGTGACTGGATGCTTGTCGGTGATGTACCATGGGAGTAA GTTTTCATTTCTCCACTTCAACACCCATAATTGTTCTTCTGCCTGCAATAATTACACGTACCTCATAATTTCCTCCATGT GCATCGGCATATATAAGCATATCCTTTAGTAGTAATATATTATGCTAGCTATACCAATTAATTAACCAATTTGTCTTGTT ATATTACTCATGTGGTTATCATTTGATAGTAGTAGATAGTTAGACTCTTCAAATACTAATTAATTTAGAGTTTGATTTTA TAAGTAGTGTGTATAGAAAATGATTTATCAGGAGATTTGTACTCATTTAAATGTGATTTTCGAAACTTGAGAGAATTAAT CTCATAATTGCATACTGATATACCTTGTAAAACCAAGAAAAAATATATTACTATTACTCACATATTTACTTCTTACATAT TTATTTCTTGCTGTTACTTATGATTTATTATCCTTACACATTTCTTGTTGAAACTAAAGTTTTGCATATGATAATGACTA TTTTCTTTATGGCAAGCAGGATGTTTGTTGAATCATGCAAGCGTTTACGTATCATGAAAGGAAAGGAAGCTATTGGACTC GGTTAGTACATACAACGATTAATTCAGTTACTTTTACTTCAAAAAAGAAACCCTGCTCATTAGTCATGATTCATGCATGC ACGTACAATCCTTCTATATATTCAGTCATATACACACTACTGTTAAATATCTATCTCCGTAGAGAATTGCAATGACTAGT CTATAATTTAGAAGGAAAAAAAACACATTCTAAAGTTAATTAACTTGTTTATGTATGTGTCAGCACCAAGAGCCATGGAG AAATGCAAGAACAGGAGCTAGACTAGTCGTTACAATTGCAACTGCTCAATATTCCATGTGGTCCAAGTTGACTTAGTAAC TGAATCAAGCAAGGTGAAGAAGCTGCAGCAGACACGGATGGACAAAGAAAGCAGGGTGTTAAAAATATAGTTAATTATAT TTGTGTATCATTAATATGGTTTGTTATATAATATTCCAAACAAAACTGTGAGATTAATTCTAAGTATATATTGTGAACAG AAACGATAATGACTCGATCTGAATTATGTCGCAAGACTTTATTTCTTTACTTGTTGTGTGCTTGCATAATAGTAAGCTGA TCAATAATGTGCTTGTCTGTTGTACCTATATATCGTTTGTATTTTACTTAATTTTCACCATTTTCATTCTATATGCATTC AATTTATTATTTGTATAATGTATAGTGAGAAAAATAAATTTGTATATATGGG
CDS sequence (LotjaGi5g1v0174800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGAAGATGATGGTGTTTGAGGAAACTGAGCTGAGGCTTGGCCTTGGGTTGCCTGGAAATGGAGGCACAGCAGCAGG CACTGGTACTGAAGGTGCTGCTGCAGAAGGAGCTGTGATGAGAAAGAGAGGATTCTCTGAAACTGAGTCGACTGAGACTG AAGAAACAGCAACCACTACTGTGGATCTGATGCTTAACCTTTCCCCTAAAGAAGCTTCTTCTGCTTCGGCTGCTGCTGGT GGGGCAGATCCACGTGATAAGCTTAAGACTTCTTCGCCTAAGGAGAACACCCTGCTGGTCTCTGATTCTGCCAAGCCTCC TCCTGCTAAGGCGCAAGTGGTGGGTTGGCCACCAGTTCGGTCGTTCCGGAAGAACATGTTTGCGGCCCAAAAGAGCAGCG GAGATCAAGAGAGCGAGAAGAACAGCAGCCCTAATGCAAGCTTTGTGAAAGTGAGCATGGATGGAGCACCTTACCTCCGC AAAGTGGACTTGAGCATGTACAAGACTTACAAAGATCTCTCTGATGCCTTAGGCAAAATGTTTAGCTCCTTCACCATTGG AAATTGCGAGTCCCAAGGCATTAAGGATTTCATGAATGAGAGTAAGTTGATGGATCTTTTGAACTCCGACTATGTCCCAA CCTATGAAGACAAGGATGGTGACTGGATGCTTGTCGGTGATGTACCATGGGAGATGTTTGTTGAATCATGCAAGCGTTTA CGTATCATGAAAGGAAAGGAAGCTATTGGACTCGCACCAAGAGCCATGGAGAAATGCAAGAACAGGAGCTAG
Protein sequence (LotjaGi5g1v0174800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEKMMVFEETELRLGLGLPGNGGTAAGTGTEGAAAEGAVMRKRGFSETESTETEETATTTVDLMLNLSPKEASSASAAAG GADPRDKLKTSSPKENTLLVSDSAKPPPAKAQVVGWPPVRSFRKNMFAAQKSSGDQESEKNSSPNASFVKVSMDGAPYLR KVDLSMYKTYKDLSDALGKMFSSFTIGNCESQGIKDFMNESKLMDLLNSDYVPTYEDKDGDWMLVGDVPWEMFVESCKRL RIMKGKEAIGLAPRAMEKCKNRS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 4 | 257 | 254 | 2.1E-120 | – | |
| PANTHER | 4 | 257 | 254 | 2.1E-120 | ||
| Pfam | 9 | 254 | 246 | 5.2E-83 | ||
| MobiDBLite | 71 | 92 | 22 | - | – | |
| SUPERFAMILY | 138 | 244 | 107 | 1.57E-23 | – | |
| Gene3D | 140 | 258 | 119 | 8.2E-43 | – | |
| ProSiteProfiles | 146 | 245 | 100 | 24.392 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Cellular component | Nucleus | A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. | ||
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. |
Expression pattern of LotjaGi5g1v0174800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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