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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0175900 |
| Transcript ID | LotjaGi5g1v0175900.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Signal recognition particle 9 kDa protein; TAIR: AT3G49100.1 Signal recognition particle, SRP9/SRP14 subunit; Swiss-Prot: sp|Q9SMU7|SRP09_ARATH Signal recognition particle 9 kDa protein; TrEMBL-Plants: tr|I3S8S5|I3S8S5_LOTJA Signal recognition particle 9 kDa protein; Found in the gene: LotjaGi5g1v0175900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:44900443..44904745) extracted from Lotus japonicus Gifu genome v1.2.
CTCAATATTCATGCGGAGAAGCTTGAAACGACATAGTGATTAGCGTCTAGTGTACGAAGCAGAAGACACTCAGCTACGGA TCTAAGGTGGGGTCACTCATTCCACTGAAATTCAAAGGTGGGTGCCACACCACTGGATCCTACTCTCCCCTGCGCTTCAC GAACGAACGAAACCCTCTCCGTGTGAACGATCCATCGATCGATCCAGCAATCGCCGCAAGCTGCAATGGTTTACATCACT TCCTGGGACGAGTTCGTGGATCGAACCGTTCAGTTGTACCGCGCCGATCCTGATTCTGTAATCTTCTTCCTCCTTGTTTT TCAATTTTTTTTCAATTTTCAATTTTCTGTTCTTCAATTTCGCTTCTGTTTGATCGCACAGAAAATGTAGTAACAGAAAA ATCAACACAACCAGATTCTGCAATTTTTTCAATTTTGTTCGTAATTTGTAGTTTATACACTCCGAAATTGTTTGCCCTAT CTGAAATCATTGTGGTGTTGAATTTGAGATGCAGACGCGGTATGTCATGAAGTACAGGCATTGTGATGGCAAATTGGTAC TCAAGGTCACCGATAATAAGCAGGTACGTATAATTCCTTTGTATTTTTTGTTCATTGGGGTGAATGTGGTTTCTTTCACT ATGGAATGTGATGGATTTTTAGGGTAAAGGTAGAGAAACACTAAATTGGTTTGAATTTGAAGTTTGACATTCCAAATTGT TGGTACTTTCCTTCATTTTGGTCAATAGAACCCTAGTTAGTTACTTAGCGAGATGTTGTTTACTTATCAAATTGAGTTAA GGGTGCCAATCAATGTGTGCAGTGGTGTTAGCTTTCATACAAGCTGTAGTTGTTAATACTTCTCCATATATTTCCTTTTG ATTTTTTAAATACCAATGGTCCTTTATGCTTATGGTAACTTGTAACTCTGTCATCTTCGGAGTTTCAGTTTATGTATATT GCAGTTGAGGAGTTGTGCCATTTTTATTTAGTATCCATACGTTTTAGACAAGCAAAATGATTGCTGGAAAGTCATTGTTG GTTGATGCCATTTTTACATCCTTGGGTTAATTGTCAATTGTTGAAATATACAGGATAGCATCCAATAGCAGAAAGTTAGA AATGACATCCCTGTGGGATACTATAATTTGTTCGTTGGCGGAGTTATCCTTAATAAGGATGCATGAAAGTTGAAGGTTTT GTGGGATGCTAGTTTAGCCATGAGCATGGCTGATTTATTTATTTTCAAATTTCATGAGCTATCATGATATCACGTAATTG CATGCAATATATGGAAAATAAAACATCAAAGCATAGGTGGTCTTTTGGATGACATGAATGCTTTTACTCCATGCTTGTTC AAGGTTATGATATAGGGTTCCAAATCATATGTCCCCCAATTGTGTCCCCTTTCTCTGTTTGCTCCAAAACTATTTGACAG ATCAATTATGAAATCCGCATCAGCTTCTGAGGGTGGCTAACACTGTAATGTTTTCTGTCTCATTAACTAGCCTGTCTCTG TCTCCTTTCTGAAATCTAGTTTCCAGAATTCTTTTAGAGACACTAAAATTCAATGATCGGAAAAAGTTAGCAGGGAGAAT GGAATTAGCAGAAGTTGAATTCGATGGTCACACATTTGGAATTGGTAGCGACTCTGTTAGTTGCAACTGATGAAGTCATC GGAATCAAGATCCATCGCCATCTCTTCACTTGAACTCTCACCTTCAATTGTCATCGACGAATTGGACAACCCACTGGCAG AGGAGGCATTGGGTTTGCGACGCATGGAAATCACCGTTGGAGAAACAACCTGCGATGACGGACAGTGTCGGCGACCACTG CACTTTCAGGCTATTTGGAAATCACCATTGGAGAATAACACTAATCCACGTCTTCATCTCCACAAAACAATATGTAATAA TATAAATATTTATTAATTGAAGTCCTCACTGAAAACTACAGAGATTTATTGGTTGAGATTGAGAAAATATTGATTAAGGC TCGGAATTGAGTATGGACCGAGAGGGAGAAAGAAGAGAAGGGTTTAGTTTTGTGTGTGTTTCTGTGCTGTTCATGGTCAT GGAAATTCACAGGGAGAGAAAGGAACGTGATCTGAATAAATGAAGGAAGACGATGGTGAGAGCCCATTTCTAAACGGGGA TCTGTTTTCTTTATTGGAATGAAATGAAAGACTTAGATGTGAAAGGCGCAGGGAAAACTAACTTTGATTTGAGGGATAAA ATTAAGGTGTTAGTGACTTGATAAGCTGACATGGACTTCATAATTGATGTGTCAAACAAGTAGTGGATGGACAGAGAAGG AGCCATGATTAAGGGACAGAGGATTTTGATCCATGTTATAGGGGGTCATTATAATGTTTGAACAATAGTTAAACAGTTAA AGTATTTTCCATGGTTTAGCTTCTCTGTGTAGGAATCTCTATATTTACTACTTTTACTTTTTATTTCAAAAATCTATAAC TATGAATTTTGTGCATAAGGAGCCTGTCTGCGTGGCTCCACCTGCCTCCCTCAAAATCTCCACATGAGAAGAGTAGTTAC ACACAGAATCCGGAAATTATGGTAACTAGATGGTCATTTGATGCTTATTTTTCTTTTCTCTTCATTTGACTAATAAACTG AAGAGAGAAGACAGATTAGGCTTTAGGTTACCCCATTGTAGCAACAAAATTAAGATTTATATGCATCTTATGCCCTGTTA TGACAGCATGATGCTTTCCTTAGGAATTTCCACTGGTAAAGGAATTAATTCTGTGGCCCTGATTTACCAGTGCACTATAA ATCGTTATATTCCTTTTGCCTTTGGAAAGTTGTGATGGATGAAAAGTTACCAATCATTGTTGGTTGTGATATGATCCTTT TCTGCTGACGTATCAGAGGAAGTTATCTTTACCAAGTTGAGAATCCTCATAGGTGGCCATTGAAAGCTACACATTTCAAA AGTTTTTCTTCTTTAGGTTATAAGAGGATGTATAACTGTAAGCAAGCAAGATGTAACTTCTTGCATCAATGAATATTGTC ATGAGTTCACACTTCATTTGTCTTATATAGAATATGAATTTTGTCACTTGTATGAAGCGTAAGCGTAGTACTTGCACTTG TACAAAATCTTTTATTCGCCTTTTCTCATTGCCGTCTGAGTCACATCTCACATATAAATGTTCCTAAAGTTGATTGTTAT TGTTTTTGACCAGTGTCTGAAGTATAAGACAGACCAATCACAAGAAGCTAAGAAGATGGAAAAACTGAATAATATATTCT TTACTTTGATGGCTCGGGGACCAGAAGGTAATGTCTTTTGTTATGCTTTGTTGATCAGCATATAATTAGGCACTTATTTG CAGAGGGCTATATTGGACTATTTGTATGAGATACTATTTTAAAATTATTTCCCTGTAATACTAGTAAATAGAAATCATGG GAAAGAATAAGAAGTAAGAACTAGAACCTAATGCATGAGTGTGTGTTAGTGAATATCGTATGTGCGTAATTTTTGCCTAT AATGTTCACCGGTGCTTAGAGTTAATAGCATGAACTACCAACTTCTTCAATTGTAAACTAGTGGTTCTTGGTTCCATGCT TAAAATTTGTAACAGCTCCATGGTAAAATTGATGATACATTTATGTTATTGTCTCATGTTGTCTACTGGAATGAGTTTGA GCTTTTTTTATTTAAAAGTAATGGAACTTTTATTCTAATTCTGCAGTGGATCTATCTGAAGTCACTGGGAAAGAACAAAC GGATGCACAACCAGCCAAGAGAGGAAGAGGAAGGAAGCAATAACTGATGTATCTAGCTGTTGAAATAGGCCTCATGAATC TTAGGAAATCTGTTATGATTTGATAGATTTTTACCCCATTCCTAAATCTTGCAACGTTGCCTTTGATTGCATTTACATAA TTTTGCCTACTGAATTTTACTTTCTCAAATATTAATCTGGGGTACGGTTTTGGCTACAACAAAATCACTCACATACCATT GGCAAATTGGCATTCACTTTACCACTGCTATTATTCTTCAATATTAGCTTTTAATATTGTTTTTTCTGTCGCAAATGCAA TGAAATCATTTGCTAATTTCAAACCAACAAGTGTGGGTTGGGGTTGAGGAATATATAGATCTCCTTCTGTGTTTCCATCT ACTTTTTTTTCTGTTAAATGGCTTCCAAGTTCCAATTTGGTGGTAAAGAAGTGGATTTTGACTTTCTGTTAACTGCGATT ATTTACAAACACCCAAACAGCAGGGTCTTAGCCAAACTTCTTTGGGCTCGCAGCCTCTTGTTT
CDS sequence (LotjaGi5g1v0175900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTTTACATCACTTCCTGGGACGAGTTCGTGGATCGAACCGTTCAGTTGTACCGCGCCGATCCTGATTCTACGCGGTA TGTCATGAAGTACAGGCATTGTGATGGCAAATTGGTACTCAAGGTCACCGATAATAAGCAGTGTCTGAAGTATAAGACAG ACCAATCACAAGAAGCTAAGAAGATGGAAAAACTGAATAATATATTCTTTACTTTGATGGCTCGGGGACCAGAAGTGGAT CTATCTGAAGTCACTGGGAAAGAACAAACGGATGCACAACCAGCCAAGAGAGGAAGAGGAAGGAAGCAATAA
Protein sequence (LotjaGi5g1v0175900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVYITSWDEFVDRTVQLYRADPDSTRYVMKYRHCDGKLVLKVTDNKQCLKYKTDQSQEAKKMEKLNNIFFTLMARGPEVD LSEVTGKEQTDAQPAKRGRGRKQ
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PIRSF | 1 | 97 | 97 | 1.0E-40 | ||
| PANTHER | 1 | 103 | 103 | 1.7E-44 | ||
| Gene3D | 2 | 84 | 83 | 9.7E-36 | ||
| SUPERFAMILY | 4 | 78 | 75 | 2.56E-31 | ||
| Pfam | 5 | 66 | 62 | 1.4E-11 | ||
| MobiDBLite | 81 | 97 | 17 | - | – | |
| MobiDBLite | 81 | 103 | 23 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | SRP-dependent cotranslational protein targeting to membrane | The targeting of proteins to a membrane that occurs during translation and is dependent upon two key components, the signal-recognition particle (SRP) and the SRP receptor. SRP is a cytosolic particle that transiently binds to the endoplasmic reticulum (ER) signal sequence in a nascent protein, to the large ribosomal unit, and to the SRP receptor in the ER membrane. | ||
| Molecular function | 7S RNA binding | Interacting selectively and non-covalently with 7S RNA, the RNA component of the signal recognition particle (SRP). | ||
| Biological process | Negative regulation of translational elongation | Any process that stops, prevents, or reduces the frequency, rate or extent of translational elongation. | ||
| Cellular component | Signal recognition particle | A complex of protein and RNA which facilitates translocation of proteins across membranes. |
Expression pattern of LotjaGi5g1v0175900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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