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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0176000 |
| Transcript ID | LotjaGi5g1v0176000.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | WRKY transcription factor; TAIR: AT2G30590.1 WRKY DNA-binding protein 21; Swiss-Prot: sp|O04336|WRK21_ARATH Probable WRKY transcription factor 21; TrEMBL-Plants: tr|A0A0R0KWS7|A0A0R0KWS7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0176000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:44937462..44940536) extracted from Lotus japonicus Gifu genome v1.2.
TGCTTAGGACTTTAGATTAATATATATATAATATTTATATTTATATTATATATACTCTAAAGTTGCAAGCTTTGTTTTCT TATGTCTGATGGTGGTGTGAATTCTCAAGCCAAGCAAAGTCACCTCTTTCACACCTTTCTCAATCTCAAAAACCATGACC AGAAGAAGAATCTAGGGTTTCACACCACCTAGTCCATCAAGGTCTGTGCTTTGGTGCTTTTTCTTCTTCTTTCTGGAATT TTGGGTTGAATTTTTGAAGTTGTTTATGCTGCAATCTCTCCCTTTGTTTTGATTCAGTGATTCCCCTGGTTTCCAAAAAT TGAAACTTTTTTCTATGAACTGAAGTTTTGTAACTTTGACTAGAAATTCTATTTTTGTGGCTCCTTGTCTGGTGAAAAAT GGGATTTTTTCCATCTGGGTCTTCTTATCTGTTTCATGTGGTTGAATGTGTGGTGTTTTTGTGGATAAATGGAGTGTTTT CTTTGTATTCTGGTGTGCTTGGTTTAGTTCTGCCCCTTTGATTTGGGGACTTAGTTTTTTTCCTTTCTTTTTTTGTCATA AATTTTCTATAGAAAGAGGCTAATATGGAAGAGGTTGAGCAAGCTAATAGAGCAGCTGTTGAAAGCTGCCATAGGGTTCT TAATTTGTTGTCTCAGCCAAGGGATCAGGTTCAGCATAGGAATCTAATGGTGGAAACTGGGGAAGCTGTGGTGAGGTTCA AGAAAGTTGTTTCCTTGCTTCACAATGGTTTGGGTCATGCAAGATTCAGGAAGTGTAAAACAACACCTCAAAACCCCTTT TCCCAAAGAATCTTCTTGGACAACCCAAATTGCAAAAGCAACAACCATCACTCAAAAAGTCTGCAGTTTCCCCAAACTAG TTTTCCTGACAATTCAGTTCAGGAGTTGGGCTCAAGTACCATTAGGAATTCATTGTCTCTGGTAAACCCAACTTTGGAGT TGAGCTCCAGTGGGAAAACTCCCCTTCACCTTACTACCCAACAAGCCTCATCACAGCACTATCACTTTATTCAGCAGCAG CAGCAGCAGCAAAGGTTGATGCTGCAGCAGCAACAAATGAAGCATCAAGCTGAAATGATGTTCAGAAGGAACAGTAGTGG CATAAACCTGAATTTTGACAGCACTAGCTGCACACCTACAATGTCATCTACTAGGTCTTTCATTTCCTCCTTGAGCATAG ATGGAAGTGTGGCTAACTTAGATGGAAGTTCCTTCCATTTGATAGCAGCTCCACACTCTTCTGATCAGAATTCACAGCAG CATAAAAGAAAATGTTCTGCCAGAGGTGATGATAGCAGCTTGAAATGTGGGAGCAGTTCTAGATGCCATTGCTCAAAGAA GAGGTAACACTTGCTACCTCTCTATTTCTTCTAGGTTCTGGTATTATTGTCCATGTCATTACATTAATCATTAATTTTCT GTCACTTCAGATCTTCTTGAACTCCTTTTAACATGTCATGGATAACTGTATGCATTCTCAACAGGAAACATAGAGTGAAG AGATCAATTAAGGTGCCTGCTATCAGCAACAAGCTTGCAGATATCCCTCCTGATGATTATTCATGGAGGAAGTATGGGCA GAAGCCAATCAAGGGCTCTCCTCACCCTAGGTATGTCCAAGCTTTGCTCTTTCAGATTTGATTGGTTCAAGGAACACATG AATATAATTCTTGCTAAAGTAATTTTATGAAGCTTCTGAACTACTTTTTTATGCCTGACTATTGTGCTGGTTGGTGTGCG TTTATGATTTGATCTTCTTTTCAACATTAAAAGTAAGTTGACATGATAATTATGTACTAGCTTGCAGGGATTTTTTTATT TTCCTATTTCAATCATTTTGTTTCCATTGTTTGGGTGTGTAGATGCATAATGTGTTGCTGGGAGGGTCTATTGTATTCCC TTGGCTCTTTGTTTGTAATTTGTTCTTAGTTGGTATTCGGGTTGATCTGAACATTATATACACTTGGAGTTATTGAAATG GTCCTCAAAATTTTCTATTTAATGCCCGGTTATATCTCTTCATCCTTTAGTACAAAACTTGCACTCATTCTATTCCAAGG CTTTGCTAAGTTTGAGAACCCTCACCTCTGAGCTAGCTTTTAGGATAGAGTTAGTCTTAAACGAATTTTATGACTTGAAA ACATGTTTGAGAAATTAATCTGGCATTTTAGTGGTCTTTGCAAACTCTTTCCTTTAGGTAACTTGAAAAAGATTCATGCT CTTATTTGCACAGTATTGCCCATTCAAATGAAAGATGAAGGTGAACTGCAAGTTTTATGTTTGTTGATGAAACTGACTGC AATTGCTCTTTTCTTTTCAGGGGATATTACAAGTGCAGCAGCATGAGAGGGTGTCCTGCTAGGAAGCATGTTGAGAGGTG CTTGGAAGAGCCTACTATGCTACTTGTTACCTATGAAGGTGAGCATAATCACCCTAAGATACCAACACAACCTGCAAATG CATAAACTGTATGGAGAGCTTAACCAAGACCAGGCCCATCATTCAATTTGTCAAAACCTCTATGTGATTGGCTTGAGATG TTGCTGTACATATTTAAGTGATGCAAGCAGGGATACTCTTGGTGCTGATTTTGGGGTTTAAATAGTTTGGCTAACAAGCC GTTTATTTAGTGGGTGGGGATGAGAGGATCAATTAGTTAATGAACAAGTCTGTAAAATTGGGTAGTTTCATTTTGTAAGA ACTATTTTGTCTTGAGCATGTTATAAACATTTTCAGGGTTCTCTAAATCAATGAAAACCCCTCTAAAAATGTGTTAGTTG TTTCAATTTAGTCCTCCAATCAACGGGTGGTTGGATCTTGTGCATGATTGATTTGATTTCTCTTAAGCAAGATCTCATGT TTGAGATGGAAAAAAATTTGTTGGAAGAATTAGTCGCCATCAAGTTTTGAATATTTTCTACTTGAATAGTAGTAGAGCTT CTAGCAATATGATTTTGATTGTTAGAGCATCCTTAGAGTTCATTATTTAAGTTGCTTAGCAATGTTTATGTGGAGAGAAA ATGCCACAGGATTAAAGCTACTTATAAAGAACTCA
CDS sequence (LotjaGi5g1v0176000.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAAGAGGTTGAGCAAGCTAATAGAGCAGCTGTTGAAAGCTGCCATAGGGTTCTTAATTTGTTGTCTCAGCCAAGGGA TCAGGTTCAGCATAGGAATCTAATGGTGGAAACTGGGGAAGCTGTGGTGAGGTTCAAGAAAGTTGTTTCCTTGCTTCACA ATGGTTTGGGTCATGCAAGATTCAGGAAGTGTAAAACAACACCTCAAAACCCCTTTTCCCAAAGAATCTTCTTGGACAAC CCAAATTGCAAAAGCAACAACCATCACTCAAAAAGTCTGCAGTTTCCCCAAACTAGTTTTCCTGACAATTCAGTTCAGGA GTTGGGCTCAAGTACCATTAGGAATTCATTGTCTCTGGTAAACCCAACTTTGGAGTTGAGCTCCAGTGGGAAAACTCCCC TTCACCTTACTACCCAACAAGCCTCATCACAGCACTATCACTTTATTCAGCAGCAGCAGCAGCAGCAAAGGTTGATGCTG CAGCAGCAACAAATGAAGCATCAAGCTGAAATGATGTTCAGAAGGAACAGTAGTGGCATAAACCTGAATTTTGACAGCAC TAGCTGCACACCTACAATGTCATCTACTAGGTCTTTCATTTCCTCCTTGAGCATAGATGGAAGTGTGGCTAACTTAGATG GAAGTTCCTTCCATTTGATAGCAGCTCCACACTCTTCTGATCAGAATTCACAGCAGCATAAAAGAAAATGTTCTGCCAGA GGTGATGATAGCAGCTTGAAATGTGGGAGCAGTTCTAGATGCCATTGCTCAAAGAAGAGGAAACATAGAGTGAAGAGATC AATTAAGGTGCCTGCTATCAGCAACAAGCTTGCAGATATCCCTCCTGATGATTATTCATGGAGGAAGTATGGGCAGAAGC CAATCAAGGGCTCTCCTCACCCTAGGGGATATTACAAGTGCAGCAGCATGAGAGGGTGTCCTGCTAGGAAGCATGTTGAG AGGTGCTTGGAAGAGCCTACTATGCTACTTGTTACCTATGAAGGTGAGCATAATCACCCTAAGATACCAACACAACCTGC AAATGCATAA
Protein sequence (LotjaGi5g1v0176000.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEEVEQANRAAVESCHRVLNLLSQPRDQVQHRNLMVETGEAVVRFKKVVSLLHNGLGHARFRKCKTTPQNPFSQRIFLDN PNCKSNNHHSKSLQFPQTSFPDNSVQELGSSTIRNSLSLVNPTLELSSSGKTPLHLTTQQASSQHYHFIQQQQQQQRLML QQQQMKHQAEMMFRRNSSGINLNFDSTSCTPTMSSTRSFISSLSIDGSVANLDGSSFHLIAAPHSSDQNSQQHKRKCSAR GDDSSLKCGSSSRCHCSKKRKHRVKRSIKVPAISNKLADIPPDDYSWRKYGQKPIKGSPHPRGYYKCSSMRGCPARKHVE RCLEEPTMLLVTYEGEHNHPKIPTQPANA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 348 | 348 | 2.4E-135 | – | |
| PANTHER | 1 | 348 | 348 | 2.4E-135 | – | |
| MobiDBLite | 223 | 243 | 21 | - | – | |
| Pfam | 234 | 279 | 46 | 3.5E-17 | ||
| Gene3D | 272 | 343 | 72 | 1.8E-29 | ||
| ProSiteProfiles | 276 | 342 | 67 | 29.803 | ||
| SUPERFAMILY | 279 | 341 | 63 | 9.15E-27 | ||
| SMART | 281 | 341 | 61 | 1.2E-37 | ||
| Pfam | 283 | 340 | 58 | 2.5E-26 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA-binding transcription factor activity | A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units, and include bacterial operons. | ||
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. | ||
| Molecular function | Sequence-specific DNA binding | Interacting selectively and non-covalently with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding. |
Expression pattern of LotjaGi5g1v0176000.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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