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LotjaGi5g1v0176200.1

Overview

Field Value
Gene ID LotjaGi5g1v0176200
Transcript ID LotjaGi5g1v0176200.1
Lotus japonicus genome version Gifu v1.2
Description F-box/LRR protein; TAIR: AT4G05460.1 RNI-like superfamily protein; Swiss-Prot: sp|Q9M0U9|SKI19_ARATH F-box protein SKIP19; TrEMBL-Plants: tr|A0A072UZ00|A0A072UZ00_MEDTR F-box/LRR protein; Found in the gene: LotjaGi5g1v0176200
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr5:44950189..44955421) extracted from Lotus japonicus Gifu genome v1.2.

ATTTCTTTCTCTATATCCTCCCCTTTCTCTCCTCATCCTCCTCATCCTCATCCTTATCCTCATTCCATCCTCATCCTCCT CCCCCCCCTCTCTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCGA ACTTTCCCTCATCTTCCTGATCTTTCCCTATCACCCTTTGTCCAGAAACCCTAAATGTAACCCTGCACTTTGCATTGCTT CGGTGGATACAACATTCGTAACGATCTTTGATTACATCTTCTCTATCATCGCAATCGGCGTCTTCATCTTCAACGCTATC AGGTACAAGTTTTGTTTCCTTTTTTCCATTTTCATTATTCTCATGTTTTGTTTTATTTAGATAATATGTAAAGTAGAATT TACAACACTCTCTCTCTCTTTCTCTAACTTTACCTCATCTTCTTGATCTCTCCCTATCGCCCTTTGTCCAGAAACCCTAA ATGTAACCCTGCACTTTGCATTGCTTCGGTGGATACAACATTTGTAGCGATCTTTGATTACATCTTCTCTATCATCGCAA TCGGCGTCTTCATCTTCAAAGCTATCAGGTACAAGTTTTTTTTTCCTTTTTTCCATTTCTGTTTTTTTCCATTTTCATTA TTCTCATGTAAAGTAGAATTTACATCACTCTCTCTCTCTCTCTCTCTCTGTCTCTCTCTCTCTCTAACTTTACCTTATCT TCCTGATCTAATCGCCCTTTGTCCAGAAACCCTAAATGTAACCCTGAGCTTTGCATTGCTTCAGTGGATTCAACATTTGT AGAGATCTTTGATTACATTTTCTCTATCATCGCAATCAGACATTCATCTTCAACGTTATCAGGTACAAGTTGTGTTTCCT TTATTCCATTTATGTTTTTTTCATTTTTATTATTCTCATGTTTGATTTCATTTAGATAATATGTAAAGTAGAATTTGCAT CACTCCTAGTTGCCTAGTCAATGCTGCAATTAATGTTCTCCGAATAACTTCCAAGAAACTCAATAGGTAAATTGGCGATG CATTTATACATAAGCTTTTATTTTGTTTTAAATGTTTTTGATTCATTGCACTTTTTAATTTTGTTTTTCTATTAAAACAT ATGCTAGTGCTTTGCTAAAAATAATCTTTGATATAATGGAGACTAGGATGTACCTTTTTTATTTTGCTCCACAAGTGCAC TAAGGTGCATTTTGACCAAATAAATCTTCTTTCTCGCTCCCACTCTACCCTTCCTTCCTCCCACTCTACTTCTTCCAATA TGCTCCTCGCTCCTTCATCTTCCTCGCCCCAAATCATCCACCATCAATCTACCAAGCCTTCTTCAAATCGGACAATAACT CATCACCATGAAATCGATGCTTACAACCTTCACCATCGATATCTACGCAGCCTCCTTCAAATCCACCAACAACCCATCAC TTCTACTTCTCTTCCTCCTCCTTCAACCTCCATTAGCCACAACCTCCACTGCCACCCACCACGAGAACCACCACCGCTCA ACCCTCACTTTAAGCCTTCAACCATCACCCAATCATCATCCTGCGCAAACCCGCAGTTATGCCCAAACCAAAAGCATTCT TCAACAAATTATTCATCTAAAAACATAGGAGCAATCTGATAAAGGAGAAACCTTTCTCGTTTAAGGAGTGGAAACTTAGA AACAAAGGGGAGAAAAGGAGAGAATGTTAAAACCATTTTTGTCCATACTCTCTACTTCTACTCTTATTCCTAAAGCATAT ATGGCTTGAAGAAGGATTGGTTGCAGTTTAAAGATTGTCGTCGTGGGTTGAAAAAGTGGTGTGGAGATTGTAATGTGGCG GTGATATTTGGGAGTGAGAGAAAAAAGCTTTTTATGGTATCACAATAACCCTTTTAGTGCAAATTCAATCCTAGATTTAA AGTAATGTGTAGACTAGACTCTTAATTCTAATTAAATAAGAAAATAAGTCTATTTAAGAAGTAATCTAAATTAGCTAAAA TAAGATCACGATATGATAAGACACTCTAAGATATTACAATGTATCTTCATATTCTAACACTCTCCTCAAATTTAAGCTAA CTAAGCTTAAACCTTCTCACAAATATAACCTTTAGAAAAAAAGTAAAAAGTAATAAGTCTGCATTGCCTTTGTCATTTCT TCCATTGTCATTTCCATACCCATAGAGAAGAGGAGAAACCAAAGAGAAAAGAATATAACTCATTGTCATTGTGAACCACC AATCTGCGTCTCGATCAAGAACAACACAATTCAAAGACACCATACCTCTATTACCAATATAGAGATAATCAACCTTTTTT TATGCTTCAGGACACCATAACAAATATTCTAGAGTATATGGCGGTGGTTTTCCAAAGTTGAAGTCGTCGGAACCCATGGG ATGACACGCCACCTTGTGCCATTATCAAGGAAAGGACACCTCCGCAATGAACCTTGCGTCGCCTTTGGGAGAAGGGCATG GCCTTACACTGTCATGGGAAGGAGGGTTCGACACAAACATTGCACTATCGTGAGTAGACGGAGAGCGAAAGAGATAGATA GATAGATACAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGGGGGGGGGAGGAGGGACCATGTCCTTGCAC GGTCGGGGAAGGCATTGCTGCCATCTAGCACTGTTGGACTAGCACAGTGGTTATAGGAAGCCATTGTTAGGGAAACGAAA AGAGTTGAAGAGACAGAGAAAATGAGACATTTATTTTTTAGGGGAGAAGTGATCGAACCTACACTCTAAAGTTGGATCCA TGAAATTTGTTTCAAGATCAAACCTACTCTTGATGTCATGTTGAGTGAAGCAATGCGAAAAAAAAGAGGGAGAAGAAAAA TAGAGAAGAGAAGTGGAATTGCGCTTAAAAGATAAAATTCTTACACATATTTCTAGTAATGGGTAGACTTATAATCATAA TTAAATAACAAAATAAATCAATTTAAGCAATAATTTAATTACGTAAAGTAAAATCAAGATATGAGAAGATAGTCTATGAT ATGATTAAGTTGTTATAAGATATCTTTTTCATATTCTAACAGGTACTCATCAATTAAAACATATGTTTATCATAACACAA TGACAATAACTATTATTATTTATAAACAGAATTATCAATTGTTTTGTTTGCAGGATGACTTCTTGTTCAAGAGTAGTGAA AGAAGCGAATGAGGAGAGCACTGAGAGGCCAAACTGGCTTGAACTTCCTAAAGAAGTGACTTCAAATATATTTCAAAAAC TTGGTGCGTTGGAAGTTTTAACTAGTGCGCGCCAAGTTTGCTCTCTATGGTGGAATATCTCTAAGGAGCCTCTCATGTGG CGTACCATTGACCTGACCAAACCCCCACACTATCCACAACCAACATTAGTGAATCTTTGCTGCTATGCCATTGAACAAAG TTGTGGTCATTTAGAAGACATTAGTATTGAGTTTTTTGCCACCGACAAAGTCCTGAAATGCATCGCTAACAAGTAAGGCT TGTTATCATTTTCATTTGGCCCGCATCCATTTTTTATGGTTGGGATGAATTATGATAGTTTTATCTATTCTCATTTTTAA ATATTGAAATAGTAAATACACAAATCATACAACTCATTAATCTCATTTTTAAATACTAAAATAGTAGAGACACAACTCAT ACACCTCCCAACGATCATTTATCTTTTTTAATCTTAATTTCTCACTTTTTTTTATTTGGGATGTCTACACAGTTCATGAA GTGTCTACTAGACATTGTCCTAGTTTTATATACCAAAATATATTTTTTAATCTAGCACATGTATCATCATCTACAAAAGA CAATACATTTTTTTTGAAAACAGAACAAATATGATTTATTAACTGGAATGACAAGATGTACATTGCTTGGATTACAGTTT AAAAACAAACTACTGTAATCCACCTCTTAGGCGAGTAGACAAAGCAAATAAGTCTCATTAAAACATTACAAGGGAAAACC CAGCGGGAAAAAAACCCTAGTAAGAAAAAGAGTACCCAAATGCTAAGCCACTAATTAGCCTATCTCATGACAATCACAAC TACAACTTTCTCATAATACATCATTTGTTACCATGTGAATGAATAAAATTATCTTCCATCCTCACAGTAGCGTCCCATAT AGCAACAAACTAGCCATACCATGTGCATACCAAGCTTTCTCTCAGTGTATACACCACTAACTGTTCCACCACTACAAGAG TACCCCGTTACAACAACAAGAACAACACGAGATTAAAAACAATACATTTTATTTTCTATGCTTGCTACCATATTTTTCTT TATTTTTCAGTGATTGGACAATGATCATTTATATTTTTATTTATTTATTTTGAAAAAATAGCATGTATAAATTTTAGTGA CAACTCAATCATTATTATAATTATGTATTTGGTATCATAGTTTAGTTTAATCAAGTTAGCTTTTATTTGTTTCTTTGTTT TTTTTCAAATTTACAGTGGAAGTCACCTACGACGAATGAGGCTTGTAAAATGTTGGGCAGTTTCAAATAAAGGATTGCGA GAGGCTGTAATCAAGCTTCCATTGCTGGAGGAGTTTGAAATTTCATTTAATAACGTATTATATGATACCATTGCAGTTAT GGGTCAATTTTGCCCACTTTTGAAAGTGTTGAAATTAAATATGTGCCCATACAAACACTTCAAGTATGATGATGAGGCAT TAGCTATTGCAAGAAACATGCCCAACCTACGTCATCTCCAACTTATGGGAAACTGGCTCACAAATTATGGCTTGATTTTC ATTCTTGACAGTTGTCTTCATCTTGAATCTCTGAATCTCAAGGCCTGTAAGAATATTGACTTGAGCGGAAGTTTGGGGGA AAGGTGTTATAAGCAAATCAGAGAGGTACATTTTTCAAAAGACTCAAGTGATCGTGAGGTTGAAGAGGCATATCATGGCA TGGTCTATTTCAATATTTAGTTGTGTTGATTATATGTTCATATCTGAAGTGTGGACCACCTGGTGGTACCGTTCCATATG ACATTTAATGCTTTTCTTGCAAGAGACTTGGTATTTCTTTTGAATGGCATGGTATTTTCATTTTTGTAATAGTTAACTTA AGTTGAGATATAATTTCAAACTTATTAGTAGCTAGATGCTTTATTAAGATGATTTAAGTTTTATTTTTCTTTTGAATCTC ATTGGCTTCAATGTGGTATGTTAATGTGTGAAG
Download Genomic Sequence

CDS sequence (LotjaGi5g1v0176200.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGACTTCTTGTTCAAGAGTAGTGAAAGAAGCGAATGAGGAGAGCACTGAGAGGCCAAACTGGCTTGAACTTCCTAAAGA AGTGACTTCAAATATATTTCAAAAACTTGGTGCGTTGGAAGTTTTAACTAGTGCGCGCCAAGTTTGCTCTCTATGGTGGA ATATCTCTAAGGAGCCTCTCATGTGGCGTACCATTGACCTGACCAAACCCCCACACTATCCACAACCAACATTAGTGAAT CTTTGCTGCTATGCCATTGAACAAAGTTGTGGTCATTTAGAAGACATTAGTATTGAGTTTTTTGCCACCGACAAAGTCCT GAAATGCATCGCTAACAATGGAAGTCACCTACGACGAATGAGGCTTGTAAAATGTTGGGCAGTTTCAAATAAAGGATTGC GAGAGGCTGTAATCAAGCTTCCATTGCTGGAGGAGTTTGAAATTTCATTTAATAACGTATTATATGATACCATTGCAGTT ATGGGTCAATTTTGCCCACTTTTGAAAGTGTTGAAATTAAATATGTGCCCATACAAACACTTCAAGTATGATGATGAGGC ATTAGCTATTGCAAGAAACATGCCCAACCTACGTCATCTCCAACTTATGGGAAACTGGCTCACAAATTATGGCTTGATTT TCATTCTTGACAGTTGTCTTCATCTTGAATCTCTGAATCTCAAGGCCTGTAAGAATATTGACTTGAGCGGAAGTTTGGGG GAAAGGTGTTATAAGCAAATCAGAGAGGTACATTTTTCAAAAGACTCAAGTGATCGTGAGGTTGAAGAGGCATATCATGG CATGGTCTATTTCAATATTTAG
Download CDS Sequence

Protein sequence (LotjaGi5g1v0176200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MTSCSRVVKEANEESTERPNWLELPKEVTSNIFQKLGALEVLTSARQVCSLWWNISKEPLMWRTIDLTKPPHYPQPTLVN LCCYAIEQSCGHLEDISIEFFATDKVLKCIANNGSHLRRMRLVKCWAVSNKGLREAVIKLPLLEEFEISFNNVLYDTIAV MGQFCPLLKVLKLNMCPYKHFKYDDEALAIARNMPNLRHLQLMGNWLTNYGLIFILDSCLHLESLNLKACKNIDLSGSLG ERCYKQIREVHFSKDSSDREVEEAYHGMVYFNI
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR38926:SF2
8 249 242 1.7E-82 –
PANTHER
PTHR38926
8 249 242 1.7E-82 –
SUPERFAMILY
SSF81383
9 77 69 1.96E-11
IPR036047
Gene3D
G3DSA:3.80.10.10
14 272 259 2.5E-35
IPR032675
ProSiteProfiles
PS50181
18 65 48 10.107
IPR001810
Pfam
PF12937
21 67 47 4.6E-8
IPR001810
SUPERFAMILY
SSF52047
82 234 153 6.67E-20 –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005515
Molecular function Protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi5g1v0176200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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