Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

LotjaGi5g1v0176300.1

Overview

Field Value
Gene ID LotjaGi5g1v0176300
Transcript ID LotjaGi5g1v0176300.1
Lotus japonicus genome version Gifu v1.2
Description F-box/LRR protein; TAIR: AT4G05460.1 RNI-like superfamily protein; Swiss-Prot: sp|Q9M0U9|SKI19_ARATH F-box protein SKIP19; TrEMBL-Plants: tr|A0A072UZ00|A0A072UZ00_MEDTR F-box/LRR protein; Found in the gene: LotjaGi5g1v0176300
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr5:44967784..44973012) extracted from Lotus japonicus Gifu genome v1.2.

CCCATTTCTTTCTCTATATCCTCCCCTTTCTCTCCTCATCCTCATCCTTATCTTCATTCCATCCTCATCCTCATCCTCCT CCTCCTCCTCTCTCTCTCTCACTCTATCTCTCTCTCACTCTATCTCTCTCTCTCTCTCTCTCTCTCTCGAACTTTCCCTC ATCTTCCTGGTCTTTCCCTATCACCCTTTGTCCATAAACCCTAAATGTAACCTTGCACTTTGCATTGCTTCGGTGGATAA AACATTCGTAGCGATCTTTAATTACATCTTCTCTATCATCGCAATCGGCATCTTCATCTTCAACGCTATCAGGTACAAGT TTTGTCTTTTTTTTTTTCCATTTCTGTTTTTTCCATTTTCATTAATCTCATGTTTTGTTTTATTTAGATAATATGTAAAG TAGAATTTACATCACTCTCTCTCTCTCGTTCTCTAACTTTACCTCATTCTTCCTGATCTCTCCCTATCGCCCTTTGTCCA GAAACCCTAAATGTAACCCTGCACTTTTCATTGCTCCGGTGGATACAAAATTTGTAGCGATCTTTGATTACATCTTCTCT ATCATCGCAATCGGCGTCTTCATCTTCAACGCTATTAGGTATAAGTTTTGTTTCCTTTTTTTCCATTTCTGTTTTTTCTA TTTTCATTATTCTCATGTTTTGTTTTATTTAGATAATATGTAAAGTAGAATTTACATCACTCACTCACTCACTCTCTCTC TCTCTCTCTCTCTCTAACTTTACCTTATCTTCCTGATCCCATCGCCCTTTGTCCATAAACCCTAAATGTAACCCTGAGAT TTGTATTGCTTCAGTGGATTCAACACTCGTAAAGATCTTTGGTTACATTTTCTCTATCATCGCAATCGGGCATTCATCTT TAACGTTATCAGGTACAAGTTGTGTTTCCTTTATTCCATTTATGTTTTTTTTTTCATTTTCATTATTCTCATGTTTGATT TCATTTAGATAATATGTAAAGTAGAATTGACATCACTACTAGTTGCCTAGTCAATGCTGCAATTAATATTCTCCAAATAA TTTCCAAGAATCTCATTAGGTACGCTGGGGATGCATTTATACATAAGCTTTTATTTTGTTTTAAATGTTTTTGATTCATT GCACTTTTTAATTTTGTTTTTCTATTAAAACATATGCTAATGTTTTTCTAAAAATAATCTTTGATATAATGGAGACTAGG ATGTACCTTTTTTATTTTGCTCCACAAGTGTACTAAAGTGCATTTTGACCAAATAAATCTTCTCTCTCGCTCCCACTCTA CCCTTCCTTCCTCCCACTCTACTTCTTCCAATATGCTCCTCGCTCCTTCATTTTCCTCGCCCCAAATCATCCACCATCAA TCTACTCATCCTTCTTCAAATCCCGCAATAACTCATCACTGTGAAATCGATACTTACAACCTTCACCATCGATATCTACG CAGCCTCCTTCAAATCCACCAACAACCCATCACTTCTCCTTCTCTTCCTCCTCCTTCAACCTCCATTAGTCACAACCTCC ACCACCACCCACCACGAGAACCACCACCGCTCAACCCTCACTTTAAGCCTTCAACCATCACCCAATCATCATCTTGCGCA AACCCGCAGTTATGCCCAAACCAAAAGCATTCTTCAACAAATTATTCATCTATAAACATAGAAGCAATCTGATAAAGGAG AAACCTTTCTCTTTTAAGGAGGGGAAACTTAGACACAAAGGGGATAAAGGGAGAGAATGTCAAAACCATTTTTGTCCATA CTCCCTACTCCTGCTCTTGTTCCTGAAGCATATATGGCTTGAAGAAGGATTGGTTGCAGTTTGAAGATTGTCGCTGTGGG TTGAAAAAGTGGTGTGGAGATTGTAATGTGGTGGTGATATTTGGGAGTGAGAGAAAAGATCTTTTGATGGTATCACAATA ACCCTTTTAGTGCAAATTCAATCCTAGATTTAAAGTAAAGTGTAGACTCTTAATTCTAATTAAATAAGAAAATAAGTCTA TTTAAGAAGTAATCTAAATTAGCTAAAATAAGATCACGATATGATAAGACACTCTAAGATATTACAATGTATCTTCATAT TCTAACACTCTCCTCAAATTTAAGCTAACTAAGCTTAAACCTTCTCACAAATATAACCTTTAGAAAAAAAGTAAAAAGTA ATAAGTCTGCATTGCCTTTGTCATTTCTTCCATTGTCATTTCCATACCCATAGAGAAGAGGAGAAACCAAAGAGAAAAGA ATATAACTCATTGTCATTGTGAACCACCAATCTGCGTCTCGATCAAGAACAACACAATTCAAAGACACCATACCTCTATT ACCAATATAGAGATAATCAACCATTTTTTATGCTTCAGGACACCATAACAAATATTCTAGAGTATATGGCGGTGGTTTTC CAAAGTCACGCCACCTTGTGCCATTATCAAGGAAAGGACACCCCCGCAATGAACCTTGCGTCGCCTTTGGGAGAAGGGCA TGGCCTTACACCGTCGTGGGAAGGAGGGTTCGACACAAACATTGCACTATCGTGAGTAGACGGAGAGCGAAAGAGATAGA TAGATAGATACAAAGAGAGAGATAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGGGGGGGGACCATGTCCTTGCACGG TCGGAGAAGGCATTGCTGCCATCTAGCACTGTTGGACTAGCACAGTGGCTATAGGAAGCCATTGTTAGGGAAACGAAAAG AGTTGAAGAGACAGAGAAAATGAGGCATTTATTTTTTAGGGGAGAAGTGATTGAACCTACACTCTAAAGTTGGATCCATG AAATTTGTTTCAAGATCAAACCTACTCTTGATGTCATGTTGAGTGAAGCAATGCGAAAAAAAAGAGGGAGAAGAAAAATA GAGAAGAGAAGTGGAATTGCGCTTAAAAGATAAAATTCTTACACATATTTCTAGTAATGGGTAGACTTATAATCATAATT AAATAACAAAATAAATCAATTTAAGCAATAATTTAATTACCTAAAGTAAAATCAAGATTTGAGAAGATAGTTTATGATAT GATTAAGTTGTTATAAGATATCTTTTTCATATTCTAACAGGTACTCATCAATTAAAACATATGTTTTATCATAACACAAT GACAAGAACTATTATTATTTATAAACATAATTATCAATTGTTTTGTTTGTAGGATGACTTCTTGTTCAAGAGTAGTGAAA GAAGCGAATGAGGAGAGCGCTGAGAGGCCAAACTGGCTTGAACTTCCTAAAGAAGTGACTACAAATATATTTCAAAAACT TGGTGCGTTTGAAGTTTTAACTAGTGCGCGCCAAGTTTGCTCTCAATGGTGGAACATCTCTAAGGAGCCTCTCATGTGGC GCACCATTGACTTGACCAAACCCCGTCACTATCCACAACCAACATTAGTGAATCTTTGCTGTTATGCCATTGAACAAAGT TGTGGTCATTTAGAAGACATTAGTATTGAGTTTTTTGCCACCGACAAAGTCCTGAAATGCATCGCTAACAAGTAAGGCTT GTTATCATTTTCATTTGGCTTGCATCCATTTTTTATGGTTAGGATGAATTATGATAGCTTTATCGATTCTCATTTTTAAA TATTGAAATAGTAAATACACAAATCATACAACTCATTAATCTCATTTTTAAATACTAAAATAGTAGAGACACAACTCATA CACTTTTTTTTTTTAATTTGGGATGTCTACACAGTTCATGAAGCGTCTACTAGACATTGTCCTAGTTTTATATACCAAAA TATATTTTTTAATCTAGCACATGTATCATCATCTTCAAAAGACAATACATTTTTTTTTTGAAAACAGAACAAATATGATT TATTAACTGGAATGACAAGATGTACATAGCTTGGATTACAATTTAAAAACAAACTACTGTAATCCCCCTCTTAGGCGAGT GGACAAATCAAATAAGTCTCATTAAAACATTACTAGGGAAAACCCAGTGGGAAAAAAATCCTAGTAAGAAAAAAGAGTAC CATAATGCTAAGCCACTAATTAGCCTATCTCATGACAATCACAACTACAACTTTCTCATAATACATAATTTGTTACCATG TAAATGAGTAAAATTATCTTCCATCCTCACAGTACCGTCCCATATAGCAACAAACTAGCCACACCATGTGCATACCAAGC TTTCTCTCAGTATATGCACCTCTAACCGTTCCAACACTACAAGAGTACCCCGTTACAGCAACAAGAACAACACGGGATTA AAAACAATACATTTTATTTTCTATGTTTGCTAACTTATTTTTCTTTATTTGTCAGTGATTGGACAATGATCATTTATATT TATATTTTTTTATTTTTAAAAAATAGCGTGTATAAATTTTAGAGACAACTCAATCATTATTATAATTATGTATTTGGTAT CATAGTTTAGTTTAATCAAGTTAGCTTTTATTTGTTTTTTTTTTCTTTCAAATTTACAGTGGAAGTCACCTACGACGAAT GAGGCTTGTAAAATGCTGGGCAGTTTCAAATACAGGATTGCGAGAGGCTGTAATCAAGCTTCCATTGCTGGAGGAGTTTG AAATTTCATTTAATAACGTATTATATGATACCATTGCAGTTATAGGTCAATTTTGCCCACTTTTGAAAGTGTTGAAATTA AATATGTGCCCATACAAACGCTTCAAGTATGATGATGAGGCATTAGCTATTGCAAGAAACATGCCCAACCTACGTCATCT CCAACTTATGGGAAACTGGCTCACAAATTATGGCTTGATTTTCATTCTTGACAGTTGTCTTCATCTTGAATCTCTGAATC TCAAGGCTTGTAAGAATATTGACTTGAGCGGAAGTTTGGGGGAAAGGTGTTATAAGCAAATCAGAGAGGTACATTTTTCA AAAGACTCAAGTGATCGTGAGGTTGAAGAGGCATATCATGGCATGGTCTATTTCAATATTTAGTTGTGTTGTTAAATGTT GATTATATGTTCATATCAGAAGTGTGGATCACCTGGTACCGTTCCATATGACATTTAATGCTTTTCTTGCAAGAGACTTG GTATTTCTTTTGAATGGCATGGTATTTTCATTTTTGTAATAGTTAAATTAAGTTGAGATATATTTAAAACTTATTAGTAG CTAGATGCTTTATTAAGATGATTTAAGTTTTATTTTTCTTTTGAATCTCATTGGCTTCAATGTGGTATGTTAATGTGTGA ATGTTCTTTTTTTATTCTTTCTTAGGAAC
Download Genomic Sequence

CDS sequence (LotjaGi5g1v0176300.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGACTTCTTGTTCAAGAGTAGTGAAAGAAGCGAATGAGGAGAGCGCTGAGAGGCCAAACTGGCTTGAACTTCCTAAAGA AGTGACTACAAATATATTTCAAAAACTTGGTGCGTTTGAAGTTTTAACTAGTGCGCGCCAAGTTTGCTCTCAATGGTGGA ACATCTCTAAGGAGCCTCTCATGTGGCGCACCATTGACTTGACCAAACCCCGTCACTATCCACAACCAACATTAGTGAAT CTTTGCTGTTATGCCATTGAACAAAGTTGTGGTCATTTAGAAGACATTAGTATTGAGTTTTTTGCCACCGACAAAGTCCT GAAATGCATCGCTAACAATGGAAGTCACCTACGACGAATGAGGCTTGTAAAATGCTGGGCAGTTTCAAATACAGGATTGC GAGAGGCTGTAATCAAGCTTCCATTGCTGGAGGAGTTTGAAATTTCATTTAATAACGTATTATATGATACCATTGCAGTT ATAGGTCAATTTTGCCCACTTTTGAAAGTGTTGAAATTAAATATGTGCCCATACAAACGCTTCAAGTATGATGATGAGGC ATTAGCTATTGCAAGAAACATGCCCAACCTACGTCATCTCCAACTTATGGGAAACTGGCTCACAAATTATGGCTTGATTT TCATTCTTGACAGTTGTCTTCATCTTGAATCTCTGAATCTCAAGGCTTGTAAGAATATTGACTTGAGCGGAAGTTTGGGG GAAAGGTGTTATAAGCAAATCAGAGAGGTACATTTTTCAAAAGACTCAAGTGATCGTGAGGTTGAAGAGGCATATCATGG CATGGTCTATTTCAATATTTAG
Download CDS Sequence

Protein sequence (LotjaGi5g1v0176300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MTSCSRVVKEANEESAERPNWLELPKEVTTNIFQKLGAFEVLTSARQVCSQWWNISKEPLMWRTIDLTKPRHYPQPTLVN LCCYAIEQSCGHLEDISIEFFATDKVLKCIANNGSHLRRMRLVKCWAVSNTGLREAVIKLPLLEEFEISFNNVLYDTIAV IGQFCPLLKVLKLNMCPYKRFKYDDEALAIARNMPNLRHLQLMGNWLTNYGLIFILDSCLHLESLNLKACKNIDLSGSLG ERCYKQIREVHFSKDSSDREVEEAYHGMVYFNI
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR38926
9 249 241 3.8E-83 –
PANTHER
PTHR38926:SF2
9 249 241 3.8E-83 –
SUPERFAMILY
SSF81383
9 75 67 1.57E-11
IPR036047
Gene3D
G3DSA:3.80.10.10
14 272 259 1.2E-36
IPR032675
ProSiteProfiles
PS50181
18 65 48 10.716
IPR001810
Pfam
PF12937
21 67 47 5.5E-9
IPR001810
SUPERFAMILY
SSF52047
82 234 153 3.34E-20 –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005515
Molecular function Protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
Subterm of

Genome browser

Expression data

Expression pattern

Expression pattern of LotjaGi5g1v0176300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…