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LotjaGi5g1v0177400.1

Overview

Field Value
Gene ID LotjaGi5g1v0177400
Transcript ID LotjaGi5g1v0177400.1
Lotus japonicus genome version Gifu v1.2
Description F-box/LRR protein; TAIR: AT4G05460.1 RNI-like superfamily protein; Swiss-Prot: sp|Q9M0U9|SKI19_ARATH F-box protein SKIP19; TrEMBL-Plants: tr|A0A072UZ00|A0A072UZ00_MEDTR F-box/LRR protein; Found in the gene: LotjaGi5g1v0177400
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr5:45147384..45152504) extracted from Lotus japonicus Gifu genome v1.2.

TTTTTTTCTCTATATCCTCCCCCTTTCTCTCCTCATCCTCATCTTGATCCTCCCCATCCTCAACCTCCTCCTCCTCCTCC TCCTCATTTCTCTCTCTCTCTCTCTCATCTTCTTGATCTCTCTATCGCCCTTTGTCCAAAAACCCTAAATGTAACCCTGA ACTTTACATTGCTTCGGTGGATACAACATTCGTTACGATCTTTGATTACATCTTCTCTATCATCGCAATCGGCGTCTTCT TCTTCTTCAACGCTATCAGGTACGAGTTTTGTTTCCTTTTTCCATTTCTGTTTTTTTTTTTCATTTTCACTATTCTCATG TTTGATTTCATTTAGATGATATGTAAAGTAGAATTTACTTCACTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT AACATTACCTGATCTTCCAAATCTCTCCCTATCGCCCTTTGTCCAAAAATCCTAAATGTAACCCTGAAATTTTCATTGCT TTGGTGGATACAACATTTGTAGAGATCTTTGATTACATTTTCTGTATCATCGCAATCGGCGCCTTCATCTTCAACGCTAT CAGGTACGAGTTTTGTTTCCTTTTTTCCATTTCTGTTTTTTTTTCATTTTCATTATTCTCATGTTTGATTTTATTTAGAT AATATGTAAAGTAGAATTTACATCACTCACTCACTCTCTCTCTCTCTCTAACATTACCTCATCTTCCTGATCTCTCCCTA TCACCCTTTGTCCAGAAACCCTAAATGTAACCCTGAAATTTGCATTGCTTCGGTGGATACGACATTTGTAGAGATCTTTG ATTACATTTTCTCTATCATCGCAATCGGCGCCTTCATCTTCAACGCTATCAGGTACGAGTTTTGTTTCCTTTTTTCCATT TCTGTTTTTTTTTTTCATTTTCATTATTCTCATGTTTGATTTCATTTAGATAATATATGTAAAGTAGAATTTACGTCGCT CACTATCTTTATCTCTCTAACTTTCCCTCATCTTCCTGATTTCTCCCTATCGCCTTTTGTCCAGAAACCCTAAAAGTAAC CGTGAACTTTGCATTGCTTTGGTGGTTACAACATTCGTAGAGATCTTTGATTACATCTTCTCTATCATCGCAATCGGCGC CTTCATCTTCAACTCTATCAGGTATGAGTTTTGTTTCCTTTTTTTCCATTTTTGTTTTTTTTCATTTTCATTATTCTCAT GTTTGATTTCAGTTAGATAATATGTATAGTAGAATTTACATCATTGCTAGTTGTCTATGCAATGCTACAATTAATGCTCT CTGAATAACTTCCAAGAATCTCAATAGGAGAATTGGAGGTGCATTTATACATAAGCTATTTTTTTTAAATGTTTTTTTTT AATCTTTGAAAACAGTTCTCATTTTCAGTTTTTAAAACTAAAAAACCAAAACAGGTAAAATATGTTTTCAGTTTCAGTTT TTAGTTTTCAGATATCAGTTTTCTAAATGTTCGAAAACATGTCATTCAAACTGTTTTCTTCTTCTGAAAACTGTTTTTAA GAATTGTTTCTGAAAACTGTTATAAAAACTGAAAACTAAAACTGCTATCAAACAGGCCCTAAATCTTTTTTCTCCTCCCA CTCTACCCTTCTTTCCTCCCACTCTACTACTTCCAATATGCTTCTCACTTCTTCATCTTCCGCGCCTCGAATCATCCACC ATCAGATCTATCAAGGTTTCTTCAAATCCAACAATAATTCATCACCATGAAATCGACACTTTCTGCCTTCACCATCATAT CTACGCAGCCTCCTTCAAATCCATCAACAACCCATTGCTTCTCCTTCGCTTCCTCCTCCTTCAACCTCCATTAGTCACAA CGTTCACCGCTCCAATCACCACGAGAACCACCACCTCTCAACCCTCACTTGAAGCCTTCAACCACCACCCAATCATCATA TGCCCAAACCCGCAGTTATACCCAAACCAAAAGCATCCTTCAACATATTCTTCATCTAAAAACATAGAAACAATCAGATA AAGGAGAAACATTTCTCTTTTAAGGAGGGGAAACATATACACAAATGGGAGAAAAGCAGATAATGTTAAAACCCTTGGTG TCCATACTCTCTACTCCTATTCTTGTGCCTGAAGCATATATGGCTTGAAGAGGGATTGGTTGCGGTTTGAAGATTGTCGT CGTAGCCTCCTAGGTTGAAAAAGTGGTGTGGAGGTTGTACTGTGGTGGTGATATTTGGGAGTGAGAGAAGAGAGCTTATG ATGGTATCACAATAACCCTTTTAGTGCAAATTCAATCCTAGATTTTAAGTAATGTGTAGACTCTTAATTCTAATTAAATA AGAAAACAAGTATATTTAAGCAGTAATCTAAATTAGCTAAAATAAGATCACGATATGATAAGACACTCGAAAATATTACA AAGTATCTTCATATTCTAACACTCCCCTCAAATTTAAGCTAACTAAGGTTTAAACTTCTTACAAATATAAATTTTAGAAA AAAGTAAAATCTAATAAGCCTGCATTGCCTTTGTCATTGCTACCATTGTAATTTCCATACTCATAGAGAAGAGGAGAAAC CAAAGAGAAAAGAATAGAACTCATAGTCATTGTGAACCACCAATCTGCGTCACCATGAAGAATAATACATTTCAAAGACA CCACACCTTTATTACCAACATAGAGACAATCAATCTTTTTTTAAGCTTCAGGGCACCATAACAAATATTCTAGAGTATAT GGTAGTGGTTTTTCATAGTTGAAGTCGTCGGAACCCATGGGATGAGACGCCACCTTTTCCTTGATAATCAAAAATATTCT AGAGTATATGTCATTATCAAGGAAAAACTACCTCTGCAATGAATCTTGCGTCGCCGTTGAGAGAAGGGCATAGCCTTACA CCGTCGTGGGAAGGAGGGTTCGACAAAAACATTGCGCTATTGAGAGAGAGAGAGAGAGAGAGTGAGAGAGAGAGAGAGGA GGAGGACCATGGACTTGTGTTGTCGGAGATGGAACTACTGCCATATAGCACCGCTGGACTAGCACCATGGTTATAGAAGA CCATTGTTAGGGAAACAAAAAGAGTTGAAGACACAGAGATAAATAGACATTTAGTTTTTAGGTGAGAAATGATCGAACCT ACACTCCAAAGTTGGATAAATAAAATTTATTTCAGGATCAAACATATTCTTGATATCATGTTGAGTGGAGCAATGCAAAG AAAAGAGAGAGAAGAGAAGTGGAATTGCACTAGGATTTACATTGTGCATAATAGATTGATTAAAAGATAAAAGTCTTACA CATATTTAAAGTTATGGGTAGACTCATAACCATAATTAAATAAGGAAACAAATCAATTTAAGAAAAATTTAATTACCTAA AATAAGATCAAGATATGAGAAGATAGTCTATGATATGATTAAGATATTTGAATGTATCTTTTTTCAGATTCTAACAAGTA CTCATCAATTAAAACATGTGTTTTATCATAATACAATGACAAGAAATATTATTGTTACTCATAAAGTGTTACCATTATTA TTTATAAACAGAGTTATCAATTGTTTTGTTTGCAGGATGGCTTCTTGTTCAAGAGTAGTCAAAGAAGCGAACGAGGAGAG CACTGAGAGGCCAAATTGGCTTGAACTTCCCAAACAAATGACTACAAATATATTTCATAAACTTGGTGTGTTTGAAGTTT TGACCAGTGCGCGCCAAGTGTGCTCTCTATGGTGGAACATCTCCAAGGACCCTCTTATGTGGCGCACCATTGACTTGACC AAACCCCCTCGCTATCCGCAGTCAACATTAGTGAATCTTTGCTGCTATGCCATTGAACAAAGTTGTGGCCATTTAGAAGA TATTAGTATTGAGTATTTTGCCACCGACAAAGTCCTGAAATGCATCGCTAACAGGTAAGGCTTGTCATCATTTTCATTTG GCTCGCATCCATTTGTTATGGTTAAGATTAATTATGATAGTTTTATCGATTCTCATTTTTAAATATTGAAATAGTAGATA CACAAATCATACACCTCATTTATCTCATTTTTAAATACTAAAATAGTAGAGACACAACTCATACACATCCCAACGATCAT TTATCTTTTTTAATCTTAATTTCTCACTTTTTTTATTTGGGATGTCTATACACTTCATGAAGCGTCTACTAAACATCGTC CTAGTTTTGTATACCAAAAATATTTTTTAATCTAGCACATGTATCATGTGCAAAGGACAATTTTGTTCGAGTCTAAACTT GCACATCCTGGTGTGGCTAGCTCTTTTAAATTTCTAGTGGAATCCTAAAGGGACTTTTCCCACTGGGGGATATAACTTCA CAAAGCAATACATTTTATTTTCTATGTCTGCTGCCATATTTTGCTTTATTTTTCACTGATTGGACAACATGTAAAAGCAT GTTAAAATTTTAGTGACAACTCAATCATTATTATAATTATTTATTTGGTATCATAGTTTAGTTTAATCATGTTAGCTTTT ATTTGTTTATTTTCTTTTTTTGAATTTTACAGCGGAAGTCACCTACGACGAATAAGGCTTATAAAATGTTGGAATGTTTC AAATAAGGGACTGCGAGAGGCTGTAATCAAGCTTCCATTGTTGGAAGAGTTTGAAATTTCATTCAATAACGTATTTAATG ATACTTTTGCAGTTATGGGCCAATTTTGCCCACTGTTGAAAGTGTTGAAATTTAATATGCAGCCATACAAACGCCTCAAG TGTGATGATGAGGCATTTGCTATTGCAAGAAACATGCCTAACCTACATCATCTCCAACTTATGGGAAACTGGCTCACAAA TGATGGCTTGATTTCCATTCTTGACAGTTGTCTTCATCTTGAATCTCTGAATCTCAAGGCTTGTAAGAATATTGACTTGA GCGGAAGTTTGGGGGAAAGGTGTTATAAGCAAATCAGAGAGTTACATTATAAGGAGTATGCACATTGTGCATTTGAAAGT GATGTTCAAGAGGCATATCATGGCATGGTCTATTTCAATATTTAGCTTTGTTGTTAAGTGTTTATTATATGTTCATATCA TAAGTGTGGATCACCTGGTACCGTTCCATATGAAATTTAATGTTTTTCTGGAAAGAGACTTGATATTTCTTTTGAATGGC A
Download Genomic Sequence

CDS sequence (LotjaGi5g1v0177400.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGCTTCTTGTTCAAGAGTAGTCAAAGAAGCGAACGAGGAGAGCACTGAGAGGCCAAATTGGCTTGAACTTCCCAAACA AATGACTACAAATATATTTCATAAACTTGGTGTGTTTGAAGTTTTGACCAGTGCGCGCCAAGTGTGCTCTCTATGGTGGA ACATCTCCAAGGACCCTCTTATGTGGCGCACCATTGACTTGACCAAACCCCCTCGCTATCCGCAGTCAACATTAGTGAAT CTTTGCTGCTATGCCATTGAACAAAGTTGTGGCCATTTAGAAGATATTAGTATTGAGTATTTTGCCACCGACAAAGTCCT GAAATGCATCGCTAACAGCGGAAGTCACCTACGACGAATAAGGCTTATAAAATGTTGGAATGTTTCAAATAAGGGACTGC GAGAGGCTGTAATCAAGCTTCCATTGTTGGAAGAGTTTGAAATTTCATTCAATAACGTATTTAATGATACTTTTGCAGTT ATGGGCCAATTTTGCCCACTGTTGAAAGTGTTGAAATTTAATATGCAGCCATACAAACGCCTCAAGTGTGATGATGAGGC ATTTGCTATTGCAAGAAACATGCCTAACCTACATCATCTCCAACTTATGGGAAACTGGCTCACAAATGATGGCTTGATTT CCATTCTTGACAGTTGTCTTCATCTTGAATCTCTGAATCTCAAGGCTTGTAAGAATATTGACTTGAGCGGAAGTTTGGGG GAAAGGTGTTATAAGCAAATCAGAGAGTTACATTATAAGGAGTATGCACATTGTGCATTTGAAAGTGATGTTCAAGAGGC ATATCATGGCATGGTCTATTTCAATATTTAG
Download CDS Sequence

Protein sequence (LotjaGi5g1v0177400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MASCSRVVKEANEESTERPNWLELPKQMTTNIFHKLGVFEVLTSARQVCSLWWNISKDPLMWRTIDLTKPPRYPQSTLVN LCCYAIEQSCGHLEDISIEYFATDKVLKCIANSGSHLRRIRLIKCWNVSNKGLREAVIKLPLLEEFEISFNNVFNDTFAV MGQFCPLLKVLKFNMQPYKRLKCDDEAFAIARNMPNLHHLQLMGNWLTNDGLISILDSCLHLESLNLKACKNIDLSGSLG ERCYKQIRELHYKEYAHCAFESDVQEAYHGMVYFNI
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR38926
8 249 242 9.7E-83 –
PANTHER
PTHR38926:SF2
8 249 242 9.7E-83 –
Gene3D
G3DSA:1.20.1280.50
13 64 52 6.3E-9 –
ProSiteProfiles
PS50181
18 65 48 9.1
IPR001810
Pfam
PF12937
21 67 47 1.4E-6
IPR001810
SUPERFAMILY
SSF52047
49 234 186 8.83E-18 –
Gene3D
G3DSA:3.80.10.10
65 264 200 4.6E-23
IPR032675

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005515
Molecular function Protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi5g1v0177400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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