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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0178100 |
| Transcript ID | LotjaGi5g1v0178100.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | LINE-1 reverse transcriptase like; TAIR: AT3G09510.1 Ribonuclease H-like superfamily protein; Swiss-Prot: sp|Q8BMT9|HHAT_MOUSE Protein-cysteine N-palmitoyltransferase HHAT; TrEMBL-Plants: tr|A0A151RPJ0|A0A151RPJ0_CAJCA Retrovirus-related Pol polyprotein LINE-1; Found in the gene: LotjaGi5g1v0178100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:45501700..45503166) extracted from Lotus japonicus Gifu genome v1.2.
GGGGGGAACAGAGGACAACAATAAGATAGCTTGGTTAAGTTGGGACACAATATGCAAAACAAAAGAGGAAGGTGGCTTGG GGATAAAAGATTTGGGTAGATTCAATAAAGCACTAGTGGGAAAATGGCGTTGGCGTTTTTTGAATGAGAAGGAGAGCCTT TGGAATAAAGTGTTGCGGGCAAAGTATATCTGCTCAAGGTCCTCAAAAGCGTCTTATTGGTGGCAAGATTTGAAGAATCT GTGTTTTCAAGAGGGGAATGACCTTTGGTTCGAAAATCTGATTTGTAGGAGAGTGGGAGATGGGGAAGATACTCTTTTCT GGTCAGATATTTGGCTTGATAATATGAAGCTCTCTGAAAGATTCCCAAGACTCTATTCTTTATCAACACAGAAGAGCAAA AGCATAAAGGAGGTGGGGTCTTGGCAAAATGGGAACTGGGTATGGTATTTTTCGTGGAGGAGAAACTTAAGGGTATTTGA AGAAGATCTCCTCAATCAGATGATGAGCTCTCTGAACCTGTTTGTGCCATCTTTGAACCGTGTTGATAGCTGGTGGTGGC TTGCAAATCCAGAAGGACAGTATACGGTTCATTCAGCTTATGCGAGCTTGATAGAACACGATGGTGGTGTGGGTGAAGAG GTATTCAAGAGCTTGTGGGGTGTTCCTGCCATATCTAATGCTTTAGCCTTCACATGGAAGGTGTTCTATGACAGGATACA AACTCGGGACAACCTAAGAATGAGAAATGCTATTCCCTCTCAAGCAGATTTGAGATGCCCCCTTTGTCTATCTCATGAAG AATCCTCTCCACATCTTCTTTTTTCTTGTCATGTTGCCTGGAGGATCTGGATGGGAATCTATAATTGGATTGGCTTATTT ACTGTTCTGCCTTCTAATGGAAAGGAACACTTTTTGCAACATTCATTCCCGTGGTGGACGAAAGCACAAAAACAAGGGTC TTGGGTGGTTTGGATAGCGGTAATCTGGACAATATGGAATCTTAGAAATAATCTCATCTTCAGAAATGGCCAAGTAGACA TTGATAAAGTGTTGGAGGGGATACAATTTAAATCTTGGAGCTGGCTCAAAGGAAGACTAAAAGGATTTCATTATACTCTT TATGAATGGCAAGCTCAACCGCTTCTTCTACTGAACTCTTTGTGATCATCTTGCTGTCTTTGCCAGCGCCCACCCTCATT TCTTTCCCAAGTCATGTTGGACAGCTCTCCTCTGACTTTTCCCTTGACCTGTCGGTGGCTGTTTTAATTTGAGTAGTAGC TTTCTCTTTATTTCATTGTATTGCTGTAGCCTGTTATATCATTAGAAGGATTCAATGTAGGGACTGATTGTTTTTCTGCA TATTGCTAGTTGTTGGACAAAGTCTTGTTATTGGTTAGCTTTTTGCTAATCTCTCTCATTGTATTTGGTTGGAGTACCCA TTGTACTCTCAATTTATATTATTTTTG
CDS sequence (LotjaGi5g1v0178100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAGCTCTCTGAAAGATTCCCAAGACTCTATTCTTTATCAACACAGAAGAGCAAAAGCATAAAGGAGGTGGGGTCTTG GCAAAATGGGAACTGGGTATGGTATTTTTCGTGGAGGAGAAACTTAAGGGTATTTGAAGAAGATCTCCTCAATCAGATGA TGAGCTCTCTGAACCTGTTTGTGCCATCTTTGAACCGTGTTGATAGCTGGTGGTGGCTTGCAAATCCAGAAGGACAGTAT ACGGTTCATTCAGCTTATGCGAGCTTGATAGAACACGATGGTGGTGTGGGTGAAGAGGTATTCAAGAGCTTGTGGGGTGT TCCTGCCATATCTAATGCTTTAGCCTTCACATGGAAGGTGTTCTATGACAGGATACAAACTCGGGACAACCTAAGAATGA GAAATGCTATTCCCTCTCAAGCAGATTTGAGATGCCCCCTTTGTCTATCTCATGAAGAATCCTCTCCACATCTTCTTTTT TCTTGTCATGTTGCCTGGAGGATCTGGATGGGAATCTATAATTGGATTGGCTTATTTACTGTTCTGCCTTCTAATGGAAA GGAACACTTTTTGCAACATTCATTCCCGTGGTGGACGAAAGCACAAAAACAAGGGTCTTGGGTGGTTTGGATAGCGGTAA TCTGGACAATATGGAATCTTAGAAATAATCTCATCTTCAGAAATGGCCAAGTAGACATTGATAAAGTGTTGGAGGGGATA CAATTTAAATCTTGGAGCTGGCTCAAAGGAAGACTAAAAGGATTTCATTATACTCTTTATGAATGGCAAGCTCAACCGCT TCTTCTACTGAACTCTTTGTGA
Protein sequence (LotjaGi5g1v0178100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKLSERFPRLYSLSTQKSKSIKEVGSWQNGNWVWYFSWRRNLRVFEEDLLNQMMSSLNLFVPSLNRVDSWWWLANPEGQY TVHSAYASLIEHDGGVGEEVFKSLWGVPAISNALAFTWKVFYDRIQTRDNLRMRNAIPSQADLRCPLCLSHEESSPHLLF SCHVAWRIWMGIYNWIGLFTVLPSNGKEHFLQHSFPWWTKAQKQGSWVVWIAVIWTIWNLRNNLIFRNGQVDIDKVLEGI QFKSWSWLKGRLKGFHYTLYEWQAQPLLLLNSL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 163 | 163 | - | – | |
| PANTHER | 6 | 243 | 238 | 8.9E-29 | – | |
| PANTHER | 6 | 243 | 238 | 8.9E-29 | – | |
| Pfam | 80 | 169 | 90 | 8.6E-16 | ||
| Phobius | 164 | 184 | 21 | - | – | |
| Phobius | 185 | 203 | 19 | - | – | |
| Phobius | 204 | 220 | 17 | - | – | |
| Phobius | 221 | 273 | 53 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi5g1v0178100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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