Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

LotjaGi5g1v0180000.1

Overview

Field Value
Gene ID LotjaGi5g1v0180000
Transcript ID LotjaGi5g1v0180000.1
Lotus japonicus genome version Gifu v1.2
Description Ethylene-responsive transcription factor; TAIR: AT3G23240.1 ethylene response factor 1; Swiss-Prot: sp|Q8LDC8|ERF92_ARATH Ethylene-responsive transcription factor 1B; TrEMBL-Plants: tr|I1LYJ4|I1LYJ4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0180000
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr5:45768161..45769524) extracted from Lotus japonicus Gifu genome v1.2.

AAAATAACACCAACTGGGTATTTGAATATGACATTGTGGGGTGTGAAGCGAATAGGAAAATGGGAAAGATGAAGAAAACG ACAAGGATTAGTTGCCTAATATGGTGTTCCCTTCCTTTGAGAAAAAATCCTAGATTTAGAAATGCTGCCTAAGGAGCTTT CAGATATTCTGTTCCAAATTGAAACATTTTCTAGCAATGGTGGTGGTGTTGCTGATGACCCTATTCATGATTTTCTTTCC TTCAACATGGTTGACTTCGCCGCCTCTGGGGCTGCGAAGAAAACCAGGGAAGGAAACAACAGCGAGCGGCGGAAGCAACC AGTGAAGAAATCTGAAGGTAAAGAAGTTCAAAGGTCGTGTATAGGTGTGAGGAAAAGGCCTTGGGGGAAATTTGCTGCTG AAATCCGAGATACAACACGAAACGGGGCGAGGGTCTGGCTCGGGACATTTGATAATGAAGAGGATGCTGCTTTGGCTTAT GACCAAGCTGCATTTTCCATGAGAGGTAGCAATGCTGTTCTTAATTTTCCTGTGAAAAGGGTTAAAGAATCTTTGCAAGA AATGGAAAATGATTGGGGCAAAGGGTGTTCCCCTGCACTTGCACTCAAGGAGAGGCACTATGTGCAAAGAAAATTGTCAC CAAAGGGTAAGAAGAGTAAAGGGGAAAAGTTATCAGAGGGAACTAGTGTGTTGGAGCTAGAGGATTTGGGTGATGAATAT CTTGAGCAACTTCTAAGTATGTCAGATCAAAGTGAAAGCCATAGCTACTCGATGTAAATCTGTCTACTTTTTTTTTACCC CTTTTTTCCAGTTTTTCTTGGTTGATTTGGGCTTTTGTTGTCTCTGTTTAATAAAATCCTGCACTGTTTTCTTCTTTACT TTGACCTGCTAACAAAATTTCTAATAATGTTTGATGCAACAAGAGAGATAATAATTTCAATGAATTCAATTGGAAGAATG TAAAACATAGGTTGTGTTTATTTTAGCATTAGCTTGAAACAATGTTCCTTCAATGTCAACCCTTCATTGACTATGATGGG TGACTTAGTGGATAATTACTAATTCTTAGGCTCATTAAACTCATTAGAAGATAATTGTTTATTGAGTTTAGGGAGAGATT ACTTTTCCATAAGAAGATGATATATTCTTTTATGTATTTTAAGAGGAACGATATTGTCCTTAAACATATTTTTATAATGG CTTAATTGCAATTTTCGTCCCTGATGTTAGGCCTATGTGCAATTTGAATCCCCTTTGTTTAAAAGGAGCAATTTTGGTCC CCTAAAAATTAATTTGTGCAATTTTAGTCCTGCCGTTAGTCTTCTGTTAAATTGTTAACGGCATTATCCTATGTGGCTTT CATT
Download Genomic Sequence

CDS sequence (LotjaGi5g1v0180000.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGCTGCCTAAGGAGCTTTCAGATATTCTGTTCCAAATTGAAACATTTTCTAGCAATGGTGGTGGTGTTGCTGATGACCC TATTCATGATTTTCTTTCCTTCAACATGGTTGACTTCGCCGCCTCTGGGGCTGCGAAGAAAACCAGGGAAGGAAACAACA GCGAGCGGCGGAAGCAACCAGTGAAGAAATCTGAAGGTAAAGAAGTTCAAAGGTCGTGTATAGGTGTGAGGAAAAGGCCT TGGGGGAAATTTGCTGCTGAAATCCGAGATACAACACGAAACGGGGCGAGGGTCTGGCTCGGGACATTTGATAATGAAGA GGATGCTGCTTTGGCTTATGACCAAGCTGCATTTTCCATGAGAGGTAGCAATGCTGTTCTTAATTTTCCTGTGAAAAGGG TTAAAGAATCTTTGCAAGAAATGGAAAATGATTGGGGCAAAGGGTGTTCCCCTGCACTTGCACTCAAGGAGAGGCACTAT GTGCAAAGAAAATTGTCACCAAAGGGTAAGAAGAGTAAAGGGGAAAAGTTATCAGAGGGAACTAGTGTGTTGGAGCTAGA GGATTTGGGTGATGAATATCTTGAGCAACTTCTAAGTATGTCAGATCAAAGTGAAAGCCATAGCTACTCGATGTAA
Download CDS Sequence

Protein sequence (LotjaGi5g1v0180000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MLPKELSDILFQIETFSSNGGGVADDPIHDFLSFNMVDFAASGAAKKTREGNNSERRKQPVKKSEGKEVQRSCIGVRKRP WGKFAAEIRDTTRNGARVWLGTFDNEEDAALAYDQAAFSMRGSNAVLNFPVKRVKESLQEMENDWGKGCSPALALKERHY VQRKLSPKGKKSKGEKLSEGTSVLELEDLGDEYLEQLLSMSDQSESHSYSM
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR31190
29 203 175 1.5E-69 –
PANTHER
PTHR31190:SF139
29 203 175 1.5E-69 –
MobiDBLite
mobidb-lite
44 71 28 - –
MobiDBLite
mobidb-lite
49 71 23 - –
ProSiteProfiles
PS51032
72 130 59 20.969
IPR001471
SUPERFAMILY
SSF54171
73 131 59 3.01E-21
IPR016177
PRINTS
PR00367
73 84 12 2.3E-10
IPR001471
Gene3D
G3DSA:3.30.730.10
73 132 60 1.4E-28
IPR036955
Pfam
PF00847
74 122 49 1.5E-11
IPR001471
CDD
cd00018
75 131 57 6.688E-28
IPR001471
SMART
SM00380
75 136 62 1.9E-32
IPR001471
PRINTS
PR00367
112 132 21 2.3E-10
IPR001471
MobiDBLite
mobidb-lite
164 183 20 - –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003677
Molecular function DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
Subterm of
GO:0003700
Molecular function DNA-binding transcription factor activity A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units, and include bacterial operons.
Subterm of
GO:0006355
Biological process Regulation of transcription, DNA-templated Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
Subterm of
Regulates

Genome browser

Expression data

Expression pattern

Expression pattern of LotjaGi5g1v0180000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…