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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0180100 |
| Transcript ID | LotjaGi5g1v0180100.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Ethylene-responsive transcription factor; TAIR: AT3G23240.1 ethylene response factor 1; Swiss-Prot: sp|Q8LDC8|ERF92_ARATH Ethylene-responsive transcription factor 1B; TrEMBL-Plants: tr|A0A072VKJ4|A0A072VKJ4_MEDTR Ethylene-responsive transcription factor 1B; Found in the gene: LotjaGi5g1v0180100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:45831193..45831985) extracted from Lotus japonicus Gifu genome v1.2.
CTGTAGAACGAACAGCCATCACAAACAATGATGTTCGAATCATCTTTTAGAAATAATCATATTGAATTTGATGATCCTGT TCATGATTTTCTTTCCTTCGATATGGTTGATTTCTCCACATTTTCACAGGCACCAACAGAAGAAAACAACAACGAGCGAA AACAATTGGCGCAGAAGAATATTGAAGCTAATCAGAGAAATAAGGAAAGGCCATATATAGGTGTGAGGAAAAGGCCATGG GGGAAATATGCTGCTGAAATCAGAGATACAACGCGGAATGGGACGAGGGTCTGGCTCGGAACATTTGAAAGTGCTAAGGA TGCTGCTTTGGCTTATGATCAAGCTGCATTTTCCATGAGAGGTAGCAATGCTGTTCTCAATTTTTCGGTGGAAAAGGTGA AAGAATCTTTGCAAGAGATGGAATATGATTGTGACAAAGGGTGTTCACCTGCACTTGCACTCAAGGAGCTGAACTGCACC AAAAGAAAACTGTCATCTAAAGCTCAATTGAGTCAAGGGGTAAAGGAATCTGCAGAGCCTCAAAATGTGTTGGTGTTACA GGACTTGGGAGTTGAATATCTTGAGCAACTTCTAGACATATCTGATCAAACTGCAAGTCCTAGCTACTCAAAGTAAACCT ATTTATGAATTATGATTACTTTTCTCCCCTTCTCCCCCCCTTTTCCCTGCAATCAGATCTTGGCAGGACGATGATGGATG ATAATGGGCAGACAAAATTGGGGATAATAGCTGTTAGCTATTGGCTTAGCACGTGGTTTGTGGTTTAATTTGC
CDS sequence (LotjaGi5g1v0180100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATGTTCGAATCATCTTTTAGAAATAATCATATTGAATTTGATGATCCTGTTCATGATTTTCTTTCCTTCGATATGGT TGATTTCTCCACATTTTCACAGGCACCAACAGAAGAAAACAACAACGAGCGAAAACAATTGGCGCAGAAGAATATTGAAG CTAATCAGAGAAATAAGGAAAGGCCATATATAGGTGTGAGGAAAAGGCCATGGGGGAAATATGCTGCTGAAATCAGAGAT ACAACGCGGAATGGGACGAGGGTCTGGCTCGGAACATTTGAAAGTGCTAAGGATGCTGCTTTGGCTTATGATCAAGCTGC ATTTTCCATGAGAGGTAGCAATGCTGTTCTCAATTTTTCGGTGGAAAAGGTGAAAGAATCTTTGCAAGAGATGGAATATG ATTGTGACAAAGGGTGTTCACCTGCACTTGCACTCAAGGAGCTGAACTGCACCAAAAGAAAACTGTCATCTAAAGCTCAA TTGAGTCAAGGGGTAAAGGAATCTGCAGAGCCTCAAAATGTGTTGGTGTTACAGGACTTGGGAGTTGAATATCTTGAGCA ACTTCTAGACATATCTGATCAAACTGCAAGTCCTAGCTACTCAAAGTAA
Protein sequence (LotjaGi5g1v0180100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MMFESSFRNNHIEFDDPVHDFLSFDMVDFSTFSQAPTEENNNERKQLAQKNIEANQRNKERPYIGVRKRPWGKYAAEIRD TTRNGTRVWLGTFESAKDAALAYDQAAFSMRGSNAVLNFSVEKVKESLQEMEYDCDKGCSPALALKELNCTKRKLSSKAQ LSQGVKESAEPQNVLVLQDLGVEYLEQLLDISDQTASPSYSK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 19 | 194 | 176 | 8.1E-69 | – | |
| PANTHER | 19 | 194 | 176 | 8.1E-69 | – | |
| Coils | 37 | 57 | 21 | - | – | |
| Gene3D | 61 | 122 | 62 | 2.4E-28 | ||
| ProSiteProfiles | 62 | 120 | 59 | 21.022 | ||
| SMART | 62 | 126 | 65 | 8.1E-34 | ||
| PRINTS | 63 | 74 | 12 | 8.8E-9 | ||
| CDD | 63 | 119 | 57 | 4.41906E-28 | ||
| Pfam | 63 | 112 | 50 | 7.8E-12 | ||
| SUPERFAMILY | 63 | 121 | 59 | 3.6E-21 | ||
| PRINTS | 86 | 102 | 17 | 8.8E-9 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Molecular function | DNA-binding transcription factor activity | A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units, and include bacterial operons. | ||
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. |
Expression pattern of LotjaGi5g1v0180100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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