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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0180200 |
| Transcript ID | LotjaGi5g1v0180200.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Ethylene-responsive transcription factor; TAIR: AT3G23240.1 ethylene response factor 1; Swiss-Prot: sp|Q8LDC8|ERF92_ARATH Ethylene-responsive transcription factor 1B; TrEMBL-Plants: tr|A0A072VKJ4|A0A072VKJ4_MEDTR Ethylene-responsive transcription factor 1B; Found in the gene: LotjaGi5g1v0180200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:45906720..45909145) extracted from Lotus japonicus Gifu genome v1.2.
CTTCACCAGATCTAGATCATTCTCCCCCTTCTTCACTAGACCACAACACTAGATCCAAATCCAGAACCTCCTCCCCTCTG CCACCTCGTCCTCCTCCACTCCAGATCCCTCTGCATCTCCACCGCGCCAGCTACGAGGTCGCCGCCCTCAAACTTGTTTT CTTTCTCACTGTCCTTAAACTTGTCATCTTCCTCTTTGTCATTCTCAAATCTACCTATAGACAGTAAAAAGCCCAGATCC ACAACGAACCCAGATCTCACGGCGCAACGGTTGTGGAGAAGAAACGTGGTGCCATTTTGTGCAACATCGCGGTGATGGGG TCCCAACGCGGTGCTAGATCGAAAGCGCGGTGGGAGTGGGTCGCGAGGGAATCGAGCCCATATCTGAATGGAGGGGTTGG AGCACGGAAACATGATGAAGATATGATGAAATCTCAAGAAGCTTTTTTTTTACCTGATTTGCGGTACGAAGGACAAAAGG CTCAGAGCTAAGTGACCTGTTAGGATGCCTACTAAGGTTCTTAACATCACTACTAGGAAATCCCTGCTACTGGTATGGGG AACCTGGCTTGATGTGGAATTGTGGATATGTATGCTTGGACGGGGATTAATGAGTGTGGGTCGCGAGACATATTGCTCGG TGGTTAATTTGTAGCTTTAACTTTTGCTACAACAAGTATTGGCTGGATGTTTATATGTGTCGATTGTTTCTATTTGTTTC CTCCCATGTTTCTTTGTGATTCTGAGACCATTTCGGTTCCAAATTTTCATGTTGTGATTCATTGTTTATTTCTTATGTAT TTGAAGTTTTGATTGTGGAACTGAGTTGATTTGTTCTCTGAGTAGTTTTACAATATTTGAAATCATGCTTGAAGACGTTG TAGGAAAAAAAGATGATGATCGAAATCTGGAAATCTGAAAAATTTGATGAAATCTGGAAATCTGGGTTTTGATGAAATCT GACAAAGTTAAAGCATTTGGGAATGAATTTTAGTAATTATTATTTTTGTTTTATATTTTAATTAATAAGATAAAGAATTT TAACCTTTTATCCTTTTTAGAATCTTTCAATCCTAGCCATTCATCTATAGAATATTCTTAGATTCTAAGATCTAACGGTT CTTAATAGTGGTCCACCCATGGACCAAAATGTTAATTGCCCACCCTAGTGGGCACCATAAAAAAAAAATTGTAACAAACA TGGTGTGTCAAATAAATAAGGGTATAGAAGGAAAAAATTGGGGAAAAATGCATTGGTATCCTAAAACAACAATCTATTTA GAATATTAAAAACATTCCCAAAACTACAAACTTTTTGAAACGGAGGGAGTATGATATATATATATATGGATTGAGAAGTG AATGGTTCAGGAGTTGATCCATGAAAAAAAGAATTGTAATATCATCAATTATTATTACAATACAATAACACAAGTTGATA TTTTAATAATTACAAGCTGTCGCGTGGTGGGGTTAGAGTCTAATAAATCAGAGCCCAAGTGGGGAAGATGAAACAACAGA AACGCAGTTGTCTGATATGACTTCCTCTTTCTTTCACAACCCAGATTTGGAAATGCTGAAGATGGAGGCGGAGCATTCAG ATATTATATTCGATCATGATTTTCTGTCCTTCCACATCTCTGATTTCTCCACAGATTCACAGCAGGCACCAACAGAAGAA AACAACAATGAGCCAAATCAATCTGCAGTGAAGAAGTCCAAAGCTAAAGAAATGCAGACGAATAAGGAAAAGTCATACAT AGGTGTCAGGAAGAGGCCATGGGGAAAATTTGCAGCTGAAATCAGAGATACAACACGGAACGGCGTGAGGGTTTGGCTCG GAACATTTGATAGTGCTGAGGATGCTGCTTTAGCTTATGACCAAGCTGCATTTACCATGAGAGGCGGTAACGCTGTTCTC AATTTTCCGGTCGAAAAGGTGAAAGAATCTTTGCAAGAGATGGAATATGATTGCGGCAAAGGGTGTTCACCTGCACTTGC ACTCAAGGAGAGGCACTGCATCCAAAGAAAATCATCATCAAAAGGTAAGAAGAACAAAGAGAAACAAGTACCATTGGTGC TAGAGGATTTGGGTGTTGAATATCTAGAACAACTTCTAAGCATATCTGATCAAAGTGAAAGCAGTACCAGCTACTTCAAT TAAACCGGTTTGCGCATTTTATTTCTATTTATTTTCAATTTTATCCCTTGTTGGTTTTGGAATGTTTACGACATCAATTA TCTGGAGAACTTTAGGTTCTGTTGCTGGTTTTAGGTCCAGCGCTAGCCCTATTTTGTTCTTTGATCTAGTGTGAAAGAAA ATGTTCAGCAATGAATTCAATGATCTTACACTAGTAATTGAGATTCATTATTGTACTTTAATGTAGATCAAATCGTTGAT ATATATGTGTGCTCACTCCTCTTTTG
CDS sequence (LotjaGi5g1v0180200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCTGAAGATGGAGGCGGAGCATTCAGATATTATATTCGATCATGATTTTCTGTCCTTCCACATCTCTGATTTCTCCAC AGATTCACAGCAGGCACCAACAGAAGAAAACAACAATGAGCCAAATCAATCTGCAGTGAAGAAGTCCAAAGCTAAAGAAA TGCAGACGAATAAGGAAAAGTCATACATAGGTGTCAGGAAGAGGCCATGGGGAAAATTTGCAGCTGAAATCAGAGATACA ACACGGAACGGCGTGAGGGTTTGGCTCGGAACATTTGATAGTGCTGAGGATGCTGCTTTAGCTTATGACCAAGCTGCATT TACCATGAGAGGCGGTAACGCTGTTCTCAATTTTCCGGTCGAAAAGGTGAAAGAATCTTTGCAAGAGATGGAATATGATT GCGGCAAAGGGTGTTCACCTGCACTTGCACTCAAGGAGAGGCACTGCATCCAAAGAAAATCATCATCAAAAGGTAAGAAG AACAAAGAGAAACAAGTACCATTGGTGCTAGAGGATTTGGGTGTTGAATATCTAGAACAACTTCTAAGCATATCTGATCA AAGTGAAAGCAGTACCAGCTACTTCAATTAA
Protein sequence (LotjaGi5g1v0180200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLKMEAEHSDIIFDHDFLSFHISDFSTDSQQAPTEENNNEPNQSAVKKSKAKEMQTNKEKSYIGVRKRPWGKFAAEIRDT TRNGVRVWLGTFDSAEDAALAYDQAAFTMRGGNAVLNFPVEKVKESLQEMEYDCGKGCSPALALKERHCIQRKSSSKGKK NKEKQVPLVLEDLGVEYLEQLLSISDQSESSTSYFN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 28 | 50 | 23 | - | – | |
| MobiDBLite | 28 | 60 | 33 | - | – | |
| PANTHER | 29 | 187 | 159 | 4.2E-74 | – | |
| PANTHER | 29 | 187 | 159 | 4.2E-74 | – | |
| CDD | 60 | 120 | 61 | 3.97149E-30 | ||
| Gene3D | 60 | 121 | 62 | 1.9E-29 | ||
| ProSiteProfiles | 61 | 119 | 59 | 21.997 | ||
| SMART | 61 | 125 | 65 | 4.6E-36 | ||
| Pfam | 61 | 111 | 51 | 3.2E-12 | ||
| SUPERFAMILY | 61 | 121 | 61 | 5.69E-22 | ||
| PRINTS | 62 | 73 | 12 | 3.7E-9 | ||
| PRINTS | 85 | 101 | 17 | 3.7E-9 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Molecular function | DNA-binding transcription factor activity | A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units, and include bacterial operons. | ||
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. |
Expression pattern of LotjaGi5g1v0180200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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