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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0180400 |
| Transcript ID | LotjaGi5g1v0180400.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Ethylene-responsive transcription factor; TAIR: AT3G23230.1 Integrase-type DNA-binding superfamily protein; Swiss-Prot: sp|Q9LTC5|ERF98_ARATH Ethylene-responsive transcription factor ERF098; TrEMBL-Plants: tr|C6T1T9|C6T1T9_SOYBN Putative uncharacterized protein; Found in the gene: LotjaGi5g1v0180400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:45950429..45951316) extracted from Lotus japonicus Gifu genome v1.2.
CTCAACTTTCTAGCAAGCTCAATTAAGCTTCTTCAGAATAAAGCAAAACAAAGACACTTGTTGTATTGTAACACAATAAA ATATATTGTTCTTCTCTTCTTCTAATTCTTGTTTGCATAGTGTTTCGAGTTATATTAATATTTGATTCTATAGCACAACA ATGGAGGCAGAGAGACCATCAGGTTCCAATGGAAACAACAATGGGGAGGTTCGTTACAGAGGGATTCGAAGGAGGCCGTG GGGGAAGTTCGCGGCGGAGATTCGCGACCCGACGAGGAAAGGGGCTAGGATATGGCTGGGGACATTTGACACTGCGGAGC AAGCTGCACGGGCTTATGATGCTGCTGCATTTCATTTTCGTGGTCACAGAGCAATTCTCAACTTCCCCAATGAGTACCAG GCTCCTCCTGATGCAGTGAACTCTTATTCTTTGCAAATGCCTCTCAGTGCTCCTTCTCATGCTTCCAATTCATCTTCTTC TTACTCTGGTGGTGATGGTAACAATGGCATTGTGAAAGCTGAACCTTCTGGAGAGATGCAATTTGGTGATGATCACAGTT TTGAGTTGGAGTACTTTGATAGTAAGTTGCTGGAAGATCTCCTTCAAGATGACAGATATGGGCACTAGAAGCAAATAACA AGCTAGCTAGGGAGTTATGAAACATTAACACCAAAGTTTCCTTTACGTCACAATTCTACATCGATTGGCATGAATTCTGC TGTTTATTCCTAGCTAAGAGACACGTATTCTAAATTCTTGAAACTGAGATGACATTGTAATATTCATTGTGAGAATTTAA TTAGTTGAGAAAATAAGTGACATGGAATGTCAGTGTAATTAAGAACGTTTGCTATGCTCAATGGCTGTTTTTTTTTTTCC TCTTTTCA
CDS sequence (LotjaGi5g1v0180400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGGCAGAGAGACCATCAGGTTCCAATGGAAACAACAATGGGGAGGTTCGTTACAGAGGGATTCGAAGGAGGCCGTG GGGGAAGTTCGCGGCGGAGATTCGCGACCCGACGAGGAAAGGGGCTAGGATATGGCTGGGGACATTTGACACTGCGGAGC AAGCTGCACGGGCTTATGATGCTGCTGCATTTCATTTTCGTGGTCACAGAGCAATTCTCAACTTCCCCAATGAGTACCAG GCTCCTCCTGATGCAGTGAACTCTTATTCTTTGCAAATGCCTCTCAGTGCTCCTTCTCATGCTTCCAATTCATCTTCTTC TTACTCTGGTGGTGATGGTAACAATGGCATTGTGAAAGCTGAACCTTCTGGAGAGATGCAATTTGGTGATGATCACAGTT TTGAGTTGGAGTACTTTGATAGTAAGTTGCTGGAAGATCTCCTTCAAGATGACAGATATGGGCACTAG
Protein sequence (LotjaGi5g1v0180400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEAERPSGSNGNNNGEVRYRGIRRRPWGKFAAEIRDPTRKGARIWLGTFDTAEQAARAYDAAAFHFRGHRAILNFPNEYQ APPDAVNSYSLQMPLSAPSHASNSSSSYSGGDGNNGIVKAEPSGEMQFGDDHSFELEYFDSKLLEDLLQDDRYGH
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 2 | 152 | 151 | 7.9E-64 | – | |
| PANTHER | 2 | 152 | 151 | 7.9E-64 | – | |
| Gene3D | 17 | 78 | 62 | 7.7E-32 | ||
| SUPERFAMILY | 18 | 77 | 60 | 1.9E-23 | ||
| ProSiteProfiles | 18 | 76 | 59 | 25.567 | ||
| Pfam | 18 | 69 | 52 | 2.8E-13 | ||
| SMART | 18 | 82 | 65 | 8.7E-35 | ||
| CDD | 18 | 77 | 60 | 8.08034E-21 | ||
| PRINTS | 19 | 30 | 12 | 1.4E-11 | ||
| PRINTS | 42 | 58 | 17 | 1.4E-11 | ||
| MobiDBLite | 95 | 113 | 19 | - | – | |
| MobiDBLite | 95 | 124 | 30 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Molecular function | DNA-binding transcription factor activity | A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units, and include bacterial operons. | ||
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. |
Expression pattern of LotjaGi5g1v0180400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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