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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0180600 |
| Transcript ID | LotjaGi5g1v0180600.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Ethylene-responsive transcription factor; TAIR: AT2G31230.1 ethylene-responsive element binding factor 15; Swiss-Prot: sp|Q8VYM0|ERF93_ARATH Ethylene-responsive transcription factor 15; TrEMBL-Plants: tr|A0A140WWG0|A0A140WWG0_LOTCO AP2/ERF; Found in the gene: LotjaGi5g1v0180600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:45989666..45991441) extracted from Lotus japonicus Gifu genome v1.2.
ATCCATCCTCCTTCACCAATAATCTCAACTCCACTATATTATAAACAATTATTGATTCTATCTATTATCTATCAATTCTT GGTCGTCATGTTTTTCCCTTTCTATGTGGGTATATAAAGCTGGAAAGCACCCCAAATCTATTCTAACTCCCACAGAAAAA GTGCTTATACCAAAAACAGCTGAATTTGGTATCTCCACTACTTTGATTAATTCTAAGACATGGATTTTGATTCTTCTTTC TTTCAACACCAAAACCTTAACTCCTCCTTTTCAAATCCTTCTTTTTCTTCTGAATCTTTCTCTTGGGAAGATTTCTTTTT CTTCAATGAAGACAACAACACACTTCTTCCCTTCATTGAATCATCTTCGGATTCCAACACTTCAGGATCTCAGCTTAGCC TCACTGAATCATCATCATCAACAACACAAGAAGTCTCGTCCAATTCAACTCAAACCGAACAAGTCAAATTAGAACCACAC ACATCATCATCACCGCCGCCGCCGCCATCACCGCCGCCTAAGGAGGAAATTACGAAGAGGCCATTCAGGGGAGTGAGGAG AAGGCCATGGGGGAAATTCGCAGCCGAAATAAGAGACTCCACGAGAAACGGTGTTCGAGTGTGGATTGGCACGTTCGACA CGGCTGAAGCAGCGGCTCTAGCTTATGACCAAGCGGCTTTGTCCACGAGAGGTTCCATGGCAGTGCTGAATTTCCCCGAG GAAGTGGTGAGGGAGTCACTGCAAGACATGGCTAACAAGCCTTGCGAAGATGGTTCCTCTCCTGTGTTGGCACTCAAGAG AAACCACACCATGAGAAGAAAGTCCAAGTCCAATAAGGCAACAAGTCACAAAAGGGCTAAAAGGGAAGAAACAATGCAGT TGGAGATTAATCTCTCCACAAATGTTATAGTTTTGGAGGATTTGGGTTCTGAATATCTTGACCAACTCTTGAGCTTGACT TCTTCTCAAGAAATCCCATTTGGTAGCTAGCTCCTCCGTAGTGTTGAATTTGGTTATTCTTTCATGGTAAATTCTTTCTA TTCCGTTTCCGGATTAAGATCTCCCAATGAAATGAAAGTGCATCACGTCAATTAAAAGTGCATGAATATAAAATTATAAT TATACAAGATTCATTTTTAATTGAGTTAGCAGGATTTCATTGGTGATACAAGAAATGAGACACCATTTAAACTCAAATGA TTTTAATCCACTCATTTCTTTCTATTAATATCTTTTTCATCATCTTCCTTAAGGAATTTCTTCCAGCTTCCTCCAAATGT AATTAGAGAGAAGATTAGAGGGTCCAATATAAAAATTGGCCCTGAAGGAAAAATTACCCAAACAATTATTGTTGTTGAAT GTCTATAGATGCTATTGCGTTCACAGAAATCTTGGACGAGGATTTAGATTTTGGTTGTAGAATTTTTAACCTGCATCATC TTTGACCATTTAAAATTTATTTCTAATAAAATATTATGTTTGATATAAAAATGAATTAGTGAGACTCAATAGTACGTGGA AGATGTGCTTATAAAAAAAAAATAGTGGAAGATGTAAACGCAGCGCTCCTGCATTTATCTTTGGCTTAAATAAGTTTTTG GTCCCTAACCTTTACTAAATGCTTGGTTTTCATCCCTCGCCGGAGCAAAGGTGGGTTTTAGTCCCTAACCTTTGCCAAAA GATTTGGTTTTGGTCCCTCCAGAGCTCTGAATTAACGCCGGAGCTCCGGTGGCCCATGTGGCATGGCCACATGGGATTAA TGAGGCCAGTATTAAA
CDS sequence (LotjaGi5g1v0180600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGATTTTGATTCTTCTTTCTTTCAACACCAAAACCTTAACTCCTCCTTTTCAAATCCTTCTTTTTCTTCTGAATCTTT CTCTTGGGAAGATTTCTTTTTCTTCAATGAAGACAACAACACACTTCTTCCCTTCATTGAATCATCTTCGGATTCCAACA CTTCAGGATCTCAGCTTAGCCTCACTGAATCATCATCATCAACAACACAAGAAGTCTCGTCCAATTCAACTCAAACCGAA CAAGTCAAATTAGAACCACACACATCATCATCACCGCCGCCGCCGCCATCACCGCCGCCTAAGGAGGAAATTACGAAGAG GCCATTCAGGGGAGTGAGGAGAAGGCCATGGGGGAAATTCGCAGCCGAAATAAGAGACTCCACGAGAAACGGTGTTCGAG TGTGGATTGGCACGTTCGACACGGCTGAAGCAGCGGCTCTAGCTTATGACCAAGCGGCTTTGTCCACGAGAGGTTCCATG GCAGTGCTGAATTTCCCCGAGGAAGTGGTGAGGGAGTCACTGCAAGACATGGCTAACAAGCCTTGCGAAGATGGTTCCTC TCCTGTGTTGGCACTCAAGAGAAACCACACCATGAGAAGAAAGTCCAAGTCCAATAAGGCAACAAGTCACAAAAGGGCTA AAAGGGAAGAAACAATGCAGTTGGAGATTAATCTCTCCACAAATGTTATAGTTTTGGAGGATTTGGGTTCTGAATATCTT GACCAACTCTTGAGCTTGACTTCTTCTCAAGAAATCCCATTTGGTAGCTAG
Protein sequence (LotjaGi5g1v0180600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDFDSSFFQHQNLNSSFSNPSFSSESFSWEDFFFFNEDNNTLLPFIESSSDSNTSGSQLSLTESSSSTTQEVSSNSTQTE QVKLEPHTSSSPPPPPSPPPKEEITKRPFRGVRRRPWGKFAAEIRDSTRNGVRVWIGTFDTAEAAALAYDQAALSTRGSM AVLNFPEEVVRESLQDMANKPCEDGSSPVLALKRNHTMRRKSKSNKATSHKRAKREETMQLEINLSTNVIVLEDLGSEYL DQLLSLTSSQEIPFGS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 251 | 251 | 1.1E-104 | – | |
| PANTHER | 1 | 251 | 251 | 1.1E-104 | – | |
| MobiDBLite | 46 | 87 | 42 | - | – | |
| MobiDBLite | 46 | 112 | 67 | - | – | |
| MobiDBLite | 88 | 102 | 15 | - | – | |
| Gene3D | 107 | 169 | 63 | 9.3E-29 | ||
| SMART | 108 | 172 | 65 | 5.0E-34 | ||
| ProSiteProfiles | 108 | 166 | 59 | 22.392 | ||
| Pfam | 109 | 158 | 50 | 4.4E-12 | ||
| PRINTS | 109 | 120 | 12 | 7.4E-10 | ||
| CDD | 109 | 167 | 59 | 1.26157E-18 | ||
| SUPERFAMILY | 109 | 167 | 59 | 2.42E-21 | ||
| PRINTS | 132 | 148 | 17 | 7.4E-10 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Molecular function | DNA-binding transcription factor activity | A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units, and include bacterial operons. | ||
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. |
Expression pattern of LotjaGi5g1v0180600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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