Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

LotjaGi5g1v0184700.2

Overview

Field Value
Gene ID LotjaGi5g1v0184700
Transcript ID LotjaGi5g1v0184700.2
Related isoforms 1
Lotus japonicus genome version Gifu v1.2
Description Ethylene-responsive transcription factor; TAIR: AT3G23240.1 ethylene response factor 1; Swiss-Prot: sp|Q8LDC8|ERF92_ARATH Ethylene-responsive transcription factor 1B; TrEMBL-Plants: tr|B3IX26|B3IX26_LOTJA Transcription factor AP2-EREBP; Found in the gene: LotjaGi5g1v0184700
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr5:47021656..47022339) extracted from Lotus japonicus Gifu genome v1.2.

ATGGATTCACCATTAACCTTCAATTCTTCCAATTCAGAATTCTCCTCTGAATCCTCATCTTTTGAAACCAATTACCTTCC TTTCAACGAGAATGACCCGGAGGAGATGCTTCTGTATGGCATGATCGCCGACGGCGCAAACAGCCTCCACCACCACCACC ACCACCAGATGTTTGATGGTAGGGCTATGTCAATTAAAGAAGAGGAGGTGAGTTCGGAGGAGAATGGCTGCGGCAGTAGC CCGAGGAAGGAGAAGTCGTACCGAGGTGTAAGGAGGCGGCCGTGGGGGAAGTTTGCAGCTGAGATAAGGGACTCAACTAG GAATGGCGTGAGGGTGTGGCTGGGGACGTTTGATAGCGCGGAAGCCGCCGCGTTGGCTTATGATCAAGCTGCTTTTGCCA TGAGGGGTTCTTCGGCTATACTCAATTTTCCAGTTGATGTTGTGAGGGAATCGCTTAGTGAGATGAATTGTGGTGATTAT GGCTCTGAAGAAGGGGGTTCCCCTGTTGTTGCTCTGAAGAGGAAGCACTCTCTGAGGAGGAAAATTGGTGTTAAGAAGAG CAAGGAGAGTGATGGTAGGAGGAGTGGGATGGAGATGAACAATGCTGTTGTGTTTGAGGATCTTGGTTCTGATTACTTGG AACAATTATTGATGTCCTCTGATCAAGTTCCTTGTAATTGGTGA
Download Genomic Sequence

CDS sequence (LotjaGi5g1v0184700.2) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGATTCACCATTAACCTTCAATTCTTCCAATTCAGAATTCTCCTCTGAATCCTCATCTTTTGAAACCAATTACCTTCC TTTCAACGAGAATGACCCGGAGGAGATGCTTCTGTATGGCATGATCGCCGACGGCGCAAACATTAAAGAAGAGGAGGTGA GTTCGGAGGAGAATGGCTGCGGCAGTAGCCCGAGGAAGGAGAAGTCGTACCGAGGTGTAAGGAGGCGGCCGTGGGGGAAG TTTGCAGCTGAGATAAGGGACTCAACTAGGAATGGCGTGAGGGTGTGGCTGGGGACGTTTGATAGCGCGGAAGCCGCCGC GTTGGCTTATGATCAAGCTGCTTTTGCCATGAGGGGTTCTTCGGCTATACTCAATTTTCCAGTTGATGTTGTGAGGGAAT CGCTTAGTGAGATGAATTGTGGTGATTATGGCTCTGAAGAAGGGGGTTCCCCTGTTGTTGCTCTGAAGAGGAAGCACTCT CTGAGGAGGAAAATTGGTGTTAAGAAGAGCAAGGAGAGTGATGGTAGGAGGAGTGGGATGGAGATGAACAATGCTGTTGT GTTTGAGGATCTTGGTTCTGATTACTTGGAACAATTATTGATGTCCTCTGATCAAGTTCCTTGTAATTGGTGA
Download CDS Sequence

Protein sequence (LotjaGi5g1v0184700.2) extracted from Lotus japonicus Gifu v1.2 Proteins.

MDSPLTFNSSNSEFSSESSSFETNYLPFNENDPEEMLLYGMIADGANIKEEEVSSEENGCGSSPRKEKSYRGVRRRPWGK FAAEIRDSTRNGVRVWLGTFDSAEAAALAYDQAAFAMRGSSAILNFPVDVVRESLSEMNCGDYGSEEGGSPVVALKRKHS LRRKIGVKKSKESDGRRSGMEMNNAVVFEDLGSDYLEQLLMSSDQVPCNW
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
MobiDBLite
mobidb-lite
1 26 26 - –
PANTHER
PTHR31190
2 206 205 3.8E-103 –
PANTHER
PTHR31190:SF132
2 206 205 3.8E-103 –
MobiDBLite
mobidb-lite
52 71 20 - –
MobiDBLite
mobidb-lite
52 68 17 - –
CDD
cd00018
68 129 62 9.97288E-22
IPR001471
Gene3D
G3DSA:3.30.730.10
68 130 63 1.4E-31
IPR036955
ProSiteProfiles
PS51032
69 127 59 23.354
IPR001471
SMART
SM00380
69 133 65 8.0E-39
IPR001471
SUPERFAMILY
SSF54171
69 129 61 1.05E-22
IPR016177
Pfam
PF00847
69 119 51 1.6E-13
IPR001471
PRINTS
PR00367
70 81 12 3.9E-13
IPR001471
PRINTS
PR00367
109 129 21 3.9E-13
IPR001471

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003677
Molecular function DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
Subterm of
GO:0003700
Molecular function DNA-binding transcription factor activity A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units, and include bacterial operons.
Subterm of
GO:0006355
Biological process Regulation of transcription, DNA-templated Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
Subterm of
Regulates

Genome browser

Expression data

Expression pattern

Expression pattern of LotjaGi5g1v0184700.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…