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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0188400 |
| Transcript ID | LotjaGi5g1v0188400.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Plant cadmium resistance 2; TAIR: AT3G18460.1 PLAC8 family protein; Swiss-Prot: sp|D9HP26|CNR10_MAIZE Cell number regulator 10; TrEMBL-Plants: tr|A0A0D2QGB0|A0A0D2QGB0_GOSRA Uncharacterized protein; Found in the gene: LotjaGi5g1v0188400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:47732143..47733618) extracted from Lotus japonicus Gifu genome v1.2.
CAAACATTTTGTTAAGCATTTTCTTTGCACCTGGAAAATGATCTTCGGTCGTTCCCCTCCCAAATGGTCAGCTCAATTCT GTGGTTGTGGAGAAGACCTCAAAACATGTAAGATAGTACTACAAATACAATTTACCAATTTTCTTATACTGTTAAAATTT TCAATATTAATCCAATGAATGATCTGTAATCAATTGAATGCAGGTATCATAACTTGTTGTCTACCGTGTGTCACCTTTGG CCAAATTGCAGAAGTTGTAGATGAAGGGCGTAGTTGTAAGTATATATATGAAATCATGCAATTAAAGAAGAAATAAAACA TGTTACTATATATGATGTTTTATTATTTTGTTGTCTTTGATCTGTGATCTAATATATATCTTCCTTGATACATATATATA GCTTGCGTTGCGCAAGGTTGTGTCTATGGGTTACTCATGTGCATCACCTGTCACTGGCTCTACTCGTGCCTTTACAGAGA GAAACTGAGGAAAAAATTTGGGTTACCTGCTGAACCTTGTTGTGATTGCTGTGTTCATTTCTGCTGCGATGCATGTGCCT TATGCCAAGAACATGCTGAGCTTAAAGCAAGAGGCCTTGACCCTTCCAAAGGTATATATTATATGGCTTTTTTTTACGGT AAATTAAGAAAAACATGGTTCACAAATTAAAAATGACGTTTCAACAAATTAGTTTTACTACATAAAAATCATATTGTAAA CACTCTCATATAGTTCACATAATCACATTAATTAGTTAAAATTTAAGTAATGTCTACTAAAAATATATATCTCATTTTCA ATTTAACGGCACACATGAATTTTGACCAATTAGAAAGAGTTGAAAAAATTGTTCAGGAAAGAAAGAGTATTTATAACACT TTTCTTTAAATAACATATTCTGAATAATAGTTGCAAAAATATGGTTCATCATTAATTAATTTTTAACATGGTATGTCATA TTATATTATATGGGAATTTTTTATATTTCAAAGTAAAAAAAAACCCGGAAGAGTGAATATATATTTCTTTTGACTCATGT CAAGGTTCAGTTACAAATGAATTTGAAAAATCAACTGGTTTTTTTTCTTCTAAAAAAACAAATTTTTTTTTTTGGTCGAT AAAAAACAAATCTAATGGTATATTCTTGGTCGAAAAACAAAGCTAATGAATGGTATTTGGCAAAAATATACGCAGGTTGG ATTGGGCCACCAAATGCTCCACCGCGAATGCCTCCCTCCATGTTTCGATAATCTATCCATCTACTGGTTACCAAAACAAA AACCATCCATCATACTCCTCCAATTCAGCAATAATGAATTTCTGTAATCTTATTAATTGTCTCTTTTTCTACTTTGCAAC TATTAGAGCTAGCTACCATGTGGTAGCACAAATGGCAGAGTAAGGTGCATCATGGTTGTTTCATAATAAACTTTAAATTG ATCAATAGCTAATTTTTAGCTATCGCTAAGCTATGG
CDS sequence (LotjaGi5g1v0188400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATCTTCGGTCGTTCCCCTCCCAAATGGTCAGCTCAATTCTGTGGTTGTGGAGAAGACCTCAAAACATGTATCATAAC TTGTTGTCTACCGTGTGTCACCTTTGGCCAAATTGCAGAAGTTGTAGATGAAGGGCGTAGTTCTTGCGTTGCGCAAGGTT GTGTCTATGGGTTACTCATGTGCATCACCTGTCACTGGCTCTACTCGTGCCTTTACAGAGAGAAACTGAGGAAAAAATTT GGGTTACCTGCTGAACCTTGTTGTGATTGCTGTGTTCATTTCTGCTGCGATGCATGTGCCTTATGCCAAGAACATGCTGA GCTTAAAGCAAGAGGCCTTGACCCTTCCAAAGGTTGGATTGGGCCACCAAATGCTCCACCGCGAATGCCTCCCTCCATGT TTCGATAA
Protein sequence (LotjaGi5g1v0188400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MIFGRSPPKWSAQFCGCGEDLKTCIITCCLPCVTFGQIAEVVDEGRSSCVAQGCVYGLLMCITCHWLYSCLYREKLRKKF GLPAEPCCDCCVHFCCDACALCQEHAELKARGLDPSKGWIGPPNAPPRMPPSMFR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 49 | 49 | - | – | |
| PANTHER | 5 | 124 | 120 | 1.4E-63 | – | |
| PANTHER | 5 | 124 | 120 | 1.4E-63 | ||
| TIGRFAM | 9 | 109 | 101 | 3.4E-28 | ||
| Pfam | 10 | 107 | 98 | 1.2E-24 | ||
| Phobius | 50 | 71 | 22 | - | – | |
| Phobius | 72 | 135 | 64 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi5g1v0188400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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