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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0194100 |
| Transcript ID | LotjaGi5g1v0194100.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Calmodulin; TAIR: AT3G22930.1 calmodulin-like 11; Swiss-Prot: sp|Q9LIK5|CML11_ARATH Calmodulin-like protein 11; TrEMBL-Plants: tr|I3SRG2|I3SRG2_LOTJA Uncharacterized protein; Found in the gene: LotjaGi5g1v0194100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:48870957..48872624) extracted from Lotus japonicus Gifu genome v1.2.
AAGAAATCTTGCTAGCTAGACAAAGCTCTACATATAGCCCAGCTAAGATTGAGCTATCCTCCACACATTGCCCTCTCCCT TGGTCTCTCTTCTTCTCTCTGTTCATATCACTTTCCTTCCTGATCAATTCAAGTTTGAAATTGAGACAAAAACACCATCA TGACAGATATCTTGAGTGAAGAACAGATTGTTGACTTCAAAGAGGCTTTTGGCTTGTTTGACAAAGATGGTGATGGTGAG CACTGCAAATTTAATTTTCTTCTTATTACAGTATCTATAACTAATTTTCATAAGATAATGTGCATCTTCTTGTTACTTTG ATTAATAGGGTGCATTACTGTGGAAGAACTTGCCACTGTGATTCGGTCATTGGATCAAAACCCCACTGAAGAAGAGCTCC AGGACATGATAACCGAAGTCGATGCAGATGGCAATGGAACCATTGAATTTGATGAGTTCTTGAACTTGATGGCCAGGAAA ATCAAAGTAATTATGTTCCTTATTTCTTTTCCATTATAGTAGTACATACTACATAGTCCCAATACCAAAATTGTACTTAT TTGTTAAAATCTAATTAGTCAAGTTCTTCTGTGTTCTGTTCCATTTAGGACACTGATGCAGAGGAGGAGCTCAAAGAGGC TTTCAAGGTTTTTGACAAAGATCAAAATGGCTATATATCAGCCACTGAGGTATACATTATATACATATTTTCATTTTTGG TTGTGCTTTTCTTTCTTTAATGGTTATGTCCTTCCAACTCTTCATTAACACCCATAAAAATTTTCTTGATATTTATTGGC AAAATTTTCAATTTCATGTAATTAAGCATAACAAATGAAGAGTCTATATCTCATTGTTTACCTGATAATTCATGACAGAG TTTTCATTTTCCCATTAAAAAGTTAATTTTAGCTACATACAACTCATCAGTACTGCAAATTTCATTTTATTAATGTGAAT TTGTTATTTGATAAATGATAAGCACATCTAGGAAAGTACACCGTACGTTTCTCGTGCAAAGGTATTAGCTGTTTGATTAG AAAATGCAACGGGGTTTGACATTCATTTGAGTGTTGCAGAGAATCTACCATTTTTTTTTTATTCTCTCTCAAAATCAATT CTGGCGAGAAGTTCAAATGAGTAAATTCGGAATGTTAGAATTGATTATAAGGAAATAGAATTTGTCTAAACATGCTATTA GTCTCATATGTGATGGTAACATATTTCTGTCTTTGTGCAGTTGAGACATGTGATGATCAATCTAGGTGAAAAACTAACCG ATGAGGAGGTAGAGCAGATGATTAAAGAAGCAGATTTGGATGGTGATGGTCAAGTTAACTATGATGAATTTGTCAAGATG ATGATGACTGTTCGATGAAACTAAATTGGATTGAGCAGAAGATTTGTTATTCAAATTCCTTGTCTTCCAATCTCATTCCC TCCCATGAAATATTGTGTTCTTGTTAGTTTTTATTGTATTTTAGTTATGTGTACTTATTATGGCCAAGATGTGAATGACA AAACATAACCACATCATCTAATTTGATCCACTCCAAGTCTCTAACCCAACGTTATTATTCTCTTGATTATTTTGTGGAAT TTTTAACAATTAGGGAAAATAGTACTGATATCAGATATCAAGTGACCAATAACAAATTATTTACTAAG
CDS sequence (LotjaGi5g1v0194100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGACAGATATCTTGAGTGAAGAACAGATTGTTGACTTCAAAGAGGCTTTTGGCTTGTTTGACAAAGATGGTGATGGGTG CATTACTGTGGAAGAACTTGCCACTGTGATTCGGTCATTGGATCAAAACCCCACTGAAGAAGAGCTCCAGGACATGATAA CCGAAGTCGATGCAGATGGCAATGGAACCATTGAATTTGATGAGTTCTTGAACTTGATGGCCAGGAAAATCAAAGACACT GATGCAGAGGAGGAGCTCAAAGAGGCTTTCAAGGTTTTTGACAAAGATCAAAATGGCTATATATCAGCCACTGAGTTGAG ACATGTGATGATCAATCTAGGTGAAAAACTAACCGATGAGGAGGTAGAGCAGATGATTAAAGAAGCAGATTTGGATGGTG ATGGTCAAGTTAACTATGATGAATTTGTCAAGATGATGATGACTGTTCGATGA
Protein sequence (LotjaGi5g1v0194100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MTDILSEEQIVDFKEAFGLFDKDGDGCITVEELATVIRSLDQNPTEEELQDMITEVDADGNGTIEFDEFLNLMARKIKDT DAEEELKEAFKVFDKDQNGYISATELRHVMINLGEKLTDEEVEQMIKEADLDGDGQVNYDEFVKMMMTVR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 1 | 50 | 50 | 8.9E-19 | – | |
| SUPERFAMILY | 3 | 148 | 146 | 8.76E-54 | ||
| PANTHER | 4 | 149 | 146 | 3.7E-88 | – | |
| PANTHER | 4 | 149 | 146 | 3.7E-88 | – | |
| ProSiteProfiles | 8 | 43 | 36 | 14.82 | ||
| SMART | 12 | 40 | 29 | 1.7E-6 | ||
| Pfam | 13 | 73 | 61 | 2.7E-15 | ||
| ProSitePatterns | 21 | 33 | 13 | - | ||
| ProSiteProfiles | 44 | 79 | 36 | 13.928 | ||
| SMART | 48 | 76 | 29 | 1.3E-7 | ||
| Gene3D | 51 | 111 | 61 | 2.0E-26 | – | |
| ProSitePatterns | 57 | 69 | 13 | - | ||
| ProSiteProfiles | 81 | 116 | 36 | 16.912 | ||
| Pfam | 83 | 146 | 64 | 2.4E-19 | ||
| SMART | 85 | 113 | 29 | 3.1E-7 | ||
| CDD | 85 | 147 | 63 | 4.69068E-22 | ||
| ProSitePatterns | 94 | 106 | 13 | - | ||
| Gene3D | 112 | 147 | 36 | 3.4E-16 | – | |
| ProSiteProfiles | 117 | 150 | 34 | 14.402 | ||
| SMART | 121 | 149 | 29 | 6.6E-8 | ||
| ProSitePatterns | 130 | 142 | 13 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Calcium ion binding | Interacting selectively and non-covalently with calcium ions (Ca2+). |
Expression pattern of LotjaGi5g1v0194100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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