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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0194300 |
| Transcript ID | LotjaGi5g1v0194300.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Trichome birefringence-like protein; TAIR: AT4G25360.1 TRICHOME BIREFRINGENCE-LIKE 18; Swiss-Prot: sp|Q8VYS5|TBL18_ARATH Protein trichome birefringence-like 18; TrEMBL-Plants: tr|I1NIC1|I1NIC1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0194300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:48916901..48922751) extracted from Lotus japonicus Gifu genome v1.2.
CATCTACATTTATTACTTTTTGAAATTAATTACATCTACATTAATCACCCTTAATGGGGGATATTGGAGTATATCTTATG CCATTTGAAGTGTCACATTTGTGATTAAAAAACATTAATTTAACCTTGTTCATCATCATAATTTTTTCTCTCAAGCATTA AGAAACATTAATTTTCCCGAAAAAGAGAACAAAAGTTGAATCGTGGATTTGAGGTTGCTCTCTCACAAATCACGTCCCAT TCCTTCCTTCCCCAAGAGGACAAGCATCAGAATCAAACACTTGCCAAGTTGTTGTCATTTCATCCACTACAACACGCATT GCTGTCTCCCAAGGTTTCTGCTTTTCATTTGTTTCATGATCCAAATCCATTTTTTTGTTATTTTTCCTTTCTGGGTATCT CAATTTCCTGTGTGAATTTTTTTTCTTCCACCCTTCCTGATGGGCATCTGAGTTTTGAAGGCTAACTGTGGATTTTTCAT AATTTGTGATTTTTTTTTTCTGATTAATTGCTTGCAAGAACAAATTTGAAGTACATGATTTTTTGATCTTTGATTTGTTA CATTTTAACTCAGAATTTGTTGCATCATATTGATTATTTATGTATATGTGGATGTAACAGGGCTGCTATTGGTGGTTGAT CTCATCTCAGACATCTTCTATGTGGTTTTCATCACTGGAAGGAAAGCTATAATTTATGATTTAAACTTGGAAAATTTTCT GTTGTTTTAAAAGCTTTCACTCTTGAGGGTGTAGTAGTGTAGAGCTTGATTCATTGATTGTATTTAATGAATGACGAGTT GGGGTTCACCCAAAGGTTCTCCTAGAATGTCTTCACATCCAAGGCCTCTTTCTTGGATTGTAGTTGTAGTGGGAGCATTG GCAGTTTTCTTGTTTTATGCTTCATGGGTTCTTTTATCGTCCCCAGTTGGTTCGACGGTTCAGGGGTATTTTTATGGTGT AGGTAGTTCAGAGAAGTTAGGCTTTTCGGTTTCTCAATTAAATGAAGCTGCTGTTGATCCTCACTTGAGTAAAAGTTCAG ATCTTGTTGATAACAAACCGTCTTTTGATCCAAAATCTACCACAACCTCCACCGATCGGTCTGATGATGGTGTGGTGGAA AAAACTGATGCAACATCAAACTCACAAGTAGACTCAAGTGAGCCTGCTTCAGTGAAAGTTCCGGTGACCAAGGAGGTGAA TGGCGCGGAAACTTCTGATAAGGAAGTTATTAATTCACAAGAACAGGTGACTTCATCTGGTGACGGTTCAGATGCGGCCA GTATTAGCTTGCCTGCTCAAACAAATCCACAAGTTGTTTTGACTTCGAACGTGACAGGTAGTGTTAGAACTGAGGAACCC ACTTCTGCAGTTTTGAATGATCAGTCTGGTGCTGCAATTAAAACATCAGATGAGACCTCTTCTGATGGTTCCACATCAAC AGCTGTTCCAACATCAGTAGAGAAGCCAAATAACACATCCAATGCTGGTTCAGCTGATTCAGGTAGTTGTCATATTTTCC TCTGCACTAGCTTGTTTTCAATGTATCATTGTATTCAGTGTTTACCATTCTTGTTATACGTACTTGATAATAACATAAAT TGTCTTGTTCTTCTTTACTTCACTCTCTTTTGGAAACACATTGTGTGTAGTGAAATAGTTTCGTTTTATTAATTTAAAGT AATTACTATTGTCATTTAACTTTCGACTGTGATCTGGTTAATGTAACACCAATTTTATCATCCGTCTAGTAAATTTCTGA CAATAAACTAAGCAAGAGATATGTTTAGTCTTTAACACATTTTTTATACATGCTGCTTCACATATTTGAAGTTATGATTT TATGGATTCGGCTAGAGAGAGAAATTCCTTTTTGGGTAAAAATGTATTTTTTCAGTGGGCAATAATAGCAATAGTGGTCT CACTGTCCATATATTTCTGTGAGTACAGCAATGAGGGCTTGAAATGAGATTTAATGCTTCGGCCAGTTTAGCTTGATTTT AGTGTGACTGTTAAGTAACCTCTCTTTTACCTTGGTGGTCTTTGTTTAAGTTCTCAACTGTGTTTATTAAGAGTTTTGTG AAAATTAGTACTTTTTCTTTGGCTTGGGATAGGGAGCATAATCAGACTAAGTTGTGAGTTGGAAGGTATGCACCATTGAA AGTGGTCCAAATTGTAGTATTATGGAGGCAACTGTCGCTGACATTACCATAGTGGAATACAGTTATTTTTCCACCCATTA GAACTTTACTCTTTTTAGTAAAAGTTGATTATGACGGCTTGTCAAGTCCGTCACTTGCAAAATATTTGACTCAATGTCAC TCATGCAAGCCCACAGAGATTCATCATTCATTCCCTTCCAATTTTTACTCTTTGAGGTTCCAAGGTTCAATTACGGGTGG ATTTTCATGTCATTCATTACTTTTGTCCCTTTTTATGACCCCTGATATGTGCACAAGGCTCCATATACTGCCTTATTTGT TGTCAAGTGATCCAACAAACTTTGATGCAATCTTTCAATTTAAGCACTGTTTTATGGTCTGTTACATAGGTTTGGTAATA ACTTATAACAAGGAGCCCAAAACTCTGGCAGAGTACAGTTGTGTCACTACGGTTTTAACTTGACAACTTCTTACGGTATA GGGCTACATTTATGGCTTTGCTTTGGTGTTATTTTACCATTGTGGCATACAGTTATTTTTCCACCCATTAGAACTTCACT GTTTTTGGTAAAAGTTGATTATGACGGCTTGTCAACTCCGTCACATGCAAAATATTCGACTCAATGTCACTCATGCAAGC CCACAGAGATTCATCATTCATTTCCATCCAAATTTTACTCTTTGAGGTTCCAAGGTTCAATTACGGGTGGATTTTCATGT CATTCATTACTTTTGTCCCTTTTTATGGCCCCTAATATGTGCATAAGGCTCCATATACTGACTTATTTGTTGTCAAGTGA TCCAGCGAACTTAGATGCATCCTTTCAATTGAAGCATTGTTTTATGGTTTGTTACATAGGTTTTAGTAATAACTTATAAT TATAGCAAGGAGCCCAAAACTCTGGCAGAGTACAGTCGTGTCTCTACGGTTTTAACTTGACAATCTCTTATGGTAAAGGG CTACATTTATGGCTTTGCTTTGGTGTTGTTCATGGTTGCTTCAAGGCAGTTGCCATCTCTATTGTGCAGAAAAATGGGAA GCTTTGCTGCACTTTCAAATTTCAATAGTTGTGTTTTTTCTCTTTGAAGAAAGATGTGATTCTCCTGTTATGAACTTACT GTTAACCCTTTCAGGTCGATAAATTAAAGTTTTTCAACCTTGAGCAGTTTATGTTTCTTTCCCCTCTTTGACCTCAGATA CCTCTTAATCACTTGTTTAGTTGTTCTTGCATAGGTTACTGTGTTGAGCAAGTAATCTATACTGTTGCACAGCTTTAATG AGCGTTAACATCTCCATAAAGTCAGGATTTGTCAATTTGCTTTGGGAAAAAGGAAAGGAAGGTTTGGGGTGTTTAGTTGT CTAGTTTGTCTGTTTGGTAAATTTATAGAAATTTTTTGGTCAAGAAAACCTCTGGGATAGATTGACATATTGATAATTGG TTGTTCGCTGTTCCTTATTTCTTTATGCAGTAGACCGATATCATTTTCTGTTTTTCTATTTTACGTTTCCCTTTATACAA ACAAAAAAAAAAATTTCCGACAAAAAGTAAAGGGGTGTCAGGTGTGGAAAATATGGATTTAAAGTTGAATTTAGAGTAGT TTAACCTTTATGGACTACTGAGTACAAATGAAATATATAATTTAATTATTTGGTTTATGAGTTTATGAAGCATACTACAA TTTAAGCCCTCCATTGTCCGGATTTGGCTGGTAACTAGGACACAGACACAAATACATAGACAGACATAGGTTACTGGGTT ATCAGTGGCCTTGCTTTCAACTAGTTTTTCTAAAGGAAGGAGATTTCTGCTATATATTTTTAAATATTCTCAACATATGT AAATTGTGAGTAGCCGCATCTAATCTTATTACTAAGAATTTCTCAGTAGTAAACAGGAATAACCTTTATTCTAATAATAT TGGTTGCACTTACTCTGTATAAGTTTTTAATTTGTGTTTTCCACTCTATCGCGTAGGCTGTGATCTGTACCATGGAAATT GGATTCATGATCCGTCAGGACCATTATATACAAACAATTCGTGCCCTCTGATTACACAGATGCAGAATTGCCAGGGTAAT GGGAGACCTGACAAGGATTATGAGAACTGGAGATGGAAGCCCTTTCAGTGTGACATCCCACGATTTGACCCAAAGAAATT TTTGGAGCTGATGAGAGGGAGGACATTGGCTTTCATTGGAGATTCAGTAGCTCGAAACCAGATGGAATCAATGCTATGTA TTCTCTGGCAGGTTATTTTTCTTTTGGATTCCTTATTGATCTGATTTGCAAGGAAAATAAAATGATCTCAAGATGATAAT AATATTCACTGTTTTGCTGACTTGTCATTGTTAATATCTTCTCATTGTTGCTGCATATTTTGCGATTTTGGATTTTCTAG AACTTTGGGTACAAGTTAAATATTTGTATTTTATTTTGAAGCTGGTAATTCTATGTGCTTGCGTGTGAGCATCTATTTTG CCGGAGAAGCTTAACTTAAAATATGGTACTTTCAGGTCGAGGTACCGAAGAACCGGGGGAACCGTAACATGCAGCGATAT TATTTTAGGTCCACACAAGTAATGATTGTCCGGATATGGTCATCATGGCTTGTCAAGTTAACATCTGAACCATTTGATTT TGCTCCAGCTGGTGTGGACAAGCTCCATCTTGATGCCCCTGATGAGAAATTGATGGAATACATTCCGCAATTCGATGTGG TTGTTCTTTCTTCCGGTCACTGGTTCGCCAAGCAGTCTGTGTATATTCTGAACAATGAGATAGTGGGAGGACAGTTATGG TGGCCAGACAAGTCCAAGCAAATGAAGGTCAACAACATCAAAGCATATGGTATCTCTGTTGAAACAATTCTTGCTGCTCT TGCTACACATCCAAATTACACAGGGCTTGTGATTGTGCGTTCTTATTCTCCCGACCATTACGAGGGTGGGGCATGGAACA CAGGTGGGTCATGCACTGGGAAGGTTAAGCCTATTGCAATAGGTGAACTGGTGGAAAATGGGTTCACAAATACAATGCAT GAGCAACAAGTTACAGGCTTTAACAGAGCAATGAAAAGGGCTACAAATAGAGCAAAGTTGAGGTTGATGGATATCACTGA AGCCTTTCAATACAGGCATGATGGTCATCCTGGTCCTTATAGGAGTCCTGACCCAAATAAGCTCACAAAACGCGGCCCAG ATGGAAGGCCGCCGCCACAGGATTGCTTGCACTGGTGCATGCCAGGTCCTGTAGATACCTGGAATGAACTTGTGTTTGAA ATCATTAAGAGTGAATATGAAGGTAGAATTGCATCATAAGATTTATTTTTTTGTTTATTTTTTTGACAATCAAGCTGCAT GTTGTCCCTCTAAGAATTTTGAGTTTCTAGGGAGGGTTAAAAATAGAGTTCAGTTGTACCTTTGGATAGAATAATATGTT ATATAGAAATTAATTTATTTTAAGGATTGGGTTGGTAATCTGGTAGCTTATATTTCTTAACCATCAAAAGCTATCTGCTA TACTTGAATAATTGCATGTTTGAATCAACTTTTATTTTTGCAGTATCAATTTTTCCTTTTAGAAATTACTCATATAAGCT TCTCCTCATAATTGATTTTGACTTTAGAAGTAATTGTAGAAGGATTTCCAAACATGGATTAAACATGTGAATGAGAAAGT TCTGGTTTTGA
CDS sequence (LotjaGi5g1v0194300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGACGAGTTGGGGTTCACCCAAAGGTTCTCCTAGAATGTCTTCACATCCAAGGCCTCTTTCTTGGATTGTAGTTGTAGT GGGAGCATTGGCAGTTTTCTTGTTTTATGCTTCATGGGTTCTTTTATCGTCCCCAGTTGGTTCGACGGTTCAGGGGTATT TTTATGGTGTAGGTAGTTCAGAGAAGTTAGGCTTTTCGGTTTCTCAATTAAATGAAGCTGCTGTTGATCCTCACTTGAGT AAAAGTTCAGATCTTGTTGATAACAAACCGTCTTTTGATCCAAAATCTACCACAACCTCCACCGATCGGTCTGATGATGG TGTGGTGGAAAAAACTGATGCAACATCAAACTCACAAGTAGACTCAAGTGAGCCTGCTTCAGTGAAAGTTCCGGTGACCA AGGAGGTGAATGGCGCGGAAACTTCTGATAAGGAAGTTATTAATTCACAAGAACAGGTGACTTCATCTGGTGACGGTTCA GATGCGGCCAGTATTAGCTTGCCTGCTCAAACAAATCCACAAGTTGTTTTGACTTCGAACGTGACAGGTAGTGTTAGAAC TGAGGAACCCACTTCTGCAGTTTTGAATGATCAGTCTGGTGCTGCAATTAAAACATCAGATGAGACCTCTTCTGATGGTT CCACATCAACAGCTGTTCCAACATCAGTAGAGAAGCCAAATAACACATCCAATGCTGGTTCAGCTGATTCAGGCTGTGAT CTGTACCATGGAAATTGGATTCATGATCCGTCAGGACCATTATATACAAACAATTCGTGCCCTCTGATTACACAGATGCA GAATTGCCAGGGTAATGGGAGACCTGACAAGGATTATGAGAACTGGAGATGGAAGCCCTTTCAGTGTGACATCCCACGAT TTGACCCAAAGAAATTTTTGGAGCTGATGAGAGGGAGGACATTGGCTTTCATTGGAGATTCAGTAGCTCGAAACCAGATG GAATCAATGCTATGTATTCTCTGGCAGGTCGAGGTACCGAAGAACCGGGGGAACCGTAACATGCAGCGATATTATTTTAG GTCCACACAAGTAATGATTGTCCGGATATGGTCATCATGGCTTGTCAAGTTAACATCTGAACCATTTGATTTTGCTCCAG CTGGTGTGGACAAGCTCCATCTTGATGCCCCTGATGAGAAATTGATGGAATACATTCCGCAATTCGATGTGGTTGTTCTT TCTTCCGGTCACTGGTTCGCCAAGCAGTCTGTGTATATTCTGAACAATGAGATAGTGGGAGGACAGTTATGGTGGCCAGA CAAGTCCAAGCAAATGAAGGTCAACAACATCAAAGCATATGGTATCTCTGTTGAAACAATTCTTGCTGCTCTTGCTACAC ATCCAAATTACACAGGGCTTGTGATTGTGCGTTCTTATTCTCCCGACCATTACGAGGGTGGGGCATGGAACACAGGTGGG TCATGCACTGGGAAGGTTAAGCCTATTGCAATAGGTGAACTGGTGGAAAATGGGTTCACAAATACAATGCATGAGCAACA AGTTACAGGCTTTAACAGAGCAATGAAAAGGGCTACAAATAGAGCAAAGTTGAGGTTGATGGATATCACTGAAGCCTTTC AATACAGGCATGATGGTCATCCTGGTCCTTATAGGAGTCCTGACCCAAATAAGCTCACAAAACGCGGCCCAGATGGAAGG CCGCCGCCACAGGATTGCTTGCACTGGTGCATGCCAGGTCCTGTAGATACCTGGAATGAACTTGTGTTTGAAATCATTAA GAGTGAATATGAAGGTAGAATTGCATCATAA
Protein sequence (LotjaGi5g1v0194300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MTSWGSPKGSPRMSSHPRPLSWIVVVVGALAVFLFYASWVLLSSPVGSTVQGYFYGVGSSEKLGFSVSQLNEAAVDPHLS KSSDLVDNKPSFDPKSTTTSTDRSDDGVVEKTDATSNSQVDSSEPASVKVPVTKEVNGAETSDKEVINSQEQVTSSGDGS DAASISLPAQTNPQVVLTSNVTGSVRTEEPTSAVLNDQSGAAIKTSDETSSDGSTSTAVPTSVEKPNNTSNAGSADSGCD LYHGNWIHDPSGPLYTNNSCPLITQMQNCQGNGRPDKDYENWRWKPFQCDIPRFDPKKFLELMRGRTLAFIGDSVARNQM ESMLCILWQVEVPKNRGNRNMQRYYFRSTQVMIVRIWSSWLVKLTSEPFDFAPAGVDKLHLDAPDEKLMEYIPQFDVVVL SSGHWFAKQSVYILNNEIVGGQLWWPDKSKQMKVNNIKAYGISVETILAALATHPNYTGLVIVRSYSPDHYEGGAWNTGG SCTGKVKPIAIGELVENGFTNTMHEQQVTGFNRAMKRATNRAKLRLMDITEAFQYRHDGHPGPYRSPDPNKLTKRGPDGR PPPQDCLHWCMPGPVDTWNELVFEIIKSEYEGRIAS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 19 | 19 | - | – | |
| PANTHER | 5 | 590 | 586 | 3.3E-233 | ||
| PANTHER | 5 | 590 | 586 | 3.3E-233 | – | |
| Phobius | 20 | 42 | 23 | - | – | |
| TMHMM | 20 | 42 | 23 | - | – | |
| Phobius | 43 | 596 | 554 | - | – | |
| MobiDBLite | 76 | 171 | 96 | - | – | |
| MobiDBLite | 84 | 103 | 20 | - | – | |
| MobiDBLite | 111 | 126 | 16 | - | – | |
| MobiDBLite | 142 | 171 | 30 | - | – | |
| MobiDBLite | 183 | 234 | 52 | - | – | |
| Pfam | 238 | 290 | 53 | 6.3E-21 | ||
| Pfam | 291 | 584 | 294 | 1.3E-78 | ||
| MobiDBLite | 536 | 565 | 30 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi5g1v0194300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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